SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1071201 9yq1:K (2.9) BS02 rna N/A GO:0000463 ... G1TUB1 41350250
    1071202 9yq1:KK (2.9) BS01 rna N/A GO:0003723 ... G1TPV3 41350250
    1071203 9yq1:L (2.9) BS01 rna N/A N/A N/A 41350250
    1071204 9yq1:L (2.9) BS02 rna N/A N/A N/A 41350250
    1071205 9yq1:LL (2.9) BS01 rna N/A GO:0003735 ... G1TRM4 41350250
    1071206 9yq1:M (2.9) BS01 rna N/A GO:0003723 ... G1SZ12 41350250
    1071207 9yq1:MM (2.9) BS01 rna N/A GO:0003735 ... G1SFR8 41350250
    1071208 9yq1:N (2.9) BS01 rna N/A GO:0002181 ... G1T0C1 41350250
    1071209 9yq1:N (2.9) BS02 rna N/A GO:0002181 ... G1T0C1 41350250
    1071210 9yq1:NN (2.9) BS01 rna N/A GO:0003735 ... G1SP51 41350250
    1071211 9yq1:NN (2.9) BS02 rna N/A GO:0003735 ... G1SP51 41350250
    1071212 9yq1:O (2.9) BS01 rna N/A GO:0003729 ... G1TVS8 41350250
    1071213 9yq1:OO (2.9) BS01 rna N/A GO:0003735 ... A0AAA9WYR1 41350250
    1071214 9yq1:OO (2.9) BS02 rna N/A GO:0003735 ... A0AAA9WYR1 41350250
    1071215 9yq1:P (2.9) BS01 rna N/A GO:0002181 ... G1SCJ6 41350250
    1071216 9yq1:P (2.9) BS02 rna N/A GO:0002181 ... G1SCJ6 41350250
    1071217 9yq1:PP (2.9) BS01 rna N/A GO:0000028 ... G1U0Q2 41350250
    1071218 9yq1:PP (2.9) BS02 rna N/A GO:0000028 ... G1U0Q2 41350250
    1071219 9yq1:Q (2.9) BS01 rna N/A GO:0003723 ... G1TFE0 41350250
    1071220 9yq1:QQ (2.9) BS01 rna N/A GO:0000462 ... G1SGX4 41350250
    1071221 9yq1:R (2.9) BS01 rna N/A GO:0022625 ... G1TJR3 41350250
    1071222 9yq1:R (2.9) BS02 rna N/A GO:0022625 ... G1TJR3 41350250
    1071223 9yq1:RR (2.9) BS01 rna N/A GO:0003735 ... G1TU13 41350250
    1071224 9yq1:S (2.9) BS01 rna N/A N/A G1TTY7 41350250
    1071225 9yq1:S (2.9) BS02 rna N/A N/A G1TTY7 41350250
    1071226 9yq1:SS (2.9) BS01 rna N/A GO:0003735 ... G1TPG3 41350250
    1071227 9yq1:SS (2.9) BS02 rna N/A GO:0003735 ... G1TPG3 41350250
    1071228 9yq1:T (2.9) BS01 rna N/A GO:0005737 ... G1SHQ2 41350250
    1071229 9yq1:T (2.9) BS02 rna N/A GO:0005737 ... G1SHQ2 41350250
    1071230 9yq1:TT (2.9) BS01 rna N/A GO:0000028 ... G1TN62 41350250
    1071231 9yq1:U (2.9) BS01 rna N/A GO:0002181 ... G1TSG1 41350250
    1071232 9yq1:UU (2.9) BS01 rna N/A GO:0003735 ... G1SIZ2 41350250
    1071233 9yq1:V (2.9) BS01 rna N/A GO:0000122 ... G1T6D1 41350250
    1071234 9yq1:W (2.9) BS01 rna N/A GO:0002181 ... G1SE28 41350250
    1071235 9yq1:W (2.9) BS02 rna N/A GO:0002181 ... G1SE28 41350250
    1071236 9yq1:WW (2.9) BS01 rna N/A GO:0003735 ... G1TG89 41350250
    1071237 9yq1:X (2.9) BS01 rna N/A GO:0005634 ... G1SE76 41350250
    1071238 9yq1:X (2.9) BS02 rna N/A GO:0005634 ... G1SE76 41350250
    1071239 9yq1:XX (2.9) BS01 rna N/A GO:0003735 ... G1SZ47 41350250
    1071240 9yq1:Y (2.9) BS01 rna N/A GO:0003735 ... G1SQH0 41350250
    1071241 9yq1:Y (2.9) BS02 rna N/A GO:0003735 ... G1SQH0 41350250
    1071242 9yq1:YY (2.9) BS01 rna N/A GO:0022627 ... G1T3D8 41350250
    1071243 9yq1:Z (2.9) BS01 rna N/A GO:0002181 ... G1TXF6 41350250
    1071244 9yq1:ZZ (2.9) BS01 rna N/A GO:0003735 ... G1TDB3 41350250
    1071245 9yq1:a (2.9) BS01 rna N/A GO:0003735 ... G1SNY0 41350250
    1071246 9yq1:aa (2.9) BS01 rna N/A GO:0003729 ... G1TFE8 41350250
    1071247 9yq1:b (2.9) BS01 rna N/A GO:0002181 ... G1SGR6 41350250
    1071248 9yq1:bb (2.9) BS01 rna N/A GO:0003735 ... G1TZ76 41350250
    1071249 9yq1:c (2.9) BS01 rna N/A GO:0005737 ... G1TDL2 41350250
    1071250 9yq1:cc (2.9) BS01 rna N/A GO:0000028 ... G1TIB4 41350250
    1071251 9yq1:d (2.9) BS01 rna N/A GO:0002181 ... G1SHG0 41350250
    1071252 9yq1:dd (2.9) BS01 rna N/A GO:0002181 ... G1U7M4 41350250
    1071253 9yq1:dd (2.9) BS02 ZN N/A GO:0002181 ... G1U7M4 41350250
    1071254 9yq1:e (2.9) BS01 rna N/A GO:0005737 ... A0AAA9WVN6 41350250
    1071255 9yq1:ee (2.9) BS01 rna N/A GO:0005634 ... G1T8A2 41350250
    1071256 9yq1:f (2.9) BS01 rna N/A GO:0005737 ... G1SF08 41350250
    1071257 9yq1:ff (2.9) BS01 rna N/A GO:0003735 ... G1SK22 41350250
    1071258 9yq1:g (2.9) BS01 rna N/A GO:0005737 ... G1TXG5 41350250
    1071259 9yq1:g (2.9) BS02 ZN N/A GO:0005737 ... G1TXG5 41350250
    1071260 9yq1:gg (2.9) BS01 rna N/A GO:0001891 ... G1SJB4 41350250
    1071261 9yq1:h (2.9) BS01 rna N/A GO:0000463 ... G1SIT5 41350250
    1071262 9yq1:h (2.9) BS02 rna N/A GO:0000463 ... G1SIT5 41350250
    1071263 9yq1:i (2.9) BS01 rna N/A GO:0005737 ... G1TTQ5 41350250
    1071264 9yq1:j (2.9) BS01 rna N/A GO:0002181 ... U3KPD5 41350250
    1071265 9yq1:j (2.9) BS02 rna N/A GO:0002181 ... U3KPD5 41350250
    1071266 9yq1:j (2.9) BS03 ZN N/A GO:0002181 ... U3KPD5 41350250
    1071267 9yq1:k (2.9) BS01 rna N/A GO:0003735 ... G1U3J0 41350250
    1071268 9yq1:l (2.9) BS01 rna N/A GO:0022625 ... G1TTN1 41350250
    1071269 9yq1:l (2.9) BS02 rna N/A GO:0022625 ... G1TTN1 41350250
    1071270 9yq1:m (2.9) BS01 rna N/A N/A A0A2K5PSA0 41350250
    1071271 9yq1:m (2.9) BS02 ZN N/A N/A A0A2K5PSA0 41350250
    1071272 9yq1:o (2.9) BS01 rna N/A N/A A0AAA9WX15 41350250
    1071273 9yq1:o (2.9) BS02 rna N/A N/A A0AAA9WX15 41350250
    1071274 9yq1:o (2.9) BS03 ZN N/A N/A A0AAA9WX15 41350250
    1071275 9yq1:o (2.9) BS04 ATP N/A N/A A0AAA9WX15 41350250
    1071276 9yq1:p (2.9) BS01 rna N/A GO:0005737 ... G1SY53 41350250
    1071277 9yq1:p (2.9) BS02 ZN N/A GO:0005737 ... G1SY53 41350250
    1071278 9yq1:r (2.9) BS01 rna N/A GO:0005737 ... G1U7L1 41350250
    1071279 9yq2:A (2.9) BS01 Y01 N/A N/A N/A 41280022
    1071280 9yq2:A (2.9) BS02 MN N/A N/A N/A 41280022
    1071281 9yq4:A (3.3) BS01 UGA N/A N/A N/A 41280022
    1071282 9yq4:A (3.3) BS02 MN N/A N/A N/A 41280022
    1071283 9yq4:A (3.3) BS03 Y01 N/A N/A N/A 41280022
    1071284 9yq5:A (2.8) BS01 UGA N/A N/A N/A 41280022
    1071285 9yq5:A (2.8) BS02 Y01 N/A N/A N/A 41280022
    1071286 9yqo:E (3.26) BS01 MAN N/A N/A N/A 41735302
    1071287 9yqo:K (3.26) BS01 MAN N/A N/A N/A 41735302
    1071288 9yqo:Q (3.26) BS01 MAN N/A N/A N/A 41735302
    1071289 9yr6:A (2.3) BS01 A1CYY N/A GO:0000132 ... P42858 N/A
    1071290 9yr6:B (2.3) BS01 A1CYY N/A GO:0005515 ... P23610 N/A
    1071291 9yra:A (1.91) BS01 YUA N/A N/A P03367 41448052
    1071292 9yra:B (1.91) BS01 YUA N/A N/A P03367 41448052
    1071293 9yrc:A (2.97) BS01 ATP N/A N/A P55072 41795027
    1071294 9yrc:A (2.97) BS02 ATP N/A N/A P55072 41795027
    1071295 9yrc:B (2.97) BS01 ATP N/A N/A P55072 41795027
    1071296 9yrc:B (2.97) BS02 ATP N/A N/A P55072 41795027
    1071297 9yrc:B (2.97) BS03 ATP N/A N/A P55072 41795027
    1071298 9yrc:C (2.97) BS01 ATP N/A N/A P55072 41795027
    1071299 9yrc:C (2.97) BS02 ATP N/A N/A P55072 41795027
    1071300 9yrc:C (2.97) BS03 ATP N/A N/A P55072 41795027
    1071301 9yrc:C (2.97) BS04 ATP N/A N/A P55072 41795027
    1071302 9yrc:D (2.97) BS01 ATP N/A N/A P55072 41795027
    1071303 9yrc:D (2.97) BS02 ATP N/A N/A P55072 41795027
    1071304 9yrc:D (2.97) BS03 ADP N/A N/A P55072 41795027
    1071305 9yrc:E (2.97) BS01 ATP N/A N/A P55072 41795027
    1071306 9yrc:E (2.97) BS02 ADP N/A N/A P55072 41795027
    1071307 9yrc:E (2.97) BS03 ADP N/A N/A P55072 41795027
    1071308 9yrc:F (2.97) BS01 ATP N/A N/A P55072 41795027
    1071309 9yrc:G (2.97) BS01 peptide N/A N/A Q8TAT6 41795027
    1071310 9yrj:A (1.93) BS01 3OH N/A N/A Q6VPE5 N/A
    1071311 9yrj:B (1.93) BS01 3OH N/A N/A Q6VPE5 N/A
    1071312 9yrj:C (1.93) BS01 3OH N/A N/A Q6VPE5 N/A
    1071313 9yrk:A (3.1) BS01 ZN N/A N/A P0DTD1 41530153
    1071314 9yrk:A (3.1) BS02 ZN N/A N/A P0DTD1 41530153
    1071315 9yrk:B (3.1) BS01 rna N/A N/A P0DTD1 41530153
    1071316 9yrk:B (3.1) BS02 rna N/A N/A P0DTD1 41530153
    1071317 9yrk:B (3.1) BS03 MG N/A N/A P0DTD1 41530153
    1071318 9yrk:B (3.1) BS04 ZN N/A N/A P0DTD1 41530153
    1071319 9yrk:B (3.1) BS05 ZN N/A N/A P0DTD1 41530153
    1071320 9yrk:B (3.1) BS06 ZN N/A N/A P0DTD1 41530153
    1071321 9yrk:B (3.1) BS07 EIF N/A N/A P0DTD1 41530153
    1071322 9yrk:C (3.1) BS01 ZN N/A N/A P0DTD1 41530153
    1071323 9yrk:C (3.1) BS02 ZN N/A N/A P0DTD1 41530153
    1071324 9yrk:D (3.1) BS01 rna N/A N/A P0DTD1 41530153
    1071325 9yrk:D (3.1) BS02 rna N/A N/A P0DTD1 41530153
    1071326 9yrk:D (3.1) BS03 MG N/A N/A P0DTD1 41530153
    1071327 9yrk:D (3.1) BS04 ZN N/A N/A P0DTD1 41530153
    1071328 9yrk:D (3.1) BS05 ZN N/A N/A P0DTD1 41530153
    1071329 9yrk:D (3.1) BS06 ZN N/A N/A P0DTD1 41530153
    1071330 9yrl:A (2.9) BS01 ZN N/A N/A P0DTD1 41530153
    1071331 9yrl:A (2.9) BS02 ZN N/A N/A P0DTD1 41530153
    1071332 9yrl:B (2.9) BS01 rna N/A N/A P0DTD1 41530153
    1071333 9yrl:B (2.9) BS02 rna N/A N/A P0DTD1 41530153
    1071334 9yrl:B (2.9) BS03 MG N/A N/A P0DTD1 41530153
    1071335 9yrl:B (2.9) BS04 ZN N/A N/A P0DTD1 41530153
    1071336 9yrl:B (2.9) BS05 ZN N/A N/A P0DTD1 41530153
    1071337 9yrl:B (2.9) BS06 ZN N/A N/A P0DTD1 41530153
    1071338 9yrl:B (2.9) BS07 EIF N/A N/A P0DTD1 41530153
    1071339 9yrn:A (2.4) BS01 ZN N/A N/A P0DTD1 41530153
    1071340 9yrn:B (2.4) BS01 rna N/A N/A P0DTD1 41530153
    1071341 9yrn:B (2.4) BS02 MG N/A N/A P0DTD1 41530153
    1071342 9yrn:B (2.4) BS03 ZN N/A N/A P0DTD1 41530153
    1071343 9yrn:B (2.4) BS04 ZN N/A N/A P0DTD1 41530153
    1071344 9yrn:B (2.4) BS05 ZN N/A N/A P0DTD1 41530153
    1071345 9yrn:B (2.4) BS06 K5X N/A N/A P0DTD1 41530153
    1071346 9yrn:C (2.4) BS01 ZN N/A N/A P0DTD1 41530153
    1071347 9yrn:C (2.4) BS02 ZN N/A N/A P0DTD1 41530153
    1071348 9yrn:D (2.4) BS01 rna N/A N/A P0DTD1 41530153
    1071349 9yrn:D (2.4) BS02 rna N/A N/A P0DTD1 41530153
    1071350 9yrn:D (2.4) BS03 MG N/A N/A P0DTD1 41530153
    1071351 9yrn:D (2.4) BS04 MG N/A N/A P0DTD1 41530153
    1071352 9yrn:D (2.4) BS05 ZN N/A N/A P0DTD1 41530153
    1071353 9yrn:D (2.4) BS06 ZN N/A N/A P0DTD1 41530153
    1071354 9yrn:D (2.4) BS07 ZN N/A N/A P0DTD1 41530153
    1071355 9yrn:G (2.4) BS01 ZN N/A N/A P0DTD1 41530153
    1071356 9yrn:H (2.4) BS01 rna N/A N/A P0DTD1 41530153
    1071357 9yrn:H (2.4) BS02 MG N/A N/A P0DTD1 41530153
    1071358 9yrn:H (2.4) BS03 ZN N/A N/A P0DTD1 41530153
    1071359 9yrn:H (2.4) BS04 ZN N/A N/A P0DTD1 41530153
    1071360 9yrn:H (2.4) BS05 ZN N/A N/A P0DTD1 41530153
    1071361 9yrn:H (2.4) BS06 K5X N/A N/A P0DTD1 41530153
    1071362 9yrn:I (2.4) BS01 ZN N/A N/A P0DTD1 41530153
    1071363 9yrn:I (2.4) BS02 ZN N/A N/A P0DTD1 41530153
    1071364 9yrn:J (2.4) BS01 rna N/A N/A P0DTD1 41530153
    1071365 9yrn:J (2.4) BS02 rna N/A N/A P0DTD1 41530153
    1071366 9yrn:J (2.4) BS03 MG N/A N/A P0DTD1 41530153
    1071367 9yrn:J (2.4) BS04 MG N/A N/A P0DTD1 41530153
    1071368 9yrn:J (2.4) BS05 ZN N/A N/A P0DTD1 41530153
    1071369 9yrn:J (2.4) BS06 ZN N/A N/A P0DTD1 41530153
    1071370 9yrn:J (2.4) BS07 ZN N/A N/A P0DTD1 41530153
    1071371 9yro:A (2.55) BS01 ZN N/A N/A P0DTD1 41530153
    1071372 9yro:A (2.55) BS02 ZN N/A N/A P0DTD1 41530153
    1071373 9yro:B (2.55) BS01 rna N/A N/A P0DTD1 41530153
    1071374 9yro:B (2.55) BS02 MG N/A N/A P0DTD1 41530153
    1071375 9yro:B (2.55) BS03 ZN N/A N/A P0DTD1 41530153
    1071376 9yro:B (2.55) BS04 ZN N/A N/A P0DTD1 41530153
    1071377 9yro:B (2.55) BS05 ZN N/A N/A P0DTD1 41530153
    1071378 9yro:B (2.55) BS06 K5X N/A N/A P0DTD1 41530153
    1071379 9yrr:A (1.89) BS01 YUP N/A N/A P03367 41448052
    1071380 9yrr:B (1.89) BS01 YUP N/A N/A P03367 41448052
    1071381 9yru:A (3.06) BS01 ZN N/A GO:0000166 ... Q8IJP3 N/A
    1071382 9yru:B (3.06) BS01 ZN N/A GO:0000166 ... Q8IJP3 N/A
    1071383 9yrw:A (2.03) BS01 GSU N/A GO:0000166 ... Q8IJP3 N/A
    1071384 9yrw:A (2.03) BS02 ZN N/A GO:0000166 ... Q8IJP3 N/A
    1071385 9yrw:B (2.03) BS01 GSU N/A GO:0000166 ... Q8IJP3 N/A
    1071386 9yrw:B (2.03) BS02 ZN N/A GO:0000166 ... Q8IJP3 N/A
    1071387 9yrx:A (2.16) BS01 CYS N/A GO:0000166 ... Q8IJP3 N/A
    1071388 9yrx:A (2.16) BS02 ZN N/A GO:0000166 ... Q8IJP3 N/A
    1071389 9yrx:B (2.16) BS01 CYS N/A GO:0000166 ... Q8IJP3 N/A
    1071390 9yrx:B (2.16) BS02 ZN N/A GO:0000166 ... Q8IJP3 N/A
    1071391 9yry:A (1.95) BS01 YUD N/A N/A P03367 41448052
    1071392 9yry:B (1.95) BS01 YUD N/A N/A P03367 41448052
    1071393 9yrz:A (2.06) BS01 AMP N/A GO:0000166 ... Q8IJP3 N/A
    1071394 9yrz:A (2.06) BS02 ZN N/A GO:0000166 ... Q8IJP3 N/A
    1071395 9yrz:A (2.06) BS03 AMP N/A GO:0000166 ... Q8IJP3 N/A
    1071396 9yrz:A (2.06) BS04 AMP N/A GO:0000166 ... Q8IJP3 N/A
    1071397 9yrz:B (2.06) BS01 AMP N/A GO:0000166 ... Q8IJP3 N/A
    1071398 9yrz:B (2.06) BS02 AMP N/A GO:0000166 ... Q8IJP3 N/A
    1071399 9yrz:B (2.06) BS03 AMP N/A GO:0000166 ... Q8IJP3 N/A
    1071400 9yrz:B (2.06) BS04 ZN N/A GO:0000166 ... Q8IJP3 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).