SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
  • Sort results by
    << < 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549 550 551 552 553 554 > >>
    Go to page

    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    108601 2vd7:A (2.25) BS02 PD2 1.14.11.66
    1.14.11.69
    N/A O75164 18942826 BindingDB: IC50=4200nM
    108602 2vd7:B (2.25) BS01 ZN 1.14.11.66
    1.14.11.69
    N/A O75164 18942826
    108603 2vd7:B (2.25) BS02 PD2 1.14.11.66
    1.14.11.69
    N/A O75164 18942826 BindingDB: IC50=4200nM
    108604 2vd8:A (1.47) BS01 PLP 5.1.1.1 GO:0003824 ... A0A6L7HC45 18453697
    108605 2vd8:B (1.47) BS01 PLP 5.1.1.1 GO:0003824 ... A0A6L7HC45 18453697
    108606 2vd9:A (2.1) BS01 MG 5.1.1.1 GO:0003824 ... A0A6L7HC45 18453697
    108607 2vd9:A (2.1) BS02 IN5 5.1.1.1 GO:0003824 ... A0A6L7HC45 18453697
    108608 2vd9:A (2.1) BS03 EPC 5.1.1.1 GO:0003824 ... A0A6L7HC45 18453697
    108609 2vd9:A (2.1) BS04 IN5 5.1.1.1 GO:0003824 ... A0A6L7HC45 18453697
    108610 2vd9:A (2.1) BS05 EPC 5.1.1.1 GO:0003824 ... A0A6L7HC45 18453697
    108611 2vd9:B (2.1) BS01 IN5 5.1.1.1 GO:0003824 ... A0A6L7HC45 18453697
    108612 2vd9:B (2.1) BS02 EPC 5.1.1.1 GO:0003824 ... A0A6L7HC45 18453697
    108613 2vd9:B (2.1) BS03 IN5 5.1.1.1 GO:0003824 ... A0A6L7HC45 18453697
    108614 2vd9:B (2.1) BS04 EPC 5.1.1.1 GO:0003824 ... A0A6L7HC45 18453697
    108615 2vda:A (-1.00) BS01 peptide 7.4.2.8 GO:0005515 ... P10408 18022369
    108616 2vdb:A (2.52) BS01 NPS ? GO:0003677 ... P02768 18259051
    108617 2vdc:A (9.5) BS01 OMT 1.4.1.13 GO:0004355 ... Q05755 18199747
    108618 2vdc:A (9.5) BS02 FMN 1.4.1.13 GO:0004355 ... Q05755 18199747
    108619 2vdc:A (9.5) BS03 AKG 1.4.1.13 GO:0004355 ... Q05755 18199747
    108620 2vdc:A (9.5) BS04 F3S 1.4.1.13 GO:0004355 ... Q05755 18199747
    108621 2vdc:B (9.5) BS01 OMT 1.4.1.13 GO:0004355 ... Q05755 18199747
    108622 2vdc:B (9.5) BS02 FMN 1.4.1.13 GO:0004355 ... Q05755 18199747
    108623 2vdc:B (9.5) BS03 AKG 1.4.1.13 GO:0004355 ... Q05755 18199747
    108624 2vdc:B (9.5) BS04 F3S 1.4.1.13 GO:0004355 ... Q05755 18199747
    108625 2vdc:C (9.5) BS01 OMT 1.4.1.13 GO:0004355 ... Q05755 18199747
    108626 2vdc:C (9.5) BS02 FMN 1.4.1.13 GO:0004355 ... Q05755 18199747
    108627 2vdc:C (9.5) BS03 AKG 1.4.1.13 GO:0004355 ... Q05755 18199747
    108628 2vdc:C (9.5) BS04 F3S 1.4.1.13 GO:0004355 ... Q05755 18199747
    108629 2vdc:D (9.5) BS01 OMT 1.4.1.13 GO:0004355 ... Q05755 18199747
    108630 2vdc:D (9.5) BS02 FMN 1.4.1.13 GO:0004355 ... Q05755 18199747
    108631 2vdc:D (9.5) BS03 AKG 1.4.1.13 GO:0004355 ... Q05755 18199747
    108632 2vdc:D (9.5) BS04 F3S 1.4.1.13 GO:0004355 ... Q05755 18199747
    108633 2vdc:E (9.5) BS01 OMT 1.4.1.13 GO:0004355 ... Q05755 18199747
    108634 2vdc:E (9.5) BS02 FMN 1.4.1.13 GO:0004355 ... Q05755 18199747
    108635 2vdc:E (9.5) BS03 AKG 1.4.1.13 GO:0004355 ... Q05755 18199747
    108636 2vdc:E (9.5) BS04 F3S 1.4.1.13 GO:0004355 ... Q05755 18199747
    108637 2vdc:F (9.5) BS01 OMT 1.4.1.13 GO:0004355 ... Q05755 18199747
    108638 2vdc:F (9.5) BS02 FMN 1.4.1.13 GO:0004355 ... Q05755 18199747
    108639 2vdc:F (9.5) BS03 AKG 1.4.1.13 GO:0004355 ... Q05755 18199747
    108640 2vdc:F (9.5) BS04 F3S 1.4.1.13 GO:0004355 ... Q05755 18199747
    108641 2vdc:G (9.5) BS01 SF4 1.4.1.13 GO:0004355 ... Q05756 18199747
    108642 2vdc:G (9.5) BS02 SF4 1.4.1.13 GO:0004355 ... Q05756 18199747
    108643 2vdc:G (9.5) BS03 FAD 1.4.1.13 GO:0004355 ... Q05756 18199747
    108644 2vdc:H (9.5) BS01 SF4 1.4.1.13 GO:0004355 ... Q05756 18199747
    108645 2vdc:H (9.5) BS02 SF4 1.4.1.13 GO:0004355 ... Q05756 18199747
    108646 2vdc:H (9.5) BS03 FAD 1.4.1.13 GO:0004355 ... Q05756 18199747
    108647 2vdc:I (9.5) BS01 SF4 1.4.1.13 GO:0004355 ... Q05756 18199747
    108648 2vdc:I (9.5) BS02 SF4 1.4.1.13 GO:0004355 ... Q05756 18199747
    108649 2vdc:I (9.5) BS03 FAD 1.4.1.13 GO:0004355 ... Q05756 18199747
    108650 2vdc:J (9.5) BS01 SF4 1.4.1.13 GO:0004355 ... Q05756 18199747
    108651 2vdc:J (9.5) BS02 SF4 1.4.1.13 GO:0004355 ... Q05756 18199747
    108652 2vdc:J (9.5) BS03 FAD 1.4.1.13 GO:0004355 ... Q05756 18199747
    108653 2vdc:K (9.5) BS01 SF4 1.4.1.13 GO:0004355 ... Q05756 18199747
    108654 2vdc:K (9.5) BS02 SF4 1.4.1.13 GO:0004355 ... Q05756 18199747
    108655 2vdc:K (9.5) BS03 FAD 1.4.1.13 GO:0004355 ... Q05756 18199747
    108656 2vdc:L (9.5) BS01 SF4 1.4.1.13 GO:0004355 ... Q05756 18199747
    108657 2vdc:L (9.5) BS02 SF4 1.4.1.13 GO:0004355 ... Q05756 18199747
    108658 2vdc:L (9.5) BS03 FAD 1.4.1.13 GO:0004355 ... Q05756 18199747
    108659 2vdg:A (1.92) BS01 NDP 1.1.1.21 GO:0004032 ... P23901 18300247
    108660 2vdg:A (1.92) BS02 1BO 1.1.1.21 GO:0004032 ... P23901 18300247
    108661 2vdg:A (1.92) BS03 1BO 1.1.1.21 GO:0004032 ... P23901 18300247
    108662 2vdh:A (2.3) BS01 MG 4.1.1.39 GO:0000287 ... P00877 18072944
    108663 2vdh:A (2.3) BS02 CAP 4.1.1.39 GO:0000287 ... P00877 18072944
    108664 2vdh:A (2.3) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 18072944
    108665 2vdh:B (2.3) BS01 CAP 4.1.1.39 GO:0000287 ... P00877 18072944
    108666 2vdh:B (2.3) BS02 MG 4.1.1.39 GO:0000287 ... P00877 18072944
    108667 2vdh:B (2.3) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 18072944
    108668 2vdh:C (2.3) BS01 MG 4.1.1.39 GO:0000287 ... P00877 18072944
    108669 2vdh:C (2.3) BS02 CAP 4.1.1.39 GO:0000287 ... P00877 18072944
    108670 2vdh:C (2.3) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 18072944
    108671 2vdh:D (2.3) BS01 CAP 4.1.1.39 GO:0000287 ... P00877 18072944
    108672 2vdh:D (2.3) BS02 MG 4.1.1.39 GO:0000287 ... P00877 18072944
    108673 2vdh:D (2.3) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 18072944
    108674 2vdh:E (2.3) BS01 MG 4.1.1.39 GO:0000287 ... P00877 18072944
    108675 2vdh:E (2.3) BS02 CAP 4.1.1.39 GO:0000287 ... P00877 18072944
    108676 2vdh:E (2.3) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 18072944
    108677 2vdh:F (2.3) BS01 CAP 4.1.1.39 GO:0000287 ... P00877 18072944
    108678 2vdh:F (2.3) BS02 MG 4.1.1.39 GO:0000287 ... P00877 18072944
    108679 2vdh:F (2.3) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 18072944
    108680 2vdh:G (2.3) BS01 MG 4.1.1.39 GO:0000287 ... P00877 18072944
    108681 2vdh:G (2.3) BS02 CAP 4.1.1.39 GO:0000287 ... P00877 18072944
    108682 2vdh:G (2.3) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 18072944
    108683 2vdh:H (2.3) BS01 CAP 4.1.1.39 GO:0000287 ... P00877 18072944
    108684 2vdh:H (2.3) BS02 MG 4.1.1.39 GO:0000287 ... P00877 18072944
    108685 2vdh:H (2.3) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 18072944
    108686 2vdi:A (2.65) BS01 MG 4.1.1.39 GO:0000287 ... P00877 18072944
    108687 2vdi:A (2.65) BS02 CAP 4.1.1.39 GO:0000287 ... P00877 18072944
    108688 2vdi:A (2.65) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 18072944
    108689 2vdi:B (2.65) BS01 CAP 4.1.1.39 GO:0000287 ... P00877 18072944
    108690 2vdi:B (2.65) BS02 MG 4.1.1.39 GO:0000287 ... P00877 18072944
    108691 2vdi:B (2.65) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 18072944
    108692 2vdi:C (2.65) BS01 MG 4.1.1.39 GO:0000287 ... P00877 18072944
    108693 2vdi:C (2.65) BS02 CAP 4.1.1.39 GO:0000287 ... P00877 18072944
    108694 2vdi:C (2.65) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 18072944
    108695 2vdi:D (2.65) BS01 CAP 4.1.1.39 GO:0000287 ... P00877 18072944
    108696 2vdi:D (2.65) BS02 MG 4.1.1.39 GO:0000287 ... P00877 18072944
    108697 2vdi:D (2.65) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 18072944
    108698 2vdi:E (2.65) BS01 MG 4.1.1.39 GO:0000287 ... P00877 18072944
    108699 2vdi:E (2.65) BS02 CAP 4.1.1.39 GO:0000287 ... P00877 18072944
    108700 2vdi:E (2.65) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 18072944
    108701 2vdi:F (2.65) BS01 CAP 4.1.1.39 GO:0000287 ... P00877 18072944
    108702 2vdi:F (2.65) BS02 MG 4.1.1.39 GO:0000287 ... P00877 18072944
    108703 2vdi:F (2.65) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 18072944
    108704 2vdi:G (2.65) BS01 MG 4.1.1.39 GO:0000287 ... P00877 18072944
    108705 2vdi:G (2.65) BS02 CAP 4.1.1.39 GO:0000287 ... P00877 18072944
    108706 2vdi:G (2.65) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 18072944
    108707 2vdi:H (2.65) BS01 CAP 4.1.1.39 GO:0000287 ... P00877 18072944
    108708 2vdi:H (2.65) BS02 MG 4.1.1.39 GO:0000287 ... P00877 18072944
    108709 2vdi:H (2.65) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 18072944
    108710 2vdj:A (2.0) BS01 HSE 2.3.1.31 GO:0004414 ... Q72X44 18216013
    108711 2vdk:A (2.8) BS01 CA ? GO:0007155 ... P08514 18710925
    108712 2vdk:A (2.8) BS02 CA ? GO:0007155 ... P08514 18710925
    108713 2vdk:A (2.8) BS03 CA ? GO:0007155 ... P08514 18710925
    108714 2vdk:A (2.8) BS04 CA ? GO:0007155 ... P08514 18710925
    108715 2vdk:B (2.8) BS01 MG ? N/A P05106 18710925
    108716 2vdk:B (2.8) BS02 CA ? N/A P05106 18710925
    108717 2vdk:B (2.8) BS03 CA ? N/A P05106 18710925
    108718 2vdl:A (2.75) BS01 CA ? GO:0007155 ... P08514 18710925
    108719 2vdl:A (2.75) BS02 CA ? GO:0007155 ... P08514 18710925
    108720 2vdl:A (2.75) BS03 CA ? GO:0007155 ... P08514 18710925
    108721 2vdl:A (2.75) BS04 CA ? GO:0007155 ... P08514 18710925
    108722 2vdl:B (2.75) BS01 MG ? N/A P05106 18710925
    108723 2vdl:B (2.75) BS02 CA ? N/A P05106 18710925
    108724 2vdl:B (2.75) BS03 CA ? N/A P05106 18710925
    108725 2vdm:A (2.9) BS01 CA ? GO:0007155 ... P08514 18710925
    108726 2vdm:A (2.9) BS02 CA ? GO:0007155 ... P08514 18710925
    108727 2vdm:A (2.9) BS03 CA ? GO:0007155 ... P08514 18710925
    108728 2vdm:A (2.9) BS04 CA ? GO:0007155 ... P08514 18710925
    108729 2vdm:A (2.9) BS05 AGG ? GO:0007155 ... P08514 18710925 BindingDB: IC50=15nM, Kd=13nM, EC50=13.6nM
    108730 2vdm:B (2.9) BS01 AGG ? N/A P05106 18710925 BindingDB: IC50=260000nM
    108731 2vdm:B (2.9) BS02 MG ? N/A P05106 18710925
    108732 2vdm:B (2.9) BS03 CA ? N/A P05106 18710925
    108733 2vdm:B (2.9) BS04 CA ? N/A P05106 18710925
    108734 2vdn:A (2.9) BS01 peptide ? GO:0007155 ... P08514 18710925
    108735 2vdn:A (2.9) BS02 CA ? GO:0007155 ... P08514 18710925
    108736 2vdn:A (2.9) BS03 CA ? GO:0007155 ... P08514 18710925
    108737 2vdn:A (2.9) BS04 CA ? GO:0007155 ... P08514 18710925
    108738 2vdn:A (2.9) BS05 CA ? GO:0007155 ... P08514 18710925
    108739 2vdn:B (2.9) BS01 peptide ? N/A P05106 18710925
    108740 2vdn:B (2.9) BS02 MG ? N/A P05106 18710925
    108741 2vdn:B (2.9) BS03 CA ? N/A P05106 18710925
    108742 2vdn:B (2.9) BS04 CA ? N/A P05106 18710925
    108743 2vdo:A (2.51) BS01 peptide ? GO:0007155 ... P08514 18710925
    108744 2vdo:A (2.51) BS02 CA ? GO:0007155 ... P08514 18710925
    108745 2vdo:A (2.51) BS03 CA ? GO:0007155 ... P08514 18710925
    108746 2vdo:A (2.51) BS04 CA ? GO:0007155 ... P08514 18710925
    108747 2vdo:A (2.51) BS05 CA ? GO:0007155 ... P08514 18710925
    108748 2vdo:B (2.51) BS01 peptide ? N/A P05106 18710925
    108749 2vdo:B (2.51) BS02 MG ? N/A P05106 18710925
    108750 2vdo:B (2.51) BS03 CA ? N/A P05106 18710925
    108751 2vdo:B (2.51) BS04 CA ? N/A P05106 18710925
    108752 2vdp:A (2.8) BS01 peptide ? GO:0007155 ... P08514 18710925
    108753 2vdp:A (2.8) BS02 CA ? GO:0007155 ... P08514 18710925
    108754 2vdp:A (2.8) BS03 CA ? GO:0007155 ... P08514 18710925
    108755 2vdp:A (2.8) BS04 CA ? GO:0007155 ... P08514 18710925
    108756 2vdp:A (2.8) BS05 CA ? GO:0007155 ... P08514 18710925
    108757 2vdp:B (2.8) BS01 peptide ? N/A P05106 18710925
    108758 2vdp:B (2.8) BS02 MG ? N/A P05106 18710925
    108759 2vdp:B (2.8) BS03 CA ? N/A P05106 18710925
    108760 2vdp:B (2.8) BS04 CA ? N/A P05106 18710925
    108761 2vdq:A (2.59) BS01 peptide ? GO:0007155 ... P08514 18710925
    108762 2vdq:A (2.59) BS02 CA ? GO:0007155 ... P08514 18710925
    108763 2vdq:A (2.59) BS03 CA ? GO:0007155 ... P08514 18710925
    108764 2vdq:A (2.59) BS04 CA ? GO:0007155 ... P08514 18710925
    108765 2vdq:A (2.59) BS05 CA ? GO:0007155 ... P08514 18710925
    108766 2vdq:B (2.59) BS01 peptide ? N/A P05106 18710925
    108767 2vdq:B (2.59) BS02 MG ? N/A P05106 18710925
    108768 2vdq:B (2.59) BS03 CA ? N/A P05106 18710925
    108769 2vdq:B (2.59) BS04 CA ? N/A P05106 18710925
    108770 2vdr:A (2.4) BS01 peptide ? GO:0007155 ... P08514 18710925
    108771 2vdr:A (2.4) BS02 CA ? GO:0007155 ... P08514 18710925
    108772 2vdr:A (2.4) BS03 CA ? GO:0007155 ... P08514 18710925
    108773 2vdr:A (2.4) BS04 CA ? GO:0007155 ... P08514 18710925
    108774 2vdr:A (2.4) BS05 CA ? GO:0007155 ... P08514 18710925
    108775 2vdr:B (2.4) BS01 peptide ? N/A P05106 18710925
    108776 2vdr:B (2.4) BS02 MG ? N/A P05106 18710925
    108777 2vdr:B (2.4) BS03 CA ? N/A P05106 18710925
    108778 2vdr:B (2.4) BS04 CA ? N/A P05106 18710925
    108779 2vdt:A (3.2) BS01 CA 2.4.1.10 GO:0005576 ... P05655 18596022
    108780 2vdv:E (2.3) BS01 SAM 2.1.1.33 GO:0006400 ... Q12009 18184583
    108781 2vdv:F (2.3) BS01 SAM 2.1.1.33 GO:0006400 ... Q12009 18184583
    108782 2vdw:A (2.7) BS01 SAH 2.1.1.56
    2.7.7.50
    3.6.1.74
    GO:0004482 ... P04298 17989694
    108783 2vdw:C (2.7) BS01 SAH 2.1.1.56
    2.7.7.50
    3.6.1.74
    GO:0004482 ... P04298 17989694
    108784 2vdw:E (2.7) BS01 SAH 2.1.1.56
    2.7.7.50
    3.6.1.74
    GO:0004482 ... P04298 17989694
    108785 2vdw:G (2.7) BS01 SAH 2.1.1.56
    2.7.7.50
    3.6.1.74
    GO:0004482 ... P04298 17989694
    108786 2vdy:A (2.3) BS01 HCY ? GO:0004867 ... P08185 18513745 BindingDB: Ki=13nM
    108787 2vdy:B (2.3) BS01 HCY ? GO:0004867 ... P08185 18513745 BindingDB: Ki=13nM
    108788 2ve1:A (2.2) BS01 FE2 1.21.3.1 GO:0005506 ... P05326 19598184
    108789 2ve1:A (2.2) BS02 W2X 1.21.3.1 GO:0005506 ... P05326 19598184
    108790 2ve1:A (2.2) BS03 M11 1.21.3.1 GO:0005506 ... P05326 19598184
    108791 2ve3:A (2.1) BS01 HEM 1.14.-.- GO:0004497 ... Q59990 18512957
    108792 2ve3:A (2.1) BS02 REA 1.14.-.- GO:0004497 ... Q59990 18512957 MOAD: Kd<1uM
    108793 2ve3:B (2.1) BS01 HEM 1.14.-.- GO:0004497 ... Q59990 18512957
    108794 2ve3:B (2.1) BS02 REA 1.14.-.- GO:0004497 ... Q59990 18512957 MOAD: Kd<1uM
    108795 2ve4:A (2.4) BS01 HEM 1.14.-.- GO:0004497 ... Q59990 18512957
    108796 2ve4:B (2.4) BS01 HEM 1.14.-.- GO:0004497 ... Q59990 18512957
    108797 2ve6:A (2.65) BS01 peptide ? N/A P01899 18245382
    108798 2ve6:D (2.65) BS01 peptide ? N/A P01899 18245382
    108799 2ve6:G (2.65) BS01 peptide ? N/A P01899 18245382
    108800 2ve6:J (2.65) BS01 peptide ? N/A P01899 18245382

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).