SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    110801 2vxj:K (1.9) BS02 GLA ? GO:0005737 ... Q05097 18762193
    110802 2vxj:K (1.9) BS03 CA ? GO:0005737 ... Q05097 18762193
    110803 2vxj:L (1.9) BS01 BGC ? GO:0005737 ... Q05097 18762193
    110804 2vxj:L (1.9) BS02 GAL ? GO:0005737 ... Q05097 18762193
    110805 2vxj:L (1.9) BS03 GLA ? GO:0005737 ... Q05097 18762193
    110806 2vxj:L (1.9) BS04 CA ? GO:0005737 ... Q05097 18762193
    110807 2vxj:M (1.9) BS01 BGC ? GO:0005737 ... Q05097 18762193
    110808 2vxj:M (1.9) BS02 GAL ? GO:0005737 ... Q05097 18762193
    110809 2vxj:M (1.9) BS03 GLA ? GO:0005737 ... Q05097 18762193
    110810 2vxj:M (1.9) BS04 CA ? GO:0005737 ... Q05097 18762193
    110811 2vxj:N (1.9) BS01 GAL ? GO:0005737 ... Q05097 18762193
    110812 2vxj:N (1.9) BS02 GLA ? GO:0005737 ... Q05097 18762193
    110813 2vxj:N (1.9) BS03 CA ? GO:0005737 ... Q05097 18762193
    110814 2vxj:O (1.9) BS01 GAL ? GO:0005737 ... Q05097 18762193
    110815 2vxj:O (1.9) BS02 GLA ? GO:0005737 ... Q05097 18762193
    110816 2vxj:O (1.9) BS03 CA ? GO:0005737 ... Q05097 18762193
    110817 2vxj:P (1.9) BS01 GAL ? GO:0005737 ... Q05097 18762193
    110818 2vxj:P (1.9) BS02 GLA ? GO:0005737 ... Q05097 18762193
    110819 2vxj:P (1.9) BS03 CA ? GO:0005737 ... Q05097 18762193
    110820 2vxj:Q (1.9) BS01 BGC ? GO:0005737 ... Q05097 18762193
    110821 2vxj:Q (1.9) BS02 GAL ? GO:0005737 ... Q05097 18762193
    110822 2vxj:Q (1.9) BS03 GLA ? GO:0005737 ... Q05097 18762193
    110823 2vxj:Q (1.9) BS04 CA ? GO:0005737 ... Q05097 18762193
    110824 2vxj:R (1.9) BS01 BGC ? GO:0005737 ... Q05097 18762193
    110825 2vxj:R (1.9) BS02 GAL ? GO:0005737 ... Q05097 18762193
    110826 2vxj:R (1.9) BS03 GLA ? GO:0005737 ... Q05097 18762193
    110827 2vxj:R (1.9) BS04 CA ? GO:0005737 ... Q05097 18762193
    110828 2vxj:S (1.9) BS01 BGC ? GO:0005737 ... Q05097 18762193
    110829 2vxj:S (1.9) BS02 GAL ? GO:0005737 ... Q05097 18762193
    110830 2vxj:S (1.9) BS03 GLA ? GO:0005737 ... Q05097 18762193
    110831 2vxj:S (1.9) BS04 CA ? GO:0005737 ... Q05097 18762193
    110832 2vxj:T (1.9) BS01 GAL ? GO:0005737 ... Q05097 18762193
    110833 2vxj:T (1.9) BS02 GLA ? GO:0005737 ... Q05097 18762193
    110834 2vxj:T (1.9) BS03 CA ? GO:0005737 ... Q05097 18762193
    110835 2vxj:U (1.9) BS01 GAL ? GO:0005737 ... Q05097 18762193
    110836 2vxj:U (1.9) BS02 GLA ? GO:0005737 ... Q05097 18762193
    110837 2vxj:U (1.9) BS03 CA ? GO:0005737 ... Q05097 18762193
    110838 2vxj:V (1.9) BS01 BGC ? GO:0005737 ... Q05097 18762193
    110839 2vxj:V (1.9) BS02 GAL ? GO:0005737 ... Q05097 18762193
    110840 2vxj:V (1.9) BS03 GLA ? GO:0005737 ... Q05097 18762193
    110841 2vxj:V (1.9) BS04 CA ? GO:0005737 ... Q05097 18762193
    110842 2vxj:W (1.9) BS01 BGC ? GO:0005737 ... Q05097 18762193
    110843 2vxj:W (1.9) BS02 GAL ? GO:0005737 ... Q05097 18762193
    110844 2vxj:W (1.9) BS03 GLA ? GO:0005737 ... Q05097 18762193
    110845 2vxj:W (1.9) BS04 CA ? GO:0005737 ... Q05097 18762193
    110846 2vxj:X (1.9) BS01 GAL ? GO:0005737 ... Q05097 18762193
    110847 2vxj:X (1.9) BS02 GLA ? GO:0005737 ... Q05097 18762193
    110848 2vxj:X (1.9) BS03 CA ? GO:0005737 ... Q05097 18762193
    110849 2vxk:A (1.8) BS01 16G 2.3.1.4 GO:0004343 ... Q4WCU5 18601654
    110850 2vxk:A (1.8) BS02 COA 2.3.1.4 GO:0004343 ... Q4WCU5 18601654
    110851 2vxl:A (2.7) BS01 MN 2.4.1.87 GO:0005975 ... P14769 18782853
    110852 2vxl:A (2.7) BS02 UDP 2.4.1.87 GO:0005975 ... P14769 18782853
    110853 2vxn:A (0.82) BS01 PGH 5.3.1.1 GO:0004807 ... P48499 20235230
    110854 2vxn:A (0.82) BS02 PGA 5.3.1.1 GO:0004807 ... P48499 20235230
    110855 2vxo:A (2.5) BS01 XMP 6.3.5.2 GO:0003921 ... P49915 23816837
    110856 2vxo:B (2.5) BS01 XMP 6.3.5.2 GO:0003921 ... P49915 23816837
    110857 2vxx:A (2.4) BS01 ZN ? GO:0008199 ... Q8DL82 20088882
    110858 2vxx:B (2.4) BS01 ZN ? GO:0008199 ... Q8DL82 20088882
    110859 2vxx:C (2.4) BS01 ZN ? GO:0008199 ... Q8DL82 20088882
    110860 2vxx:D (2.4) BS01 ZN ? GO:0008199 ... Q8DL82 20088882
    110861 2vy0:A (2.16) BS01 CA 3.2.1.39 GO:0004553 ... O73951 19154353
    110862 2vy0:B (2.16) BS01 CA 3.2.1.39 GO:0004553 ... O73951 19154353
    110863 2vy1:A (2.104) BS01 dna ? GO:0003677 ... Q00958 18784751
    110864 2vy2:A (2.3) BS01 dna ? GO:0003677 ... Q00958 18784751
    110865 2vy4:A (-1.00) BS01 ZN ? N/A Q6IEG0 19217400
    110866 2vy5:A (-1.00) BS01 ZN ? N/A Q6IEG0 19217400
    110867 2vya:A (2.75) BS01 PF7 3.1.1.-
    3.5.1.99
    GO:0000139 ... P97612 18753625
    110868 2vya:B (2.75) BS01 PF7 3.1.1.-
    3.5.1.99
    GO:0000139 ... P97612 18753625
    110869 2vyc:A (2.4) BS01 PLP 4.1.1.19 GO:0003824 ... P28629 19298070
    110870 2vyc:B (2.4) BS01 PLP 4.1.1.19 GO:0003824 ... P28629 19298070
    110871 2vyc:C (2.4) BS01 PLP 4.1.1.19 GO:0003824 ... P28629 19298070
    110872 2vyc:D (2.4) BS01 PLP 4.1.1.19 GO:0003824 ... P28629 19298070
    110873 2vyc:E (2.4) BS01 PLP 4.1.1.19 GO:0003824 ... P28629 19298070
    110874 2vyc:F (2.4) BS01 PLP 4.1.1.19 GO:0003824 ... P28629 19298070
    110875 2vyc:G (2.4) BS01 PLP 4.1.1.19 GO:0003824 ... P28629 19298070
    110876 2vyc:H (2.4) BS01 PLP 4.1.1.19 GO:0003824 ... P28629 19298070
    110877 2vyc:I (2.4) BS01 PLP 4.1.1.19 GO:0003824 ... P28629 19298070
    110878 2vyc:J (2.4) BS01 PLP 4.1.1.19 GO:0003824 ... P28629 19298070
    110879 2vye:A (4.1) BS01 dna 3.6.4.12 GO:0003677 ... Q5KU75 19074952
    110880 2vye:B (4.1) BS01 dna 3.6.4.12 GO:0003677 ... Q5KU75 19074952
    110881 2vyn:A (2.2) BS01 NAD 1.2.1.12 GO:0004365 ... P0A9B2 19542219
    110882 2vyn:B (2.2) BS01 NAD 1.2.1.12 GO:0004365 ... P0A9B2 19542219
    110883 2vyn:C (2.2) BS01 NAD 1.2.1.12 GO:0004365 ... P0A9B2 19542219
    110884 2vyn:D (2.2) BS01 NAD 1.2.1.12 GO:0006006 ... Q9ESV6 19542219
    110885 2vyo:A (1.5) BS01 CA 3.5.1.41 GO:0005975 ... Q8SU65 19472335
    110886 2vyp:A (2.35) BS01 ATP 3.6.4.- GO:0000287 ... P68135 19035596
    110887 2vyp:A (2.35) BS02 RH9 3.6.4.- GO:0000287 ... P68135 19035596
    110888 2vyp:B (2.35) BS01 RH9 3.6.4.- GO:0000287 ... P68135 19035596
    110889 2vyp:B (2.35) BS02 CA 3.6.4.- GO:0000287 ... P68135 19035596
    110890 2vyp:B (2.35) BS03 ATP 3.6.4.- GO:0000287 ... P68135 19035596
    110891 2vyp:B (2.35) BS04 CA 3.6.4.- GO:0000287 ... P68135 19035596
    110892 2vyq:A (1.9) BS01 FAD 1.18.1.2 GO:0016491 ... P21890 19219975
    110893 2vyt:A (1.9) BS01 MLZ ? GO:0005634 ... Q9UQR0 18706910 MOAD: Kd=1.84mM
    110894 2vyt:B (1.9) BS01 MLZ ? GO:0005634 ... Q9UQR0 18706910 MOAD: Kd=1.84mM
    110895 2vyu:A (2.45) BS01 CHT ? N/A Q8DR52 19165143
    110896 2vyu:A (2.45) BS02 CHT ? N/A Q8DR52 19165143
    110897 2vyu:A (2.45) BS03 CHT ? N/A Q8DR52 19165143
    110898 2vyu:A (2.45) BS04 CHT ? N/A Q8DR52 19165143
    110899 2vyu:A (2.45) BS05 CHT ? N/A Q8DR52 19165143
    110900 2vyu:A (2.45) BS06 CHT ? N/A Q8DR52 19165143
    110901 2vyu:A (2.45) BS07 CHT ? N/A Q8DR52 19165143
    110902 2vyv:A (2.38) BS01 NAD 1.2.1.12 GO:0004365 ... P0A9B2 19542219
    110903 2vyv:B (2.38) BS01 NAD 1.2.1.12 GO:0004365 ... P0A9B2 19542219
    110904 2vyv:C (2.38) BS01 NAD 1.2.1.12 GO:0004365 ... P0A9B2 19542219
    110905 2vyv:D (2.38) BS01 1GP 1.2.1.12 GO:0006006 ... Q9ESV6 19542219
    110906 2vyv:D (2.38) BS02 NAD 1.2.1.12 GO:0006006 ... Q9ESV6 19542219
    110907 2vyw:A (1.8) BS01 HEM N/A GO:0019825 ... N/A 18621914
    110908 2vyw:A (1.8) BS02 OXY N/A GO:0019825 ... N/A 18621914
    110909 2vyx:A (1.5) BS01 FMN ? N/A Q5SIE3 N/A
    110910 2vyx:A (1.5) BS02 COA ? N/A Q5SIE3 N/A
    110911 2vyx:A (1.5) BS03 COA ? N/A Q5SIE3 N/A
    110912 2vyx:A (1.5) BS04 FMN ? N/A Q5SIE3 N/A
    110913 2vyx:B (1.5) BS01 FMN ? N/A Q5SIE3 N/A
    110914 2vyx:B (1.5) BS02 FMN ? N/A Q5SIE3 N/A
    110915 2vyx:B (1.5) BS03 COA ? N/A Q5SIE3 N/A
    110916 2vyx:B (1.5) BS04 COA ? N/A Q5SIE3 N/A
    110917 2vyx:C (1.5) BS01 FMN ? N/A Q5SIE3 N/A
    110918 2vyx:C (1.5) BS02 FMN ? N/A Q5SIE3 N/A
    110919 2vyx:C (1.5) BS03 COA ? N/A Q5SIE3 N/A
    110920 2vyx:C (1.5) BS04 COA ? N/A Q5SIE3 N/A
    110921 2vyx:D (1.5) BS01 FMN ? N/A Q5SIE3 N/A
    110922 2vyx:D (1.5) BS02 COA ? N/A Q5SIE3 N/A
    110923 2vyx:D (1.5) BS03 FMN ? N/A Q5SIE3 N/A
    110924 2vyx:D (1.5) BS04 COA ? N/A Q5SIE3 N/A
    110925 2vyx:E (1.5) BS01 FMN ? N/A Q5SIE3 N/A
    110926 2vyx:E (1.5) BS02 COA ? N/A Q5SIE3 N/A
    110927 2vyx:E (1.5) BS03 FMN ? N/A Q5SIE3 N/A
    110928 2vyx:E (1.5) BS04 COA ? N/A Q5SIE3 N/A
    110929 2vyx:F (1.5) BS01 FMN ? N/A Q5SIE3 N/A
    110930 2vyx:F (1.5) BS02 FMN ? N/A Q5SIE3 N/A
    110931 2vyx:F (1.5) BS03 FMN ? N/A Q5SIE3 N/A
    110932 2vyx:F (1.5) BS04 COA ? N/A Q5SIE3 N/A
    110933 2vyx:F (1.5) BS05 COA ? N/A Q5SIE3 N/A
    110934 2vyx:G (1.5) BS01 FMN ? N/A Q5SIE3 N/A
    110935 2vyx:G (1.5) BS02 COA ? N/A Q5SIE3 N/A
    110936 2vyx:G (1.5) BS03 FMN ? N/A Q5SIE3 N/A
    110937 2vyx:G (1.5) BS04 COA ? N/A Q5SIE3 N/A
    110938 2vyx:H (1.5) BS01 FMN ? N/A Q5SIE3 N/A
    110939 2vyx:H (1.5) BS02 COA ? N/A Q5SIE3 N/A
    110940 2vyx:H (1.5) BS03 FMN ? N/A Q5SIE3 N/A
    110941 2vyx:H (1.5) BS04 COA ? N/A Q5SIE3 N/A
    110942 2vyx:I (1.5) BS01 COA ? N/A Q5SIE3 N/A
    110943 2vyx:I (1.5) BS02 FMN ? N/A Q5SIE3 N/A
    110944 2vyx:I (1.5) BS03 FMN ? N/A Q5SIE3 N/A
    110945 2vyx:I (1.5) BS04 COA ? N/A Q5SIE3 N/A
    110946 2vyx:J (1.5) BS01 FMN ? N/A Q5SIE3 N/A
    110947 2vyx:J (1.5) BS02 FMN ? N/A Q5SIE3 N/A
    110948 2vyx:J (1.5) BS03 COA ? N/A Q5SIE3 N/A
    110949 2vyx:J (1.5) BS04 COA ? N/A Q5SIE3 N/A
    110950 2vyx:K (1.5) BS01 FMN ? N/A Q5SIE3 N/A
    110951 2vyx:K (1.5) BS02 FMN ? N/A Q5SIE3 N/A
    110952 2vyx:K (1.5) BS03 COA ? N/A Q5SIE3 N/A
    110953 2vyx:K (1.5) BS04 COA ? N/A Q5SIE3 N/A
    110954 2vyx:L (1.5) BS01 COA ? N/A Q5SIE3 N/A
    110955 2vyx:L (1.5) BS02 FMN ? N/A Q5SIE3 N/A
    110956 2vyx:L (1.5) BS03 FMN ? N/A Q5SIE3 N/A
    110957 2vyx:L (1.5) BS04 COA ? N/A Q5SIE3 N/A
    110958 2vyy:A (1.6) BS01 HEM ? GO:0019825 ... O76242 18840607
    110959 2vyy:A (1.6) BS02 OXY ? GO:0019825 ... O76242 18840607
    110960 2vyz:A (1.8) BS01 HEM ? GO:0019825 ... O76242 18840607
    110961 2vyz:A (1.8) BS02 OXY ? GO:0019825 ... O76242 18840607
    110962 2vz0:A (1.9) BS01 NAP 1.5.1.33 GO:0047040 ... O76290 19748480
    110963 2vz0:A (1.9) BS02 D64 1.5.1.33 GO:0047040 ... O76290 19748480 MOAD: Ki=9.8nM
    110964 2vz0:B (1.9) BS01 NAP 1.5.1.33 GO:0047040 ... O76290 19748480
    110965 2vz0:B (1.9) BS02 D64 1.5.1.33 GO:0047040 ... O76290 19748480 MOAD: Ki=9.8nM
    110966 2vz0:C (1.9) BS01 NAP 1.5.1.33 GO:0047040 ... O76290 19748480
    110967 2vz0:C (1.9) BS02 D64 1.5.1.33 GO:0047040 ... O76290 19748480 MOAD: Ki=9.8nM
    110968 2vz0:D (1.9) BS01 NAP 1.5.1.33 GO:0047040 ... O76290 19748480
    110969 2vz0:D (1.9) BS02 D64 1.5.1.33 GO:0047040 ... O76290 19748480 MOAD: Ki=9.8nM
    110970 2vz1:A (1.91) BS01 CA 1.1.3.9 GO:0005576 ... P0CS93 18771294
    110971 2vz2:A (2.3) BS01 FAD 1.4.3.21
    1.4.3.4
    GO:0005515 ... P27338 19053775
    110972 2vz2:A (2.3) BS02 MFG 1.4.3.21
    1.4.3.4
    GO:0005515 ... P27338 19053775
    110973 2vz2:A (2.3) BS03 C15 1.4.3.21
    1.4.3.4
    GO:0005515 ... P27338 19053775
    110974 2vz2:B (2.3) BS01 FAD 1.4.3.21
    1.4.3.4
    GO:0005515 ... P27338 19053775
    110975 2vz2:B (2.3) BS02 MFG 1.4.3.21
    1.4.3.4
    GO:0005515 ... P27338 19053775
    110976 2vz2:B (2.3) BS03 C15 1.4.3.21
    1.4.3.4
    GO:0005515 ... P27338 19053775
    110977 2vz3:A (1.9) BS01 CU 1.1.3.9 GO:0005576 ... P0CS93 18771294
    110978 2vz3:A (1.9) BS02 CU 1.1.3.9 GO:0005576 ... P0CS93 18771294
    110979 2vz3:A (1.9) BS03 CU 1.1.3.9 GO:0005576 ... P0CS93 18771294
    110980 2vz4:A (2.9) BS01 dna ? GO:0003677 ... P0A4T9 N/A
    110981 2vz5:A (1.738) BS01 ZN ? GO:0001650 ... O14907 N/A
    110982 2vz6:A (2.3) BS01 FEF 2.7.11.17 GO:0004672 ... Q9UQM7 20668654
    110983 2vz6:B (2.3) BS01 FEF 2.7.11.17 GO:0004672 ... Q9UQM7 20668654
    110984 2vz7:A (3.2) BS01 HEM 1.14.15.33 GO:0004497 ... O87605 19124459
    110985 2vz7:A (3.2) BS02 PXI 1.14.15.33 GO:0004497 ... O87605 19124459
    110986 2vz7:B (3.2) BS01 HEM 1.14.15.33 GO:0004497 ... O87605 19124459
    110987 2vz7:B (3.2) BS02 PXI 1.14.15.33 GO:0004497 ... O87605 19124459
    110988 2vz9:A (3.3) BS01 NAP 1.1.1.100
    1.3.1.39
    2.3.1.38
    2.3.1.39
    2.3.1.41
    2.3.1.85
    3.1.2.14
    4.2.1.59
    GO:0004312 ... A5YV76 18772430
    110989 2vz9:A (3.3) BS02 NAP 1.1.1.100
    1.3.1.39
    2.3.1.38
    2.3.1.39
    2.3.1.41
    2.3.1.85
    3.1.2.14
    4.2.1.59
    GO:0004312 ... A5YV76 18772430
    110990 2vz9:B (3.3) BS01 NAP 1.1.1.100
    1.3.1.39
    2.3.1.38
    2.3.1.39
    2.3.1.41
    2.3.1.85
    3.1.2.14
    4.2.1.59
    GO:0004312 ... A5YV76 18772430
    110991 2vz9:B (3.3) BS02 NAP 1.1.1.100
    1.3.1.39
    2.3.1.38
    2.3.1.39
    2.3.1.41
    2.3.1.85
    3.1.2.14
    4.2.1.59
    GO:0004312 ... A5YV76 18772430
    110992 2vzb:A (2.3) BS01 MG ? GO:0004322 ... Q5LAA6 22020642
    110993 2vzb:A (2.3) BS02 FE ? GO:0004322 ... Q5LAA6 22020642
    110994 2vzb:A (2.3) BS03 FE ? GO:0004322 ... Q5LAA6 22020642
    110995 2vzb:B (2.3) BS01 MG ? GO:0004322 ... Q5LAA6 22020642
    110996 2vzb:B (2.3) BS02 FE ? GO:0004322 ... Q5LAA6 22020642
    110997 2vzb:B (2.3) BS03 FE ? GO:0004322 ... Q5LAA6 22020642
    110998 2vzb:C (2.3) BS01 MG ? GO:0004322 ... Q5LAA6 22020642
    110999 2vzb:C (2.3) BS02 FE ? GO:0004322 ... Q5LAA6 22020642
    111000 2vzb:C (2.3) BS03 FE ? GO:0004322 ... Q5LAA6 22020642

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).