SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    12401 1eye:A (1.7) BS02 PMM 2.5.1.15 GO:0004156 ... P9WND1 11007651
    12402 1eyf:A (-1.00) BS01 ZN 2.1.1.63
    2.1.1.n11
    GO:0003677 ... P06134 11284682
    12403 1eyg:A (2.8) BS01 dna ? GO:0003697 ... P0AGE0 10932248
    12404 1eyg:A (2.8) BS02 dna ? GO:0003697 ... P0AGE0 10932248
    12405 1eyg:B (2.8) BS01 dna ? GO:0003697 ... P0AGE0 10932248
    12406 1eyg:B (2.8) BS02 dna ? GO:0003697 ... P0AGE0 10932248
    12407 1eyg:C (2.8) BS01 dna ? GO:0003697 ... P0AGE0 10932248
    12408 1eyg:D (2.8) BS01 dna ? GO:0003697 ... P0AGE0 10932248
    12409 1eyg:D (2.8) BS02 dna ? GO:0003697 ... P0AGE0 10932248
    12410 1eyi:A (2.32) BS01 F6P 3.1.3.11 GO:0000122 ... P00636 10913263
    12411 1eyi:A (2.32) BS02 MG 3.1.3.11 GO:0000122 ... P00636 10913263
    12412 1eyi:A (2.32) BS03 MG 3.1.3.11 GO:0000122 ... P00636 10913263
    12413 1eyi:A (2.32) BS04 PO4 3.1.3.11 GO:0000122 ... P00636 10913263
    12414 1eyi:A (2.32) BS05 PO4 3.1.3.11 GO:0000122 ... P00636 10913263
    12415 1eyj:A (2.28) BS01 F6P 3.1.3.11 GO:0000122 ... P00636 10913263
    12416 1eyj:A (2.28) BS02 MG 3.1.3.11 GO:0000122 ... P00636 10913263
    12417 1eyj:A (2.28) BS03 PO4 3.1.3.11 GO:0000122 ... P00636 10913263
    12418 1eyj:A (2.28) BS04 AMP 3.1.3.11 GO:0000122 ... P00636 10913263 BindingDB: IC50=1300nM
    12419 1eyj:B (2.28) BS01 F6P 3.1.3.11 GO:0000122 ... P00636 10913263
    12420 1eyj:B (2.28) BS02 MG 3.1.3.11 GO:0000122 ... P00636 10913263
    12421 1eyj:B (2.28) BS03 PO4 3.1.3.11 GO:0000122 ... P00636 10913263
    12422 1eyj:B (2.28) BS04 AMP 3.1.3.11 GO:0000122 ... P00636 10913263 BindingDB: IC50=1300nM
    12423 1eyk:A (2.23) BS01 F6P 3.1.3.11 GO:0000122 ... P00636 10913263
    12424 1eyk:A (2.23) BS02 ZN 3.1.3.11 GO:0000122 ... P00636 10913263
    12425 1eyk:A (2.23) BS03 PO4 3.1.3.11 GO:0000122 ... P00636 10913263
    12426 1eyk:A (2.23) BS04 AMP 3.1.3.11 GO:0000122 ... P00636 10913263 BindingDB: IC50=1300nM
    12427 1eyk:B (2.23) BS01 F6P 3.1.3.11 GO:0000122 ... P00636 10913263
    12428 1eyk:B (2.23) BS02 ZN 3.1.3.11 GO:0000122 ... P00636 10913263
    12429 1eyk:B (2.23) BS03 PO4 3.1.3.11 GO:0000122 ... P00636 10913263
    12430 1eyk:B (2.23) BS04 AMP 3.1.3.11 GO:0000122 ... P00636 10913263 BindingDB: IC50=1300nM
    12431 1eyn:A (1.7) BS01 2AN 2.5.1.7 GO:0003824 ... P33038 10823915 MOAD: Kd=40.8uM
    12432 1eyq:A (1.85) BS01 NAR 5.5.1.6 GO:0009813 ... P28012 10966651
    12433 1eyq:B (1.85) BS01 NAR 5.5.1.6 GO:0009813 ... P28012 10966651
    12434 1eyr:A (2.2) BS01 CDP 2.7.7.43 GO:0005737 ... P0A0Z8 11113120
    12435 1eyr:B (2.2) BS01 CDP 2.7.7.43 GO:0005737 ... P0A0Z8 11113120
    12436 1eys:C (2.2) BS01 HEM N/A GO:0005506 ... N/A 11095707
    12437 1eys:C (2.2) BS02 HEM N/A GO:0005506 ... N/A 11095707
    12438 1eys:C (2.2) BS03 HEM N/A GO:0005506 ... N/A 11095707
    12439 1eys:C (2.2) BS04 HEM N/A GO:0005506 ... N/A 11095707
    12440 1eys:L (2.2) BS01 BCL N/A GO:0009772 ... N/A 11095707
    12441 1eys:L (2.2) BS02 BCL N/A GO:0009772 ... N/A 11095707
    12442 1eys:L (2.2) BS03 BPH N/A GO:0009772 ... N/A 11095707
    12443 1eys:L (2.2) BS04 FE N/A GO:0009772 ... N/A 11095707
    12444 1eys:L (2.2) BS05 BCL N/A GO:0009772 ... N/A 11095707
    12445 1eys:L (2.2) BS06 BPH N/A GO:0009772 ... N/A 11095707
    12446 1eys:L (2.2) BS07 MQ8 N/A GO:0009772 ... N/A 11095707
    12447 1eys:M (2.2) BS01 BCL N/A GO:0009772 ... N/A 11095707
    12448 1eys:M (2.2) BS02 BPH N/A GO:0009772 ... N/A 11095707
    12449 1eys:M (2.2) BS03 FE N/A GO:0009772 ... N/A 11095707
    12450 1eys:M (2.2) BS04 BCL N/A GO:0009772 ... N/A 11095707
    12451 1eys:M (2.2) BS05 BCL N/A GO:0009772 ... N/A 11095707
    12452 1eys:M (2.2) BS06 BPH N/A GO:0009772 ... N/A 11095707
    12453 1eys:M (2.2) BS07 MQ8 N/A GO:0009772 ... N/A 11095707
    12454 1eys:M (2.2) BS08 CRT N/A GO:0009772 ... N/A 11095707
    12455 1eyt:A (1.5) BS01 SF4 ? GO:0009055 ... P80176 11095707
    12456 1eyu:A (1.78) BS01 dna 3.1.21.4 GO:0009036 ... P23657 10903853
    12457 1eyu:A (1.78) BS02 dna 3.1.21.4 GO:0009036 ... P23657 10903853
    12458 1eyu:B (1.78) BS01 dna 3.1.21.4 GO:0009036 ... P23657 10903853
    12459 1eyu:B (1.78) BS02 dna 3.1.21.4 GO:0009036 ... P23657 10903853
    12460 1eyw:A (1.9) BS01 ZN 3.1.8.1 GO:0004063 ... P0A434 10871616
    12461 1eyw:A (1.9) BS02 ZN 3.1.8.1 GO:0004063 ... P0A434 10871616
    12462 1eyw:A (1.9) BS03 TEN 3.1.8.1 GO:0004063 ... P0A434 10871616
    12463 1eyw:A (1.9) BS04 PEL 3.1.8.1 GO:0004063 ... P0A434 10871616
    12464 1eyx:A (2.25) BS01 BLA ? GO:0009535 ... Q7SIG0 11134927
    12465 1eyx:B (2.25) BS01 peptide ? GO:0009535 ... Q7SIF9 11134927
    12466 1eyx:B (2.25) BS02 PUB ? GO:0009535 ... Q7SIF9 11134927
    12467 1eyx:L (2.25) BS01 peptide ? GO:0009535 ... Q7SIF9 11134927
    12468 1eyx:L (2.25) BS02 PUB ? GO:0009535 ... Q7SIF9 11134927
    12469 1eyy:A (2.5) BS01 NAP 1.2.1.4 GO:0016491 ... Q56694 10903148
    12470 1eyy:B (2.5) BS01 NAP 1.2.1.4 GO:0016491 ... Q56694 10903148
    12471 1eyy:C (2.5) BS01 NAP 1.2.1.4 GO:0016491 ... Q56694 10903148
    12472 1eyy:D (2.5) BS01 NAP 1.2.1.4 GO:0016491 ... Q56694 10903148
    12473 1eyz:A (1.75) BS01 MG 6.3.1.21 GO:0000166 ... P33221 10913290
    12474 1eyz:A (1.75) BS02 ANP 6.3.1.21 GO:0000166 ... P33221 10913290
    12475 1eyz:B (1.75) BS01 MG 6.3.1.21 GO:0000166 ... P33221 10913290
    12476 1eyz:B (1.75) BS02 ANP 6.3.1.21 GO:0000166 ... P33221 10913290
    12477 1ez0:A (2.1) BS01 NAP 1.2.1.4 GO:0016491 ... Q56694 10903148
    12478 1ez0:B (2.1) BS01 NAP 1.2.1.4 GO:0016491 ... Q56694 10903148
    12479 1ez0:C (2.1) BS01 NAP 1.2.1.4 GO:0016491 ... Q56694 10903148
    12480 1ez0:D (2.1) BS01 NAP 1.2.1.4 GO:0016491 ... Q56694 10903148
    12481 1ez1:A (1.75) BS01 MG 6.3.1.21 GO:0000166 ... P33221 10913290
    12482 1ez1:A (1.75) BS02 ANP 6.3.1.21 GO:0000166 ... P33221 10913290
    12483 1ez1:A (1.75) BS03 GAR 6.3.1.21 GO:0000166 ... P33221 10913290
    12484 1ez1:B (1.75) BS01 MG 6.3.1.21 GO:0000166 ... P33221 10913290
    12485 1ez1:B (1.75) BS02 ANP 6.3.1.21 GO:0000166 ... P33221 10913290
    12486 1ez1:B (1.75) BS03 GAR 6.3.1.21 GO:0000166 ... P33221 10913290
    12487 1ez2:A (1.9) BS01 ZN 3.1.8.1 GO:0004063 ... P0A434 10871616
    12488 1ez2:A (1.9) BS02 ZN 3.1.8.1 GO:0004063 ... P0A434 10871616
    12489 1ez2:A (1.9) BS03 DII 3.1.8.1 GO:0004063 ... P0A434 10871616
    12490 1ez2:B (1.9) BS01 ZN 3.1.8.1 GO:0004063 ... P0A434 10871616
    12491 1ez2:B (1.9) BS02 ZN 3.1.8.1 GO:0004063 ... P0A434 10871616
    12492 1ez2:B (1.9) BS03 DII 3.1.8.1 GO:0004063 ... P0A434 10871616
    12493 1ez4:A (2.3) BS01 NAD 1.1.1.27 GO:0003824 ... P56511 11807949
    12494 1ez4:B (2.3) BS01 NAD 1.1.1.27 GO:0003824 ... P56511 11807949
    12495 1ez4:C (2.3) BS01 NAD 1.1.1.27 GO:0003824 ... P56511 11807949
    12496 1ez4:D (2.3) BS01 NAD 1.1.1.27 GO:0003824 ... P56511 11807949
    12497 1ez9:A (1.9) BS01 GLC ? GO:0005515 ... P0AEX9 11790091
    12498 1ez9:A (1.9) BS02 GLC ? GO:0005515 ... P0AEX9 11790091
    12499 1ez9:A (1.9) BS03 GLC ? GO:0005515 ... P0AEX9 11790091
    12500 1ez9:B (1.9) BS01 GLO ? GO:0005515 ... P0AEX9 11790091
    12501 1ez9:B (1.9) BS02 GLC ? GO:0005515 ... P0AEX9 11790091
    12502 1ez9:B (1.9) BS03 GLC ? GO:0005515 ... P0AEX9 11790091
    12503 1ez9:B (1.9) BS04 GLC ? GO:0005515 ... P0AEX9 11790091
    12504 1ezf:A (2.15) BS01 IN0 2.5.1.21 GO:0008610 ... P37268 10896663
    12505 1ezf:B (2.15) BS01 IN0 2.5.1.21 GO:0008610 ... P37268 10896663
    12506 1ezf:C (2.15) BS01 IN0 2.5.1.21 GO:0008610 ... P37268 10896663
    12507 1ezl:A (2.0) BS01 CU ? GO:0005507 ... P00282 10880975
    12508 1ezl:B (2.0) BS01 CU ? GO:0005507 ... P00282 10880975
    12509 1ezl:C (2.0) BS01 CU ? GO:0005507 ... P00282 10880975
    12510 1ezm:A (1.5) BS01 ZN 3.4.24.26 GO:0004222 ... P14756 1899664
    12511 1ezm:A (1.5) BS02 CA 3.4.24.26 GO:0004222 ... P14756 1899664
    12512 1ezq:A (2.2) BS01 CA 3.4.21.6 GO:0004252 ... P00742 10966741
    12513 1ezq:A (2.2) BS02 RPR 3.4.21.6 GO:0004252 ... P00742 10966741 MOAD: Ki=0.9nM
    BindingDB: Ki=0.9nM
    12514 1ezr:A (2.5) BS01 CA 3.2.2.2
    3.2.2.3
    GO:0005509 ... P83851 10409664
    12515 1ezr:B (2.5) BS01 CA 3.2.2.2
    3.2.2.3
    GO:0005509 ... P83851 10409664
    12516 1ezr:C (2.5) BS01 CA 3.2.2.2
    3.2.2.3
    GO:0005509 ... P83851 10409664
    12517 1ezr:D (2.5) BS01 CA 3.2.2.2
    3.2.2.3
    GO:0005509 ... P83851 10409664
    12518 1ezs:C (2.3) BS01 CA 3.4.21.4 GO:0004252 ... P00763 10843853
    12519 1ezs:D (2.3) BS01 CA 3.4.21.4 GO:0004252 ... P00763 10843853
    12520 1ezu:C (2.4) BS01 CA 3.4.21.4 GO:0004252 ... P00763 10843853
    12521 1ezu:D (2.4) BS01 CA 3.4.21.4 GO:0004252 ... P00763 10843853
    12522 1ezv:C (2.3) BS01 HEM 7.1.1.8 GO:0005739 ... P00163 10873857
    12523 1ezv:C (2.3) BS02 HEM 7.1.1.8 GO:0005739 ... P00163 10873857
    12524 1ezv:C (2.3) BS03 SMA 7.1.1.8 GO:0005739 ... P00163 10873857
    12525 1ezv:C (2.3) BS04 UQ6 7.1.1.8 GO:0005739 ... P00163 10873857
    12526 1ezv:D (2.3) BS01 HEM 7.1.1.8 GO:0009055 ... P07143 10873857
    12527 1ezv:E (2.3) BS01 FES 7.1.1.8 GO:0008121 ... P08067 10873857
    12528 1ezw:A (1.65) BS01 MG 1.5.98.2 GO:0005737 ... Q8TXY4 10891279
    12529 1ezz:B (2.7) BS01 ZN ? GO:0005515 ... P0A7F3 10891088
    12530 1ezz:D (2.7) BS01 ZN ? GO:0005515 ... P0A7F3 10891088
    12531 1f03:A (-1.00) BS01 HEM ? GO:0020037 ... P00171 11248680
    12532 1f04:A (-1.00) BS01 HEM ? GO:0020037 ... P00171 11248680
    12533 1f06:A (2.1) BS01 NDP 1.4.1.16 GO:0009089 ... P04964 11106178
    12534 1f06:B (2.1) BS01 NDP 1.4.1.16 GO:0009089 ... P04964 11106178
    12535 1f06:B (2.1) BS02 2NP 1.4.1.16 GO:0009089 ... P04964 11106178 MOAD: Ki=5uM
    12536 1f0j:A (1.77) BS01 ZN 3.1.4.53 GO:0004114 ... Q07343 10846163
    12537 1f0j:B (1.77) BS01 ZN 3.1.4.53 GO:0004114 ... Q07343 10846163
    12538 1f0l:A (1.55) BS01 APU 2.4.2.36 GO:0005576 ... P00588 N/A
    12539 1f0l:B (1.55) BS01 APU 2.4.2.36 GO:0005576 ... P00588 N/A
    12540 1f0o:A (2.5) BS01 dna 3.1.21.4 GO:0009036 ... P23657 10903853
    12541 1f0o:A (2.5) BS02 dna 3.1.21.4 GO:0009036 ... P23657 10903853
    12542 1f0o:A (2.5) BS03 CA 3.1.21.4 GO:0009036 ... P23657 10903853
    12543 1f0o:A (2.5) BS04 CA 3.1.21.4 GO:0009036 ... P23657 10903853
    12544 1f0o:B (2.5) BS01 dna 3.1.21.4 GO:0009036 ... P23657 10903853
    12545 1f0o:B (2.5) BS02 dna 3.1.21.4 GO:0009036 ... P23657 10903853
    12546 1f0o:B (2.5) BS03 CA 3.1.21.4 GO:0009036 ... P23657 10903853
    12547 1f0o:B (2.5) BS04 CA 3.1.21.4 GO:0009036 ... P23657 10903853
    12548 1f0p:A (1.9) BS01 GLC 2.3.1.122
    2.3.1.20
    GO:0001968 ... P9WQP1 11254389
    12549 1f0p:A (1.9) BS02 GLC 2.3.1.122
    2.3.1.20
    GO:0001968 ... P9WQP1 11254389
    12550 1f0p:A (1.9) BS03 GLC 2.3.1.122
    2.3.1.20
    GO:0001968 ... P9WQP1 11254389
    12551 1f0p:A (1.9) BS04 GLC 2.3.1.122
    2.3.1.20
    GO:0001968 ... P9WQP1 11254389
    12552 1f0q:A (2.63) BS01 EMO 2.7.11.1 GO:0004672 ... P28523 10882732 BindingDB: Ki=1850nM
    12553 1f0r:A (2.1) BS01 CA 3.4.21.6 GO:0004252 ... P00742 10966741
    12554 1f0r:A (2.1) BS02 815 3.4.21.6 GO:0004252 ... P00742 10966741 MOAD: Ki=22nM
    BindingDB: Ki=22nM
    12555 1f0s:A (2.1) BS01 CA 3.4.21.6 GO:0004252 ... P00742 10966741
    12556 1f0s:A (2.1) BS02 PR2 3.4.21.6 GO:0004252 ... P00742 10966741 MOAD: Ki=18nM
    BindingDB: Ki=18nM
    12557 1f0t:A (1.8) BS01 CA 3.4.21.4 GO:0004252 ... P00760 10966741
    12558 1f0t:A (1.8) BS02 PR1 3.4.21.4 GO:0004252 ... P00760 10966741 MOAD: Ki=1000nM
    BindingDB: Ki=1000nM
    12559 1f0u:A (1.9) BS01 CA 3.4.21.4 GO:0004252 ... P00760 10966741
    12560 1f0u:A (1.9) BS02 RPR 3.4.21.4 GO:0004252 ... P00760 10966741 MOAD: Ki=69nM
    BindingDB: Ki=69nM
    12561 1f0v:A (1.7) BS01 dna 4.6.1.18 GO:0003676 ... P61823 11224563
    12562 1f0v:A (1.7) BS02 dna 4.6.1.18 GO:0003676 ... P61823 11224563
    12563 1f0v:B (1.7) BS01 dna 4.6.1.18 GO:0003676 ... P61823 11224563
    12564 1f0v:C (1.7) BS01 dna 4.6.1.18 GO:0003676 ... P61823 11224563
    12565 1f0v:C (1.7) BS02 dna 4.6.1.18 GO:0003676 ... P61823 11224563
    12566 1f0v:D (1.7) BS01 dna 4.6.1.18 GO:0003676 ... P61823 11224563
    12567 1f0x:A (1.9) BS01 FAD 1.1.5.12 GO:0003824 ... P06149 10944213
    12568 1f0x:B (1.9) BS01 FAD 1.1.5.12 GO:0003824 ... P06149 10944213
    12569 1f0y:A (1.8) BS01 CAA 1.1.1.35 GO:0003857 ... Q16836 10840044
    12570 1f0y:A (1.8) BS02 NAD 1.1.1.35 GO:0003857 ... Q16836 10840044
    12571 1f0y:B (1.8) BS01 CAA 1.1.1.35 GO:0003857 ... Q16836 10840044
    12572 1f0y:B (1.8) BS02 NAD 1.1.1.35 GO:0003857 ... Q16836 10840044
    12573 1f12:A (2.4) BS01 3HC 1.1.1.35 GO:0003857 ... Q16836 10840044
    12574 1f17:A (2.3) BS01 NAI 1.1.1.35 GO:0003857 ... Q16836 10840044
    12575 1f17:B (2.3) BS01 NAI 1.1.1.35 GO:0003857 ... Q16836 10840044
    12576 1f18:A (1.7) BS01 CU 1.15.1.1 GO:0004784 ... P00445 10026301
    12577 1f18:A (1.7) BS02 ZN 1.15.1.1 GO:0004784 ... P00445 10026301
    12578 1f1a:A (1.8) BS01 CU 1.15.1.1 GO:0004784 ... P00445 10026301
    12579 1f1a:A (1.8) BS02 ZN 1.15.1.1 GO:0004784 ... P00445 10026301
    12580 1f1b:A (2.3) BS01 PAL 2.1.3.2 GO:0004070 ... P0A786 10891088
    12581 1f1b:B (2.3) BS01 ZN ? GO:0005515 ... P0A7F3 10891088
    12582 1f1b:C (2.3) BS01 PAL 2.1.3.2 GO:0004070 ... P0A786 10891088
    12583 1f1b:D (2.3) BS01 ZN ? GO:0005515 ... P0A7F3 10891088
    12584 1f1c:A (2.3) BS01 HEC ? GO:0005506 ... P82603 11478889
    12585 1f1c:B (2.3) BS01 HEC ? GO:0005506 ... P82603 11478889
    12586 1f1d:A (2.1) BS01 CU 1.15.1.1 GO:0004784 ... P00445 10026301
    12587 1f1d:A (2.1) BS02 ZN 1.15.1.1 GO:0004784 ... P00445 10026301
    12588 1f1f:A (2.7) BS01 HEC ? GO:0005506 ... P00118 11478889
    12589 1f1g:A (1.35) BS01 CU 1.15.1.1 GO:0004784 ... P00445 10026301
    12590 1f1g:A (1.35) BS02 ZN 1.15.1.1 GO:0004784 ... P00445 10026301
    12591 1f1g:B (1.35) BS01 CU 1.15.1.1 GO:0004784 ... P00445 10026301
    12592 1f1g:B (1.35) BS02 ZN 1.15.1.1 GO:0004784 ... P00445 10026301
    12593 1f1g:C (1.35) BS01 CU 1.15.1.1 GO:0004784 ... P00445 10026301
    12594 1f1g:C (1.35) BS02 ZN 1.15.1.1 GO:0004784 ... P00445 10026301
    12595 1f1g:D (1.35) BS01 CU 1.15.1.1 GO:0004784 ... P00445 10026301
    12596 1f1g:D (1.35) BS02 ZN 1.15.1.1 GO:0004784 ... P00445 10026301
    12597 1f1g:E (1.35) BS01 CU 1.15.1.1 GO:0004784 ... P00445 10026301
    12598 1f1g:E (1.35) BS02 ZN 1.15.1.1 GO:0004784 ... P00445 10026301
    12599 1f1g:F (1.35) BS01 CU 1.15.1.1 GO:0004784 ... P00445 10026301
    12600 1f1g:F (1.35) BS02 ZN 1.15.1.1 GO:0004784 ... P00445 10026301

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).