SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
  • Sort results by
    << < 631 632 633 634 635 636 637 638 639 640 641 642 643 644 645 646 647 648 649 650 651 > >>
    Go to page

    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    128001 3b5r:A (1.8) BS01 B5R ? N/A P10275 18805694 BindingDB: Ki=1.7nM
    128002 3b5y:A (4.5) BS01 ANP 7.5.2.6 GO:0005524 ... P63359 18024585
    128003 3b5y:C (4.5) BS01 ANP 7.5.2.6 GO:0005524 ... P63359 18024585
    128004 3b60:A (3.7) BS01 ANP 7.5.2.6 GO:0005524 ... P63359 18024585
    128005 3b60:A (3.7) BS02 ANP 7.5.2.6 GO:0005524 ... P63359 18024585
    128006 3b60:B (3.7) BS01 ANP 7.5.2.6 GO:0005524 ... P63359 18024585
    128007 3b60:B (3.7) BS02 ANP 7.5.2.6 GO:0005524 ... P63359 18024585
    128008 3b60:C (3.7) BS01 ANP 7.5.2.6 GO:0005524 ... P63359 18024585
    128009 3b60:C (3.7) BS02 ANP 7.5.2.6 GO:0005524 ... P63359 18024585
    128010 3b60:D (3.7) BS01 ANP 7.5.2.6 GO:0005524 ... P63359 18024585
    128011 3b60:D (3.7) BS02 ANP 7.5.2.6 GO:0005524 ... P63359 18024585
    128012 3b65:A (1.8) BS01 3B6 ? N/A P10275 18805694
    128013 3b66:A (1.65) BS01 B66 ? N/A P10275 18805694
    128014 3b67:A (1.9) BS01 B67 ? N/A P10275 18805694
    128015 3b68:A (1.9) BS01 B68 ? N/A P10275 18805694 BindingDB: Ki=4nM
    128016 3b69:A (1.67) BS01 BFN 3.2.1.18 GO:0004308 ... Q26964 18300214
    128017 3b6a:A (3.05) BS01 ZCT ? GO:0003677 ... Q53901 18207163
    128018 3b6a:B (3.05) BS01 ZCT ? GO:0003677 ... Q53901 18207163
    128019 3b6a:C (3.05) BS01 ZCT ? GO:0003677 ... Q53901 18207163
    128020 3b6a:D (3.05) BS01 ZCT ? GO:0003677 ... Q53901 18207163
    128021 3b6a:D (3.05) BS02 ZCT ? GO:0003677 ... Q53901 18207163
    128022 3b6a:E (3.05) BS01 ZCT ? GO:0003677 ... Q53901 18207163
    128023 3b6a:F (3.05) BS01 ZCT ? GO:0003677 ... Q53901 18207163
    128024 3b6a:G (3.05) BS01 ZCT ? GO:0003677 ... Q53901 18207163
    128025 3b6a:H (3.05) BS01 ZCT ? GO:0003677 ... Q53901 18207163
    128026 3b6b:A (2.0) BS01 DGI 2.7.4.6 GO:0000166 ... Q5UQL3 19439473
    128027 3b6b:B (2.0) BS01 DGI 2.7.4.6 GO:0000166 ... Q5UQL3 19439473
    128028 3b6b:C (2.0) BS01 DGI 2.7.4.6 GO:0000166 ... Q5UQL3 19439473
    128029 3b6b:D (2.0) BS01 DGI 2.7.4.6 GO:0000166 ... Q5UQL3 19439473
    128030 3b6b:E (2.0) BS01 DGI 2.7.4.6 GO:0000166 ... Q5UQL3 19439473
    128031 3b6b:F (2.0) BS01 DGI 2.7.4.6 GO:0000166 ... Q5UQL3 19439473
    128032 3b6c:A (2.3) BS01 SDN ? GO:0003677 ... Q53901 18207163
    128033 3b6c:A (2.3) BS02 SDN ? GO:0003677 ... Q53901 18207163
    128034 3b6c:B (2.3) BS01 SDN ? GO:0003677 ... Q53901 18207163
    128035 3b6d:A (1.2) BS01 FAE 1.1.3.6
    5.3.3.1
    GO:0004769 ... P12676 18029419
    128036 3b6f:A (3.45) BS01 dna ? GO:0000786 ... P84233 18157123
    128037 3b6f:A (3.45) BS02 dna ? GO:0000786 ... P84233 18157123
    128038 3b6f:B (3.45) BS01 dna ? GO:0000786 ... P62799 18157123
    128039 3b6f:B (3.45) BS02 dna ? GO:0000786 ... P62799 18157123
    128040 3b6f:C (3.45) BS01 dna ? GO:0000786 ... P06897 18157123
    128041 3b6f:C (3.45) BS02 dna ? GO:0000786 ... P06897 18157123
    128042 3b6f:D (3.45) BS01 dna ? GO:0000786 ... P02281 18157123
    128043 3b6f:D (3.45) BS02 dna ? GO:0000786 ... P02281 18157123
    128044 3b6f:E (3.45) BS01 dna ? GO:0000786 ... P84233 18157123
    128045 3b6f:E (3.45) BS02 dna ? GO:0000786 ... P84233 18157123
    128046 3b6f:E (3.45) BS03 MN ? GO:0000786 ... P84233 18157123
    128047 3b6f:F (3.45) BS01 dna ? GO:0000786 ... P62799 18157123
    128048 3b6f:F (3.45) BS02 dna ? GO:0000786 ... P62799 18157123
    128049 3b6f:G (3.45) BS01 dna ? GO:0000786 ... P06897 18157123
    128050 3b6f:G (3.45) BS02 dna ? GO:0000786 ... P06897 18157123
    128051 3b6f:H (3.45) BS01 dna ? GO:0000786 ... P02281 18157123
    128052 3b6f:H (3.45) BS02 dna ? GO:0000786 ... P02281 18157123
    128053 3b6g:A (3.45) BS01 dna ? GO:0000786 ... P84233 18157123
    128054 3b6g:A (3.45) BS02 dna ? GO:0000786 ... P84233 18157123
    128055 3b6g:B (3.45) BS01 dna ? GO:0000786 ... P62799 18157123
    128056 3b6g:B (3.45) BS02 dna ? GO:0000786 ... P62799 18157123
    128057 3b6g:C (3.45) BS01 dna ? GO:0000786 ... P06897 18157123
    128058 3b6g:C (3.45) BS02 dna ? GO:0000786 ... P06897 18157123
    128059 3b6g:D (3.45) BS01 dna ? GO:0000786 ... P02281 18157123
    128060 3b6g:D (3.45) BS02 dna ? GO:0000786 ... P02281 18157123
    128061 3b6g:E (3.45) BS01 dna ? GO:0000786 ... P84233 18157123
    128062 3b6g:E (3.45) BS02 dna ? GO:0000786 ... P84233 18157123
    128063 3b6g:E (3.45) BS03 MN ? GO:0000786 ... P84233 18157123
    128064 3b6g:F (3.45) BS01 dna ? GO:0000786 ... P62799 18157123
    128065 3b6g:F (3.45) BS02 dna ? GO:0000786 ... P62799 18157123
    128066 3b6g:G (3.45) BS01 dna ? GO:0000786 ... P06897 18157123
    128067 3b6g:G (3.45) BS02 dna ? GO:0000786 ... P06897 18157123
    128068 3b6g:H (3.45) BS01 dna ? GO:0000786 ... P02281 18157123
    128069 3b6g:H (3.45) BS02 dna ? GO:0000786 ... P02281 18157123
    128070 3b6h:A (1.62) BS01 MXD 4.2.1.152
    5.3.99.4
    GO:0001516 ... Q16647 18032380 MOAD: Kd=3.4uM
    128071 3b6h:A (1.62) BS02 HEM 4.2.1.152
    5.3.99.4
    GO:0001516 ... Q16647 18032380
    128072 3b6h:B (1.62) BS01 MXD 4.2.1.152
    5.3.99.4
    GO:0001516 ... Q16647 18032380 MOAD: Kd=3.4uM
    128073 3b6h:B (1.62) BS02 HEM 4.2.1.152
    5.3.99.4
    GO:0001516 ... Q16647 18032380
    128074 3b6i:A (1.66) BS01 FMN 1.6.5.2 GO:0003955 ... P0A8G6 17951395
    128075 3b6i:B (1.66) BS01 FMN 1.6.5.2 GO:0003955 ... P0A8G6 17951395
    128076 3b6j:A (2.05) BS01 FMN 1.6.5.2 GO:0003955 ... P0A8G6 17951395
    128077 3b6j:A (2.05) BS02 NAD 1.6.5.2 GO:0003955 ... P0A8G6 17951395
    128078 3b6j:B (2.05) BS01 FMN 1.6.5.2 GO:0003955 ... P0A8G6 17951395
    128079 3b6j:B (2.05) BS02 NAD 1.6.5.2 GO:0003955 ... P0A8G6 17951395
    128080 3b6j:B (2.05) BS03 AMP 1.6.5.2 GO:0003955 ... P0A8G6 17951395
    128081 3b6k:A (1.99) BS01 FMN 1.6.5.2 GO:0003955 ... P0A8G6 17951395
    128082 3b6k:B (1.99) BS01 FMN 1.6.5.2 GO:0003955 ... P0A8G6 17951395
    128083 3b6l:A (2.3) BS01 SDS 3.2.1.17 GO:0003796 ... P00698 18522744
    128084 3b6m:A (1.85) BS01 FMN 1.6.5.2 GO:0003955 ... P0A8G6 17951395
    128085 3b6m:B (1.85) BS01 FMN 1.6.5.2 GO:0003955 ... P0A8G6 17951395
    128086 3b6n:A (2.26) BS01 ZN 4.6.1.12 GO:0008685 ... A5KBP6 N/A
    128087 3b6o:A (2.1) BS01 LI 3.1.11.2 GO:0003676 ... Q91XB0 18780819
    128088 3b6o:A (2.1) BS02 TMP 3.1.11.2 GO:0003676 ... Q91XB0 18780819
    128089 3b6o:B (2.1) BS01 LI 3.1.11.2 GO:0003676 ... Q91XB0 18780819
    128090 3b6o:B (2.1) BS02 TMP 3.1.11.2 GO:0003676 ... Q91XB0 18780819
    128091 3b6o:C (2.1) BS01 LI 3.1.11.2 GO:0003676 ... Q91XB0 18780819
    128092 3b6o:C (2.1) BS02 TMP 3.1.11.2 GO:0003676 ... Q91XB0 18780819
    128093 3b6o:D (2.1) BS01 LI 3.1.11.2 GO:0003676 ... Q91XB0 18780819
    128094 3b6o:D (2.1) BS02 TMP 3.1.11.2 GO:0003676 ... Q91XB0 18780819
    128095 3b6p:A (2.3) BS01 ZN 3.1.11.2 GO:0003676 ... Q91XB0 18780819
    128096 3b6p:A (2.3) BS02 NA 3.1.11.2 GO:0003676 ... Q91XB0 18780819
    128097 3b6p:A (2.3) BS03 TMP 3.1.11.2 GO:0003676 ... Q91XB0 18780819
    128098 3b6p:B (2.3) BS01 ZN 3.1.11.2 GO:0003676 ... Q91XB0 18780819
    128099 3b6p:B (2.3) BS02 NA 3.1.11.2 GO:0003676 ... Q91XB0 18780819
    128100 3b6p:B (2.3) BS03 TMP 3.1.11.2 GO:0003676 ... Q91XB0 18780819
    128101 3b6p:C (2.3) BS01 ZN 3.1.11.2 GO:0003676 ... Q91XB0 18780819
    128102 3b6p:C (2.3) BS02 NA 3.1.11.2 GO:0003676 ... Q91XB0 18780819
    128103 3b6p:C (2.3) BS03 TMP 3.1.11.2 GO:0003676 ... Q91XB0 18780819
    128104 3b6p:D (2.3) BS01 ZN 3.1.11.2 GO:0003676 ... Q91XB0 18780819
    128105 3b6p:D (2.3) BS02 TMP 3.1.11.2 GO:0003676 ... Q91XB0 18780819
    128106 3b6q:A (2.0) BS01 GLU ? GO:0015276 ... P19491 18216201
    128107 3b6r:B (2.0) BS01 NO3 2.7.3.2 GO:0003824 ... P12277 18977227
    128108 3b6r:B (2.0) BS02 ADP 2.7.3.2 GO:0003824 ... P12277 18977227
    128109 3b6r:B (2.0) BS03 CRN 2.7.3.2 GO:0003824 ... P12277 18977227
    128110 3b6s:A (1.8) BS01 peptide ? N/A P01889 18650441
    128111 3b6t:A (2.1) BS01 QUS ? GO:0015276 ... P19491 18216201
    128112 3b6u:A (1.8) BS01 ADP ? GO:0003777 ... O15066 N/A
    128113 3b6u:B (1.8) BS01 ADP ? GO:0003777 ... O15066 N/A
    128114 3b6v:A (2.7) BS01 ADP ? GO:0003777 ... O14782 N/A
    128115 3b6v:B (2.7) BS01 ADP ? GO:0003777 ... O14782 N/A
    128116 3b6w:A (1.7) BS01 GLU ? GO:0015276 ... P19491 18216201
    128117 3b6w:B (1.7) BS01 GLU ? GO:0015276 ... P19491 18216201
    128118 3b6x:A (2.0) BS01 1BO ? GO:0005549 ... O02372 18234222
    128119 3b6x:B (2.0) BS01 1BO ? GO:0005549 ... O02372 18234222
    128120 3b6z:A (1.88) BS01 CO7 2.3.1.161 GO:0004318 ... Q9Y7D0 22733743
    128121 3b70:A (1.89) BS01 NAP 2.3.1.161 GO:0004318 ... Q9Y7D0 22733743
    128122 3b71:A (2.82) BS01 peptide 2.7.10.2 GO:0004713 ... Q05397 18078954
    128123 3b71:B (2.82) BS01 peptide 2.7.10.2 GO:0004713 ... Q05397 18078954
    128124 3b71:C (2.82) BS01 peptide 2.7.10.2 GO:0004713 ... Q05397 18078954
    128125 3b72:A (1.5) BS01 NA 3.2.1.17 GO:0003796 ... P00698 18522744
    128126 3b75:A (2.3) BS01 HEM ? GO:0004601 ... P69905 N/A
    128127 3b75:A (2.3) BS02 OXY ? GO:0004601 ... P69905 N/A
    128128 3b75:B (2.3) BS01 GLC ? GO:0004601 ... P68871 N/A
    128129 3b75:B (2.3) BS02 HEM ? GO:0004601 ... P68871 N/A
    128130 3b75:B (2.3) BS03 OXY ? GO:0004601 ... P68871 N/A
    128131 3b75:C (2.3) BS01 HEM ? GO:0004601 ... P69905 N/A
    128132 3b75:D (2.3) BS01 HEM ? GO:0004601 ... P68871 N/A
    128133 3b75:D (2.3) BS02 OXY ? GO:0004601 ... P68871 N/A
    128134 3b75:E (2.3) BS01 HEM ? GO:0004601 ... P69905 N/A
    128135 3b75:E (2.3) BS02 OXY ? GO:0004601 ... P69905 N/A
    128136 3b75:F (2.3) BS01 HEM ? GO:0004601 ... P68871 N/A
    128137 3b75:G (2.3) BS01 HEM ? GO:0004601 ... P69905 N/A
    128138 3b75:G (2.3) BS02 OXY ? GO:0004601 ... P69905 N/A
    128139 3b75:H (2.3) BS01 HEM ? GO:0004601 ... P68871 N/A
    128140 3b75:S (2.3) BS01 HEM ? GO:0004601 ... P69905 N/A
    128141 3b75:T (2.3) BS01 HEM ? GO:0004601 ... P68871 N/A
    128142 3b75:T (2.3) BS02 OXY ? GO:0004601 ... P68871 N/A
    128143 3b78:B (2.5) BS01 NAD 2.4.2.36 GO:0047286 ... P11439 18583986
    128144 3b78:D (2.5) BS01 NAD 2.4.2.36 GO:0047286 ... P11439 18583986
    128145 3b78:F (2.5) BS01 NAD 2.4.2.36 GO:0047286 ... P11439 18583986
    128146 3b7a:A (1.9) BS01 EOH ? GO:0005549 ... O02372 18234222
    128147 3b7d:A (2.5) BS01 CNI ? GO:0015276 ... P19491 17975069
    128148 3b7d:B (2.5) BS01 CNI ? GO:0015276 ... P19491 17975069
    128149 3b7d:C (2.5) BS01 CNI ? GO:0015276 ... P19491 17975069
    128150 3b7d:D (2.5) BS01 CNI ? GO:0015276 ... P19491 17975069
    128151 3b7d:E (2.5) BS01 CNI ? GO:0015276 ... P19491 17975069
    128152 3b7d:F (2.5) BS01 CNI ? GO:0015276 ... P19491 17975069
    128153 3b7d:G (2.5) BS01 CNI ? GO:0015276 ... P19491 17975069
    128154 3b7d:H (2.5) BS01 CNI ? GO:0015276 ... P19491 17975069
    128155 3b7e:A (1.45) BS01 CA 3.2.1.18 GO:0004308 ... Q9IGQ6 18715929
    128156 3b7e:A (1.45) BS02 CA 3.2.1.18 GO:0004308 ... Q9IGQ6 18715929
    128157 3b7e:A (1.45) BS03 ZMR 3.2.1.18 GO:0004308 ... Q9IGQ6 18715929
    128158 3b7e:B (1.45) BS01 CA 3.2.1.18 GO:0004308 ... Q9IGQ6 18715929
    128159 3b7e:B (1.45) BS02 CA 3.2.1.18 GO:0004308 ... Q9IGQ6 18715929
    128160 3b7e:B (1.45) BS03 ZMR 3.2.1.18 GO:0004308 ... Q9IGQ6 18715929
    128161 3b7g:A (1.9) BS01 ANP 3.6.1.15
    3.6.4.13
    GO:0003676 ... Q9UHI6 20941364
    128162 3b7g:B (1.9) BS01 ANP 3.6.1.15
    3.6.4.13
    GO:0003676 ... Q9UHI6 20941364
    128163 3b7i:A (1.75) BS01 ZN 3.4.11.10 GO:0006508 ... Q01693 18576673
    128164 3b7i:A (1.75) BS02 ZN 3.4.11.10 GO:0006508 ... Q01693 18576673
    128165 3b7i:A (1.75) BS03 PLU 3.4.11.10 GO:0006508 ... Q01693 18576673 MOAD: Ki=1.5uM
    128166 3b7i:A (1.75) BS04 LEU 3.4.11.10 GO:0006508 ... Q01693 18576673 MOAD: Ki=65uM
    128167 3b7j:A (2.4) BS01 JUG 4.2.1.59 GO:0005737 ... Q5G940 18565285
    128168 3b7j:C (2.4) BS01 JUG 4.2.1.59 GO:0005737 ... Q5G940 18565285 MOAD: Ki=6.8uM
    128169 3b7k:A (2.7) BS01 COA 3.1.2.1 GO:0016790 ... Q8WYK0 N/A
    128170 3b7k:B (2.7) BS01 COA 3.1.2.1 GO:0016790 ... Q8WYK0 N/A
    128171 3b7k:C (2.7) BS01 COA 3.1.2.1 GO:0016790 ... Q8WYK0 N/A
    128172 3b7l:A (1.95) BS01 MG 2.5.1.1
    2.5.1.10
    GO:0004659 ... P14324 N/A
    128173 3b7l:A (1.95) BS02 MG 2.5.1.1
    2.5.1.10
    GO:0004659 ... P14324 N/A
    128174 3b7l:A (1.95) BS03 MG 2.5.1.1
    2.5.1.10
    GO:0004659 ... P14324 N/A
    128175 3b7l:A (1.95) BS04 M0N 2.5.1.1
    2.5.1.10
    GO:0004659 ... P14324 N/A BindingDB: IC50=3nM
    128176 3b7n:A (1.86) BS01 B7N ? GO:0005634 ... P33324 18243114
    128177 3b7p:A (2.0) BS01 MTA 2.5.1.16 GO:0003824 ... Q8II73 N/A
    128178 3b7p:B (2.0) BS01 MTA 2.5.1.16 GO:0003824 ... Q8II73 N/A
    128179 3b7p:C (2.0) BS01 MTA 2.5.1.16 GO:0003824 ... Q8II73 N/A
    128180 3b7r:L (1.811) BS01 ZN 3.3.2.6
    3.4.11.4
    GO:0003723 ... P09960 18804029
    128181 3b7r:L (1.811) BS02 BIR 3.3.2.6
    3.4.11.4
    GO:0003723 ... P09960 18804029 MOAD: Ki=20nM
    128182 3b7s:A (1.465) BS01 peptide 3.3.2.6
    3.4.11.4
    GO:0003723 ... P09960 18804029
    128183 3b7s:A (1.465) BS02 ZN 3.3.2.6
    3.4.11.4
    GO:0003723 ... P09960 18804029
    128184 3b7t:A (2.3) BS01 peptide 3.3.2.6
    3.4.11.4
    GO:0003723 ... P09960 18804029
    128185 3b7t:A (2.3) BS02 ZN 3.3.2.6
    3.4.11.4
    GO:0003723 ... P09960 18804029
    128186 3b7u:X (1.9) BS01 ZN 3.3.2.6
    3.4.11.4
    GO:0003723 ... P09960 18804029
    128187 3b7u:X (1.9) BS02 KEL 3.3.2.6
    3.4.11.4
    GO:0003723 ... P09960 18804029 BindingDB: IC50=5nM, Ki=10nM
    128188 3b7v:A (1.46) BS01 peptide 3.4.23.16 GO:0004190 ... Q7SSI0 18052235
    128189 3b7v:B (1.46) BS01 peptide 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P04587 18052235
    128190 3b7w:A (2.0) BS01 MG 6.2.1.2
    6.2.1.25
    GO:0004321 ... Q08AH3 19345228
    128191 3b7y:A (1.8) BS01 CA 2.3.2.26 N/A P46934 N/A
    128192 3b7y:A (1.8) BS02 CA 2.3.2.26 N/A P46934 N/A
    128193 3b7z:A (2.03) BS01 B7N ? GO:0005634 ... P33324 18243114
    128194 3b80:A (1.5) BS01 peptide 3.4.23.16 GO:0004190 ... Q7SSI0 18052235
    128195 3b80:B (1.5) BS01 peptide 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P04587 18052235
    128196 3b82:B (2.35) BS01 NAD 2.4.2.36 GO:0047286 ... P11439 18583986
    128197 3b82:D (2.35) BS01 NAD 2.4.2.36 GO:0047286 ... P11439 18583986
    128198 3b82:F (2.35) BS01 NAD 2.4.2.36 GO:0047286 ... P11439 18583986
    128199 3b86:A (2.0) BS01 EOH ? GO:0005549 ... O02372 18234222
    128200 3b86:B (2.0) BS01 EOH ? GO:0005549 ... O02372 18234222

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).