SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    130801 3c96:A (1.9) BS01 FAD 1.14.13.218 GO:0004497 ... Q9HWG9 N/A
    130802 3c9c:A (3.2) BS01 peptide ? GO:0000122 ... Q24572 18443147
    130803 3c9e:A (1.8) BS01 BDP 3.4.22.38 GO:0006508 ... P43235 18692071
    130804 3c9e:A (1.8) BS02 ASG 3.4.22.38 GO:0006508 ... P43235 18692071
    130805 3c9e:A (1.8) BS03 BDP 3.4.22.38 GO:0006508 ... P43235 18692071
    130806 3c9e:A (1.8) BS04 ASG 3.4.22.38 GO:0006508 ... P43235 18692071
    130807 3c9e:A (1.8) BS05 ASG 3.4.22.38 GO:0006508 ... P43235 18692071
    130808 3c9e:A (1.8) BS06 CA 3.4.22.38 GO:0006508 ... P43235 18692071
    130809 3c9e:A (1.8) BS07 E64 3.4.22.38 GO:0006508 ... P43235 18692071
    130810 3c9f:A (1.9) BS01 ZN ? GO:0009166 ... Q5A5Q7 N/A
    130811 3c9f:B (1.9) BS01 ZN ? GO:0009166 ... Q5A5Q7 N/A
    130812 3c9h:A (1.9) BS01 MG ? N/A Q7CWZ6 N/A
    130813 3c9h:B (1.9) BS01 MG ? N/A Q7CWZ6 N/A
    130814 3c9i:A (1.95) BS01 CA ? GO:0044694 ... P35837 19241380
    130815 3c9i:B (1.95) BS01 CA ? GO:0044694 ... P35837 19241380
    130816 3c9i:B (1.95) BS02 XE ? GO:0044694 ... P35837 19241380
    130817 3c9i:C (1.95) BS01 XE ? GO:0044694 ... P35837 19241380
    130818 3c9i:C (1.95) BS02 XE ? GO:0044694 ... P35837 19241380
    130819 3c9i:C (1.95) BS03 CA ? GO:0044694 ... P35837 19241380
    130820 3c9i:C (1.95) BS04 XE ? GO:0044694 ... P35837 19241380
    130821 3c9i:D (1.95) BS01 CA ? GO:0044694 ... P35837 19241380
    130822 3c9i:E (1.95) BS01 XE ? GO:0044694 ... P35837 19241380
    130823 3c9i:E (1.95) BS02 CA ? GO:0044694 ... P35837 19241380
    130824 3c9i:F (1.95) BS01 XE ? GO:0044694 ... P35837 19241380
    130825 3c9i:F (1.95) BS02 CA ? GO:0044694 ... P35837 19241380
    130826 3c9l:A (2.646) BS01 ZN ? GO:0000139 ... P02699 18645239
    130827 3c9l:A (2.646) BS02 RET ? GO:0000139 ... P02699 18645239
    130828 3c9l:A (2.646) BS03 C8E ? GO:0000139 ... P02699 18645239
    130829 3c9l:A (2.646) BS04 C8E ? GO:0000139 ... P02699 18645239
    130830 3c9l:A (2.646) BS05 C8E ? GO:0000139 ... P02699 18645239
    130831 3c9m:A (3.4) BS01 RET ? GO:0000139 ... P02699 18645239
    130832 3c9n:A (1.87) BS01 peptide ? N/A P01889 18540051
    130833 3c9q:A (1.5) BS01 peptide 3.5.1.122 GO:0005515 ... Q96HA8 N/A
    130834 3c9q:A (1.5) BS02 CO3 3.5.1.122 GO:0005515 ... Q96HA8 N/A
    130835 3c9r:A (2.3) BS01 MG 2.7.4.16 GO:0000287 ... O67883 18311927
    130836 3c9r:A (2.3) BS02 MG 2.7.4.16 GO:0000287 ... O67883 18311927
    130837 3c9r:A (2.3) BS03 ATP 2.7.4.16 GO:0000287 ... O67883 18311927
    130838 3c9r:A (2.3) BS04 ATP 2.7.4.16 GO:0000287 ... O67883 18311927
    130839 3c9r:B (2.3) BS01 ATP 2.7.4.16 GO:0000287 ... O67883 18311927
    130840 3c9r:B (2.3) BS02 MG 2.7.4.16 GO:0000287 ... O67883 18311927
    130841 3c9r:B (2.3) BS03 MG 2.7.4.16 GO:0000287 ... O67883 18311927
    130842 3c9r:B (2.3) BS04 ATP 2.7.4.16 GO:0000287 ... O67883 18311927
    130843 3c9s:A (2.2) BS01 MG 2.7.4.16 GO:0000287 ... O67883 18311927
    130844 3c9s:A (2.2) BS02 MG 2.7.4.16 GO:0000287 ... O67883 18311927
    130845 3c9s:A (2.2) BS03 MG 2.7.4.16 GO:0000287 ... O67883 18311927
    130846 3c9s:A (2.2) BS04 ACP 2.7.4.16 GO:0000287 ... O67883 18311927
    130847 3c9s:A (2.2) BS05 ACP 2.7.4.16 GO:0000287 ... O67883 18311927
    130848 3c9s:B (2.2) BS01 ACP 2.7.4.16 GO:0000287 ... O67883 18311927
    130849 3c9s:B (2.2) BS02 MG 2.7.4.16 GO:0000287 ... O67883 18311927
    130850 3c9s:B (2.2) BS03 MG 2.7.4.16 GO:0000287 ... O67883 18311927
    130851 3c9s:B (2.2) BS04 MG 2.7.4.16 GO:0000287 ... O67883 18311927
    130852 3c9s:B (2.2) BS05 ACP 2.7.4.16 GO:0000287 ... O67883 18311927
    130853 3c9t:A (2.6) BS01 MG 2.7.4.16 GO:0000287 ... O67883 18311927
    130854 3c9t:A (2.6) BS02 MG 2.7.4.16 GO:0000287 ... O67883 18311927
    130855 3c9t:A (2.6) BS03 MG 2.7.4.16 GO:0000287 ... O67883 18311927
    130856 3c9t:A (2.6) BS04 TPS 2.7.4.16 GO:0000287 ... O67883 18311927
    130857 3c9t:A (2.6) BS05 ACP 2.7.4.16 GO:0000287 ... O67883 18311927
    130858 3c9t:A (2.6) BS06 ACP 2.7.4.16 GO:0000287 ... O67883 18311927
    130859 3c9t:B (2.6) BS01 ACP 2.7.4.16 GO:0000287 ... O67883 18311927
    130860 3c9t:B (2.6) BS02 MG 2.7.4.16 GO:0000287 ... O67883 18311927
    130861 3c9t:B (2.6) BS03 MG 2.7.4.16 GO:0000287 ... O67883 18311927
    130862 3c9t:B (2.6) BS04 MG 2.7.4.16 GO:0000287 ... O67883 18311927
    130863 3c9t:B (2.6) BS05 ACP 2.7.4.16 GO:0000287 ... O67883 18311927
    130864 3c9t:B (2.6) BS06 TPS 2.7.4.16 GO:0000287 ... O67883 18311927
    130865 3c9u:A (1.48) BS01 MG 2.7.4.16 GO:0000287 ... O67883 18311927
    130866 3c9u:A (1.48) BS02 MG 2.7.4.16 GO:0000287 ... O67883 18311927
    130867 3c9u:A (1.48) BS03 MG 2.7.4.16 GO:0000287 ... O67883 18311927
    130868 3c9u:A (1.48) BS04 TPP 2.7.4.16 GO:0000287 ... O67883 18311927
    130869 3c9u:A (1.48) BS05 ADP 2.7.4.16 GO:0000287 ... O67883 18311927
    130870 3c9u:A (1.48) BS06 ADP 2.7.4.16 GO:0000287 ... O67883 18311927
    130871 3c9u:B (1.48) BS01 ADP 2.7.4.16 GO:0000287 ... O67883 18311927
    130872 3c9u:B (1.48) BS02 MG 2.7.4.16 GO:0000287 ... O67883 18311927
    130873 3c9u:B (1.48) BS03 MG 2.7.4.16 GO:0000287 ... O67883 18311927
    130874 3c9u:B (1.48) BS04 MG 2.7.4.16 GO:0000287 ... O67883 18311927
    130875 3c9u:B (1.48) BS05 ADP 2.7.4.16 GO:0000287 ... O67883 18311927
    130876 3c9u:B (1.48) BS06 TPP 2.7.4.16 GO:0000287 ... O67883 18311927
    130877 3c9w:A (2.5) BS01 HMY 2.7.11.24 GO:0000165 ... P63086 18571434
    130878 3c9w:B (2.5) BS01 HMY 2.7.11.24 GO:0000165 ... P63086 18571434
    130879 3ca1:A (1.55) BS01 GLA 3.2.2.22 N/A P33183 18798567
    130880 3ca1:A (1.55) BS02 GLA 3.2.2.22 N/A P33183 18798567
    130881 3ca2:A (2.0) BS01 HG 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 3151020
    130882 3ca2:A (2.0) BS02 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 3151020
    130883 3ca2:A (2.0) BS03 AMS 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 3151020
    130884 3ca4:A (1.55) BS01 GAL 3.2.2.22 N/A P33183 18798567
    130885 3ca4:A (1.55) BS02 GAL 3.2.2.22 N/A P33183 18798567
    130886 3ca5:A (1.55) BS01 AMG 3.2.2.22 N/A P33183 18798567
    130887 3ca5:A (1.55) BS02 AMG 3.2.2.22 N/A P33183 18798567
    130888 3cag:A (1.9) BS01 ARG ? GO:0003700 ... P9WPY9 18703843
    130889 3cag:A (1.9) BS02 ARG ? GO:0003700 ... P9WPY9 18703843
    130890 3cag:A (1.9) BS03 ARG ? GO:0003700 ... P9WPY9 18703843
    130891 3cag:B (1.9) BS01 ARG ? GO:0003700 ... P9WPY9 18703843
    130892 3cag:B (1.9) BS02 ARG ? GO:0003700 ... P9WPY9 18703843
    130893 3cag:B (1.9) BS03 ARG ? GO:0003700 ... P9WPY9 18703843
    130894 3cag:C (1.9) BS01 ARG ? GO:0003700 ... P9WPY9 18703843
    130895 3cag:C (1.9) BS02 ARG ? GO:0003700 ... P9WPY9 18703843
    130896 3cag:C (1.9) BS03 ARG ? GO:0003700 ... P9WPY9 18703843
    130897 3cag:D (1.9) BS01 ARG ? GO:0003700 ... P9WPY9 18703843
    130898 3cag:D (1.9) BS02 ARG ? GO:0003700 ... P9WPY9 18703843
    130899 3cag:D (1.9) BS03 ARG ? GO:0003700 ... P9WPY9 18703843
    130900 3cag:E (1.9) BS01 ARG ? GO:0003700 ... P9WPY9 18703843
    130901 3cag:E (1.9) BS02 ARG ? GO:0003700 ... P9WPY9 18703843
    130902 3cag:E (1.9) BS03 ARG ? GO:0003700 ... P9WPY9 18703843
    130903 3cag:F (1.9) BS01 ARG ? GO:0003700 ... P9WPY9 18703843
    130904 3cag:F (1.9) BS02 ARG ? GO:0003700 ... P9WPY9 18703843
    130905 3cah:A (1.55) BS01 FCA 3.2.2.22 N/A P33183 18798567
    130906 3caj:A (1.8) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 18359629
    130907 3caj:A (1.8) BS02 EZL 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 18359629 MOAD: Ki=8nM
    BindingDB: Ki=8nM, IC50=3nM, Kd=0.71nM
    130908 3cak:A (1.83) BS01 CO 3.1.8.1 GO:0004063 ... P0A434 18702530
    130909 3cak:A (1.83) BS02 CO 3.1.8.1 GO:0004063 ... P0A434 18702530
    130910 3cak:A (1.83) BS03 DPF 3.1.8.1 GO:0004063 ... P0A434 18702530
    130911 3cak:B (1.83) BS01 CO 3.1.8.1 GO:0004063 ... P0A434 18702530
    130912 3cak:B (1.83) BS02 CO 3.1.8.1 GO:0004063 ... P0A434 18702530
    130913 3cak:B (1.83) BS03 EFS 3.1.8.1 GO:0004063 ... P0A434 18702530
    130914 3cal:A (1.7) BS01 peptide ? GO:0005576 ... P02751 18713862
    130915 3cal:A (1.7) BS02 peptide ? GO:0005576 ... P02751 18713862
    130916 3cal:C (1.7) BS01 peptide ? GO:0005576 ... P02751 18713862
    130917 3cao:A (1.6) BS01 ZN ? GO:0009055 ... P94690 10398589
    130918 3cao:A (1.6) BS02 HEM ? GO:0009055 ... P94690 10398589
    130919 3cao:A (1.6) BS03 HEM ? GO:0009055 ... P94690 10398589
    130920 3cao:A (1.6) BS04 HEM ? GO:0009055 ... P94690 10398589
    130921 3cao:A (1.6) BS05 HEM ? GO:0009055 ... P94690 10398589
    130922 3caq:A (2.2) BS01 NDP 1.3.1.3 GO:0004032 ... P51857 19075558 MOAD: Kd=528nM
    130923 3caq:B (2.2) BS01 NDP 1.3.1.3 GO:0004032 ... P51857 19075558 MOAD: Kd=528nM
    130924 3car:A (1.9) BS01 HEM ? GO:0009055 ... P94690 10398589
    130925 3car:A (1.9) BS02 HEM ? GO:0009055 ... P94690 10398589
    130926 3car:A (1.9) BS03 HEM ? GO:0009055 ... P94690 10398589
    130927 3car:A (1.9) BS04 HEM ? GO:0009055 ... P94690 10398589
    130928 3cas:A (2.0) BS01 NAP 1.3.1.3 GO:0004032 ... P51857 19075558
    130929 3cas:A (2.0) BS02 ASD 1.3.1.3 GO:0004032 ... P51857 19075558
    130930 3cas:B (2.0) BS01 NAP 1.3.1.3 GO:0004032 ... P51857 19075558
    130931 3cas:B (2.0) BS02 ASD 1.3.1.3 GO:0004032 ... P51857 19075558
    130932 3cav:A (1.9) BS01 NAP 1.3.1.3 GO:0004032 ... P51857 18624455
    130933 3cav:A (1.9) BS02 CI2 1.3.1.3 GO:0004032 ... P51857 18624455
    130934 3cav:B (1.9) BS01 NAP 1.3.1.3 GO:0004032 ... P51857 18624455
    130935 3cav:B (1.9) BS02 CI2 1.3.1.3 GO:0004032 ... P51857 18624455
    130936 3caw:A (1.87) BS01 MG 4.2.1.113 GO:0042372 ... Q6MQC7 24872444
    130937 3caw:B (1.87) BS01 MG 4.2.1.113 GO:0042372 ... Q6MQC7 24872444
    130938 3cb0:A (1.6) BS01 FMN 1.14.14.9 GO:0006208 ... Q8YHT7 18263579 MOAD: Kd=648nM
    130939 3cb0:B (1.6) BS01 FMN 1.14.14.9 GO:0006208 ... Q8YHT7 18263579 MOAD: Kd=648nM
    130940 3cb2:A (2.303) BS01 GDP 3.6.5.6 GO:0000070 ... P23258 18388201
    130941 3cb2:B (2.303) BS01 GDP 3.6.5.6 GO:0000070 ... P23258 18388201
    130942 3cb3:A (2.0) BS01 MG 4.2.1.-
    4.2.1.42
    GO:0000287 ... A0ACD6B889 N/A
    130943 3cb3:A (2.0) BS02 MG 4.2.1.-
    4.2.1.42
    GO:0000287 ... A0ACD6B889 N/A
    130944 3cb3:A (2.0) BS03 LGT 4.2.1.-
    4.2.1.42
    GO:0000287 ... A0ACD6B889 N/A
    130945 3cb3:B (2.0) BS01 MG 4.2.1.-
    4.2.1.42
    GO:0000287 ... A0ACD6B889 N/A
    130946 3cb3:B (2.0) BS02 MG 4.2.1.-
    4.2.1.42
    GO:0000287 ... A0ACD6B889 N/A
    130947 3cb3:B (2.0) BS03 LGT 4.2.1.-
    4.2.1.42
    GO:0000287 ... A0ACD6B889 N/A
    130948 3cb3:C (2.0) BS01 MG 4.2.1.-
    4.2.1.42
    GO:0000287 ... A0ACD6B889 N/A
    130949 3cb3:C (2.0) BS02 MG 4.2.1.-
    4.2.1.42
    GO:0000287 ... A0ACD6B889 N/A
    130950 3cb3:C (2.0) BS03 LGT 4.2.1.-
    4.2.1.42
    GO:0000287 ... A0ACD6B889 N/A
    130951 3cb3:D (2.0) BS01 MG 4.2.1.-
    4.2.1.42
    GO:0000287 ... A0ACD6B889 N/A
    130952 3cb3:D (2.0) BS02 MG 4.2.1.-
    4.2.1.42
    GO:0000287 ... A0ACD6B889 N/A
    130953 3cb3:D (2.0) BS03 LGT 4.2.1.-
    4.2.1.42
    GO:0000287 ... A0ACD6B889 N/A
    130954 3cb7:A (1.9) BS01 IPA 3.2.1.17 GO:0003796 ... Q7YT17 N/A
    130955 3cb8:A (2.77) BS01 peptide 1.97.1.4 GO:0003824 ... P0A9N4 18852451
    130956 3cb8:A (2.77) BS02 SAM 1.97.1.4 GO:0003824 ... P0A9N4 18852451
    130957 3cb8:A (2.77) BS03 SF4 1.97.1.4 GO:0003824 ... P0A9N4 18852451
    130958 3cbb:A (2.0) BS01 dna ? GO:0000978 ... P41235 18829458
    130959 3cbb:A (2.0) BS02 dna ? GO:0000978 ... P41235 18829458
    130960 3cbb:A (2.0) BS03 ZN ? GO:0000978 ... P41235 18829458
    130961 3cbb:A (2.0) BS04 ZN ? GO:0000978 ... P41235 18829458
    130962 3cbb:B (2.0) BS01 dna ? GO:0000978 ... P41235 18829458
    130963 3cbb:B (2.0) BS02 dna ? GO:0000978 ... P41235 18829458
    130964 3cbb:B (2.0) BS03 ZN ? GO:0000978 ... P41235 18829458
    130965 3cbb:B (2.0) BS04 ZN ? GO:0000978 ... P41235 18829458
    130966 3cbc:A (2.17) BS01 DBS ? GO:0036094 ... P80188 18680288
    130967 3cbc:B (2.17) BS01 DBS ? GO:0036094 ... P80188 18680288
    130968 3cbc:C (2.17) BS01 DBS ? GO:0036094 ... P80188 18680288
    130969 3cbd:A (2.65) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    130970 3cbd:A (2.65) BS02 140 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A BindingDB: Kd=82nM
    130971 3cbd:B (2.65) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A
    130972 3cbd:B (2.65) BS02 140 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 N/A BindingDB: Kd=82nM
    130973 3cbf:A (1.67) BS01 N5F 2.6.1.39 GO:0008483 ... Q72LL6 18831049
    130974 3cbf:B (1.67) BS01 N5F 2.6.1.39 GO:0008483 ... Q72LL6 18831049
    130975 3cbg:A (2.0) BS01 MG 2.1.1.- GO:0008171 ... Q55813 18502765
    130976 3cbg:A (2.0) BS02 SAH 2.1.1.- GO:0008171 ... Q55813 18502765
    130977 3cbg:A (2.0) BS03 FER 2.1.1.- GO:0008171 ... Q55813 18502765
    130978 3cbg:A (2.0) BS04 4FE 2.1.1.- GO:0008171 ... Q55813 18502765
    130979 3cbi:A (3.15) BS01 AJM 3.1.1.4 GO:0004623 ... P59071 N/A
    130980 3cbi:A (3.15) BS02 ANN 3.1.1.4 GO:0004623 ... P59071 N/A
    130981 3cbi:B (3.15) BS01 AJM 3.1.1.4 GO:0004623 ... P59071 N/A
    130982 3cbi:B (3.15) BS02 ANN 3.1.1.4 GO:0004623 ... P59071 N/A
    130983 3cbi:C (3.15) BS01 AJM 3.1.1.4 GO:0004623 ... P59071 N/A
    130984 3cbi:C (3.15) BS02 ANN 3.1.1.4 GO:0004623 ... P59071 N/A
    130985 3cbi:D (3.15) BS01 AJM 3.1.1.4 GO:0004623 ... P59071 N/A
    130986 3cbi:D (3.15) BS02 ANN 3.1.1.4 GO:0004623 ... P59071 N/A
    130987 3cbl:A (1.75) BS01 peptide 2.7.10.2 GO:0004672 ... P07332 18775312
    130988 3cbl:A (1.75) BS02 STU 2.7.10.2 GO:0004672 ... P07332 18775312
    130989 3cbl:A (1.75) BS03 STU 2.7.10.2 GO:0004672 ... P07332 18775312
    130990 3cbl:A (1.75) BS04 STU 2.7.10.2 GO:0004672 ... P07332 18775312
    130991 3cbm:A (1.69) BS01 peptide 2.1.1.364 GO:0005694 ... Q8WTS6 18471979
    130992 3cbm:A (1.69) BS02 SAH 2.1.1.364 GO:0005694 ... Q8WTS6 18471979 BindingDB: IC50=30000nM
    130993 3cbo:A (1.65) BS01 peptide 2.1.1.364 GO:0005694 ... Q8WTS6 18471979
    130994 3cbo:A (1.65) BS02 SAH 2.1.1.364 GO:0005694 ... Q8WTS6 18471979 BindingDB: IC50=30000nM
    130995 3cbp:A (1.42) BS01 peptide 2.1.1.364 GO:0005694 ... Q8WTS6 18471979
    130996 3cbp:A (1.42) BS02 SFG 2.1.1.364 GO:0005694 ... Q8WTS6 18471979 BindingDB: IC50=2500nM
    130997 3cbq:A (1.82) BS01 GDP ? GO:0003924 ... Q8IYK8 N/A
    130998 3cbs:A (2.0) BS01 R12 ? GO:0001972 ... P29373 10531482 MOAD: ic50=58nM
    130999 3cbt:A (1.7) BS01 MG 3.1.3.5 N/A Q9FBN7 N/A
    131000 3cc2:1 (2.4) BS01 rna ? GO:0003723 ... P32410 18455733

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).