SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    131201 3ccj:X (3.3) BS01 rna ? GO:0002181 ... P18138 18455733
    131202 3ccj:Y (3.3) BS01 rna ? GO:0000166 ... P12736 18455733
    131203 3ccj:Z (3.3) BS01 rna ? GO:0003735 ... P60619 18455733
    131204 3ccl:1 (2.9) BS01 rna ? GO:0003723 ... P32410 18455733
    131205 3ccl:2 (2.9) BS01 rna ? GO:0003735 ... P22452 18455733
    131206 3ccl:3 (2.9) BS01 rna ? GO:0003735 ... P32411 18455733
    131207 3ccl:A (2.9) BS01 rna ? GO:0002181 ... P20276 18455733
    131208 3ccl:A (2.9) BS02 MG ? GO:0002181 ... P20276 18455733
    131209 3ccl:B (2.9) BS01 rna ? GO:0003723 ... P20279 18455733
    131210 3ccl:C (2.9) BS01 rna ? GO:0003735 ... P12735 18455733
    131211 3ccl:D (2.9) BS01 rna ? GO:0000049 ... P14124 18455733
    131212 3ccl:D (2.9) BS02 rna ? GO:0000049 ... P14124 18455733
    131213 3ccl:E (2.9) BS01 rna ? GO:0002181 ... P14135 18455733
    131214 3ccl:F (2.9) BS01 rna ? GO:0001682 ... P12743 18455733
    131215 3ccl:H (2.9) BS01 rna ? GO:0003735 ... P60617 18455733
    131216 3ccl:I (2.9) BS01 rna ? GO:0003735 ... P14122 18455733
    131217 3ccl:J (2.9) BS01 rna ? GO:0003729 ... P29198 18455733
    131218 3ccl:K (2.9) BS01 rna ? GO:0003735 ... P22450 18455733
    131219 3ccl:L (2.9) BS01 rna ? GO:0003735 ... P12737 18455733
    131220 3ccl:M (2.9) BS01 rna ? GO:0002181 ... P60618 18455733
    131221 3ccl:N (2.9) BS01 rna ? GO:0000027 ... P14123 18455733
    131222 3ccl:N (2.9) BS02 rna ? GO:0000027 ... P14123 18455733
    131223 3ccl:O (2.9) BS01 rna ? GO:0003723 ... P12733 18455733
    131224 3ccl:P (2.9) BS01 rna ? GO:0003723 ... P14119 18455733
    131225 3ccl:Q (2.9) BS01 rna ? GO:0003735 ... P12734 18455733
    131226 3ccl:Q (2.9) BS02 rna ? GO:0003735 ... P12734 18455733
    131227 3ccl:R (2.9) BS01 rna ? GO:0002181 ... P10970 18455733
    131228 3ccl:S (2.9) BS01 rna ? GO:0003735 ... P12732 18455733
    131229 3ccl:T (2.9) BS01 rna ? GO:0003723 ... P10972 18455733
    131230 3ccl:T (2.9) BS02 MG ? GO:0003723 ... P10972 18455733
    131231 3ccl:U (2.9) BS01 rna ? GO:0003735 ... P14116 18455733
    131232 3ccl:V (2.9) BS01 rna ? GO:0003735 ... P10971 18455733
    131233 3ccl:W (2.9) BS01 rna ? GO:0000463 ... P14121 18455733
    131234 3ccl:W (2.9) BS02 rna ? GO:0000463 ... P14121 18455733
    131235 3ccl:X (2.9) BS01 rna ? GO:0002181 ... P18138 18455733
    131236 3ccl:Y (2.9) BS01 rna ? GO:0000166 ... P12736 18455733
    131237 3ccl:Y (2.9) BS02 MG ? GO:0000166 ... P12736 18455733
    131238 3ccl:Z (2.9) BS01 rna ? GO:0003735 ... P60619 18455733
    131239 3ccm:1 (2.55) BS01 rna ? GO:0003723 ... P32410 18455733
    131240 3ccm:2 (2.55) BS01 rna ? GO:0003735 ... P22452 18455733
    131241 3ccm:3 (2.55) BS01 rna ? GO:0003735 ... P32411 18455733
    131242 3ccm:A (2.55) BS01 rna ? GO:0002181 ... P20276 18455733
    131243 3ccm:A (2.55) BS02 MG ? GO:0002181 ... P20276 18455733
    131244 3ccm:B (2.55) BS01 rna ? GO:0003723 ... P20279 18455733
    131245 3ccm:C (2.55) BS01 rna ? GO:0003735 ... P12735 18455733
    131246 3ccm:D (2.55) BS01 rna ? GO:0000049 ... P14124 18455733
    131247 3ccm:D (2.55) BS02 rna ? GO:0000049 ... P14124 18455733
    131248 3ccm:E (2.55) BS01 rna ? GO:0002181 ... P14135 18455733
    131249 3ccm:F (2.55) BS01 rna ? GO:0001682 ... P12743 18455733
    131250 3ccm:H (2.55) BS01 rna ? GO:0003735 ... P60617 18455733
    131251 3ccm:I (2.55) BS01 rna ? GO:0003735 ... P14122 18455733
    131252 3ccm:J (2.55) BS01 rna ? GO:0003729 ... P29198 18455733
    131253 3ccm:K (2.55) BS01 rna ? GO:0003735 ... P22450 18455733
    131254 3ccm:L (2.55) BS01 rna ? GO:0003735 ... P12737 18455733
    131255 3ccm:M (2.55) BS01 rna ? GO:0002181 ... P60618 18455733
    131256 3ccm:N (2.55) BS01 rna ? GO:0000027 ... P14123 18455733
    131257 3ccm:N (2.55) BS02 rna ? GO:0000027 ... P14123 18455733
    131258 3ccm:O (2.55) BS01 rna ? GO:0003723 ... P12733 18455733
    131259 3ccm:P (2.55) BS01 rna ? GO:0003723 ... P14119 18455733
    131260 3ccm:Q (2.55) BS01 rna ? GO:0003735 ... P12734 18455733
    131261 3ccm:Q (2.55) BS02 rna ? GO:0003735 ... P12734 18455733
    131262 3ccm:R (2.55) BS01 rna ? GO:0002181 ... P10970 18455733
    131263 3ccm:S (2.55) BS01 rna ? GO:0003735 ... P12732 18455733
    131264 3ccm:T (2.55) BS01 rna ? GO:0003723 ... P10972 18455733
    131265 3ccm:T (2.55) BS02 MG ? GO:0003723 ... P10972 18455733
    131266 3ccm:U (2.55) BS01 rna ? GO:0003735 ... P14116 18455733
    131267 3ccm:V (2.55) BS01 rna ? GO:0003735 ... P10971 18455733
    131268 3ccm:W (2.55) BS01 rna ? GO:0000463 ... P14121 18455733
    131269 3ccm:W (2.55) BS02 rna ? GO:0000463 ... P14121 18455733
    131270 3ccm:X (2.55) BS01 rna ? GO:0002181 ... P18138 18455733
    131271 3ccm:Y (2.55) BS01 rna ? GO:0000166 ... P12736 18455733
    131272 3ccm:Y (2.55) BS02 MG ? GO:0000166 ... P12736 18455733
    131273 3ccm:Z (2.55) BS01 rna ? GO:0003735 ... P60619 18455733
    131274 3ccn:A (1.9) BS01 LKG 2.7.10.1 GO:0004672 ... P08581 18426196 MOAD: ic50=120nM
    BindingDB: IC50=120nM
    131275 3ccp:A (2.2) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 2169873
    131276 3ccq:1 (2.9) BS01 rna ? GO:0003723 ... P32410 18455733
    131277 3ccq:2 (2.9) BS01 rna ? GO:0003735 ... P22452 18455733
    131278 3ccq:3 (2.9) BS01 rna ? GO:0003735 ... P32411 18455733
    131279 3ccq:A (2.9) BS01 rna ? GO:0002181 ... P20276 18455733
    131280 3ccq:A (2.9) BS02 MG ? GO:0002181 ... P20276 18455733
    131281 3ccq:B (2.9) BS01 rna ? GO:0003723 ... P20279 18455733
    131282 3ccq:C (2.9) BS01 rna ? GO:0003735 ... P12735 18455733
    131283 3ccq:D (2.9) BS01 rna ? GO:0000049 ... P14124 18455733
    131284 3ccq:D (2.9) BS02 rna ? GO:0000049 ... P14124 18455733
    131285 3ccq:E (2.9) BS01 rna ? GO:0002181 ... P14135 18455733
    131286 3ccq:F (2.9) BS01 rna ? GO:0001682 ... P12743 18455733
    131287 3ccq:H (2.9) BS01 rna ? GO:0003735 ... P60617 18455733
    131288 3ccq:I (2.9) BS01 rna ? GO:0003735 ... P14122 18455733
    131289 3ccq:J (2.9) BS01 rna ? GO:0003729 ... P29198 18455733
    131290 3ccq:K (2.9) BS01 rna ? GO:0003735 ... P22450 18455733
    131291 3ccq:L (2.9) BS01 rna ? GO:0003735 ... P12737 18455733
    131292 3ccq:M (2.9) BS01 rna ? GO:0002181 ... P60618 18455733
    131293 3ccq:N (2.9) BS01 rna ? GO:0000027 ... P14123 18455733
    131294 3ccq:N (2.9) BS02 rna ? GO:0000027 ... P14123 18455733
    131295 3ccq:O (2.9) BS01 rna ? GO:0003723 ... P12733 18455733
    131296 3ccq:P (2.9) BS01 rna ? GO:0003723 ... P14119 18455733
    131297 3ccq:Q (2.9) BS01 rna ? GO:0003735 ... P12734 18455733
    131298 3ccq:Q (2.9) BS02 rna ? GO:0003735 ... P12734 18455733
    131299 3ccq:R (2.9) BS01 rna ? GO:0002181 ... P10970 18455733
    131300 3ccq:S (2.9) BS01 rna ? GO:0003735 ... P12732 18455733
    131301 3ccq:T (2.9) BS01 rna ? GO:0003723 ... P10972 18455733
    131302 3ccq:T (2.9) BS02 MG ? GO:0003723 ... P10972 18455733
    131303 3ccq:U (2.9) BS01 rna ? GO:0003735 ... P14116 18455733
    131304 3ccq:V (2.9) BS01 rna ? GO:0003735 ... P10971 18455733
    131305 3ccq:W (2.9) BS01 rna ? GO:0000463 ... P14121 18455733
    131306 3ccq:W (2.9) BS02 rna ? GO:0000463 ... P14121 18455733
    131307 3ccq:X (2.9) BS01 rna ? GO:0002181 ... P18138 18455733
    131308 3ccq:Y (2.9) BS01 rna ? GO:0000166 ... P12736 18455733
    131309 3ccq:Y (2.9) BS02 MG ? GO:0000166 ... P12736 18455733
    131310 3ccq:Z (2.9) BS01 rna ? GO:0003735 ... P60619 18455733
    131311 3ccr:1 (3.0) BS01 rna ? GO:0003723 ... P32410 18455733
    131312 3ccr:2 (3.0) BS01 rna ? GO:0003735 ... P22452 18455733
    131313 3ccr:3 (3.0) BS01 rna ? GO:0003735 ... P32411 18455733
    131314 3ccr:A (3.0) BS01 rna ? GO:0002181 ... P20276 18455733
    131315 3ccr:A (3.0) BS02 MG ? GO:0002181 ... P20276 18455733
    131316 3ccr:B (3.0) BS01 rna ? GO:0003723 ... P20279 18455733
    131317 3ccr:B (3.0) BS02 MG ? GO:0003723 ... P20279 18455733
    131318 3ccr:C (3.0) BS01 rna ? GO:0003735 ... P12735 18455733
    131319 3ccr:D (3.0) BS01 rna ? GO:0000049 ... P14124 18455733
    131320 3ccr:D (3.0) BS02 rna ? GO:0000049 ... P14124 18455733
    131321 3ccr:E (3.0) BS01 rna ? GO:0002181 ... P14135 18455733
    131322 3ccr:F (3.0) BS01 rna ? GO:0001682 ... P12743 18455733
    131323 3ccr:H (3.0) BS01 rna ? GO:0003735 ... P60617 18455733
    131324 3ccr:H (3.0) BS02 rna ? GO:0003735 ... P60617 18455733
    131325 3ccr:I (3.0) BS01 rna ? GO:0003735 ... P14122 18455733
    131326 3ccr:J (3.0) BS01 rna ? GO:0003729 ... P29198 18455733
    131327 3ccr:K (3.0) BS01 rna ? GO:0003735 ... P22450 18455733
    131328 3ccr:L (3.0) BS01 rna ? GO:0003735 ... P12737 18455733
    131329 3ccr:M (3.0) BS01 rna ? GO:0002181 ... P60618 18455733
    131330 3ccr:N (3.0) BS01 rna ? GO:0000027 ... P14123 18455733
    131331 3ccr:N (3.0) BS02 rna ? GO:0000027 ... P14123 18455733
    131332 3ccr:O (3.0) BS01 rna ? GO:0003723 ... P12733 18455733
    131333 3ccr:P (3.0) BS01 rna ? GO:0003723 ... P14119 18455733
    131334 3ccr:Q (3.0) BS01 rna ? GO:0003735 ... P12734 18455733
    131335 3ccr:Q (3.0) BS02 rna ? GO:0003735 ... P12734 18455733
    131336 3ccr:R (3.0) BS01 rna ? GO:0002181 ... P10970 18455733
    131337 3ccr:S (3.0) BS01 rna ? GO:0003735 ... P12732 18455733
    131338 3ccr:T (3.0) BS01 rna ? GO:0003723 ... P10972 18455733
    131339 3ccr:T (3.0) BS02 MG ? GO:0003723 ... P10972 18455733
    131340 3ccr:U (3.0) BS01 rna ? GO:0003735 ... P14116 18455733
    131341 3ccr:V (3.0) BS01 rna ? GO:0003735 ... P10971 18455733
    131342 3ccr:W (3.0) BS01 rna ? GO:0000463 ... P14121 18455733
    131343 3ccr:W (3.0) BS02 rna ? GO:0000463 ... P14121 18455733
    131344 3ccr:X (3.0) BS01 rna ? GO:0002181 ... P18138 18455733
    131345 3ccr:Y (3.0) BS01 rna ? GO:0000166 ... P12736 18455733
    131346 3ccr:Y (3.0) BS02 MG ? GO:0000166 ... P12736 18455733
    131347 3ccr:Z (3.0) BS01 rna ? GO:0003735 ... P60619 18455733
    131348 3ccs:1 (2.95) BS01 rna ? GO:0003723 ... P32410 18455733
    131349 3ccs:2 (2.95) BS01 rna ? GO:0003735 ... P22452 18455733
    131350 3ccs:3 (2.95) BS01 rna ? GO:0003735 ... P32411 18455733
    131351 3ccs:A (2.95) BS01 rna ? GO:0002181 ... P20276 18455733
    131352 3ccs:A (2.95) BS02 MG ? GO:0002181 ... P20276 18455733
    131353 3ccs:A (2.95) BS03 MG ? GO:0002181 ... P20276 18455733
    131354 3ccs:B (2.95) BS01 rna ? GO:0003723 ... P20279 18455733
    131355 3ccs:C (2.95) BS01 rna ? GO:0003735 ... P12735 18455733
    131356 3ccs:D (2.95) BS01 rna ? GO:0000049 ... P14124 18455733
    131357 3ccs:D (2.95) BS02 rna ? GO:0000049 ... P14124 18455733
    131358 3ccs:E (2.95) BS01 rna ? GO:0002181 ... P14135 18455733
    131359 3ccs:F (2.95) BS01 rna ? GO:0001682 ... P12743 18455733
    131360 3ccs:H (2.95) BS01 rna ? GO:0003735 ... P60617 18455733
    131361 3ccs:I (2.95) BS01 rna ? GO:0003735 ... P14122 18455733
    131362 3ccs:J (2.95) BS01 rna ? GO:0003729 ... P29198 18455733
    131363 3ccs:K (2.95) BS01 rna ? GO:0003735 ... P22450 18455733
    131364 3ccs:L (2.95) BS01 rna ? GO:0003735 ... P12737 18455733
    131365 3ccs:M (2.95) BS01 rna ? GO:0002181 ... P60618 18455733
    131366 3ccs:N (2.95) BS01 rna ? GO:0000027 ... P14123 18455733
    131367 3ccs:N (2.95) BS02 rna ? GO:0000027 ... P14123 18455733
    131368 3ccs:O (2.95) BS01 rna ? GO:0003723 ... P12733 18455733
    131369 3ccs:P (2.95) BS01 rna ? GO:0003723 ... P14119 18455733
    131370 3ccs:Q (2.95) BS01 rna ? GO:0003735 ... P12734 18455733
    131371 3ccs:Q (2.95) BS02 rna ? GO:0003735 ... P12734 18455733
    131372 3ccs:R (2.95) BS01 rna ? GO:0002181 ... P10970 18455733
    131373 3ccs:S (2.95) BS01 rna ? GO:0003735 ... P12732 18455733
    131374 3ccs:T (2.95) BS01 rna ? GO:0003723 ... P10972 18455733
    131375 3ccs:T (2.95) BS02 MG ? GO:0003723 ... P10972 18455733
    131376 3ccs:U (2.95) BS01 rna ? GO:0003735 ... P14116 18455733
    131377 3ccs:V (2.95) BS01 rna ? GO:0003735 ... P10971 18455733
    131378 3ccs:W (2.95) BS01 rna ? GO:0000463 ... P14121 18455733
    131379 3ccs:W (2.95) BS02 rna ? GO:0000463 ... P14121 18455733
    131380 3ccs:X (2.95) BS01 rna ? GO:0002181 ... P18138 18455733
    131381 3ccs:Y (2.95) BS01 rna ? GO:0000166 ... P12736 18455733
    131382 3ccs:Y (2.95) BS02 MG ? GO:0000166 ... P12736 18455733
    131383 3ccs:Z (2.95) BS01 rna ? GO:0003735 ... P60619 18455733
    131384 3cct:A (2.12) BS01 3HI 1.1.1.34 GO:0004420 ... P04035 18540668
    131385 3cct:A (2.12) BS02 3HI 1.1.1.34 GO:0004420 ... P04035 18540668
    131386 3cct:B (2.12) BS01 3HI 1.1.1.34 GO:0004420 ... P04035 18540668 MOAD: Kd=27.4nM
    131387 3cct:B (2.12) BS02 3HI 1.1.1.34 GO:0004420 ... P04035 18540668 MOAD: Kd=27.4nM
    131388 3cct:C (2.12) BS01 3HI 1.1.1.34 GO:0004420 ... P04035 18540668 MOAD: Kd=27.4nM
    131389 3cct:C (2.12) BS02 3HI 1.1.1.34 GO:0004420 ... P04035 18540668 MOAD: Kd=27.4nM
    131390 3cct:D (2.12) BS01 3HI 1.1.1.34 GO:0004420 ... P04035 18540668 MOAD: Kd=27.4nM
    131391 3cct:D (2.12) BS02 3HI 1.1.1.34 GO:0004420 ... P04035 18540668 MOAD: Kd=27.4nM
    131392 3ccu:1 (2.8) BS01 rna ? GO:0003723 ... P32410 18455733
    131393 3ccu:2 (2.8) BS01 rna ? GO:0003735 ... P22452 18455733
    131394 3ccu:3 (2.8) BS01 rna ? GO:0003735 ... P32411 18455733
    131395 3ccu:A (2.8) BS01 rna ? GO:0002181 ... P20276 18455733
    131396 3ccu:A (2.8) BS02 MG ? GO:0002181 ... P20276 18455733
    131397 3ccu:A (2.8) BS03 MG ? GO:0002181 ... P20276 18455733
    131398 3ccu:B (2.8) BS01 rna ? GO:0003723 ... P20279 18455733
    131399 3ccu:C (2.8) BS01 rna ? GO:0003735 ... P12735 18455733
    131400 3ccu:D (2.8) BS01 rna ? GO:0000049 ... P14124 18455733

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).