SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
  • Sort results by
    << < 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673 674 675 676 677 > >>
    Go to page

    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    133201 3cvw:A (3.2) BS01 dna ? GO:0005634 ... Q8SXK5 N/A
    133202 3cvw:A (3.2) BS02 dna ? GO:0005634 ... Q8SXK5 N/A
    133203 3cvw:A (3.2) BS03 FAD ? GO:0005634 ... Q8SXK5 N/A
    133204 3cvw:A (3.2) BS04 FO1 ? GO:0005634 ... Q8SXK5 N/A
    133205 3cvx:A (3.2) BS01 dna ? GO:0005634 ... Q8SXK5 N/A
    133206 3cvx:A (3.2) BS02 dna ? GO:0005634 ... Q8SXK5 N/A
    133207 3cvx:A (3.2) BS03 FAD ? GO:0005634 ... Q8SXK5 N/A
    133208 3cvy:A (2.7) BS01 dna ? GO:0005634 ... Q8SXK5 18956392
    133209 3cvy:A (2.7) BS02 dna ? GO:0005634 ... Q8SXK5 18956392
    133210 3cvy:A (2.7) BS03 FAD ? GO:0005634 ... Q8SXK5 18956392
    133211 3cvz:A (2.4) BS01 GLY ? N/A Q183M8 19183279
    133212 3cvz:C (2.4) BS01 GLY ? N/A Q183M8 19183279
    133213 3cvz:D (2.4) BS01 GLY ? N/A Q183M8 19183279
    133214 3cw2:B (2.8) BS01 peptide 3.6.5.3 GO:0000049 ... Q980A5 18675278
    133215 3cw7:A (2.3) BS01 dna 3.2.2.21 GO:0003824 ... P04395 18682218
    133216 3cw7:A (2.3) BS02 dna 3.2.2.21 GO:0003824 ... P04395 18682218
    133217 3cw7:B (2.3) BS01 dna 3.2.2.21 GO:0003824 ... P04395 18682218
    133218 3cw7:B (2.3) BS02 dna 3.2.2.21 GO:0003824 ... P04395 18682218
    133219 3cw7:C (2.3) BS01 dna 3.2.2.21 GO:0003824 ... P04395 18682218
    133220 3cw7:C (2.3) BS02 dna 3.2.2.21 GO:0003824 ... P04395 18682218
    133221 3cw7:D (2.3) BS01 dna 3.2.2.21 GO:0003824 ... P04395 18682218
    133222 3cw7:D (2.3) BS02 dna 3.2.2.21 GO:0003824 ... P04395 18682218
    133223 3cw8:X (2.25) BS01 00A 6.2.1.33 GO:0006631 ... Q8GN86 18620418
    133224 3cw9:A (2.0) BS01 AMP 6.2.1.33 GO:0006631 ... Q8GN86 18620418
    133225 3cw9:A (2.0) BS02 01A 6.2.1.33 GO:0006631 ... Q8GN86 18620418
    133226 3cw9:B (2.0) BS01 AMP 6.2.1.33 GO:0006631 ... Q8GN86 18620418
    133227 3cw9:B (2.0) BS02 01A 6.2.1.33 GO:0006631 ... Q8GN86 18620418
    133228 3cwa:A (2.4) BS01 dna 3.2.2.21 GO:0003824 ... P04395 18682218
    133229 3cwa:A (2.4) BS02 dna 3.2.2.21 GO:0003824 ... P04395 18682218
    133230 3cwa:B (2.4) BS01 dna 3.2.2.21 GO:0003824 ... P04395 18682218
    133231 3cwa:B (2.4) BS02 dna 3.2.2.21 GO:0003824 ... P04395 18682218
    133232 3cwa:C (2.4) BS01 dna 3.2.2.21 GO:0003824 ... P04395 18682218
    133233 3cwa:C (2.4) BS02 dna 3.2.2.21 GO:0003824 ... P04395 18682218
    133234 3cwa:D (2.4) BS01 dna 3.2.2.21 GO:0003824 ... P04395 18682218
    133235 3cwa:D (2.4) BS02 dna 3.2.2.21 GO:0003824 ... P04395 18682218
    133236 3cwb:C (3.51) BS01 HEM ? GO:0005737 ... P18946 18996700
    133237 3cwb:C (3.51) BS02 HEM ? GO:0005737 ... P18946 18996700
    133238 3cwb:C (3.51) BS03 ICX ? GO:0005737 ... P18946 18996700
    133239 3cwb:C (3.51) BS04 UQ ? GO:0005737 ... P18946 18996700
    133240 3cwb:D (3.51) BS01 HEC N/A GO:0009055 ... N/A 18996700
    133241 3cwb:E (3.51) BS01 FES 7.1.1.8 GO:0008121 ... Q5ZLR5 18996700
    133242 3cwb:P (3.51) BS01 AZI ? GO:0005737 ... P18946 18996700
    133243 3cwb:P (3.51) BS02 HEM ? GO:0005737 ... P18946 18996700
    133244 3cwb:P (3.51) BS03 HEM ? GO:0005737 ... P18946 18996700
    133245 3cwb:P (3.51) BS04 ICX ? GO:0005737 ... P18946 18996700
    133246 3cwb:P (3.51) BS05 UQ ? GO:0005737 ... P18946 18996700
    133247 3cwb:Q (3.51) BS01 HEC N/A GO:0009055 ... N/A 18996700
    133248 3cwb:R (3.51) BS01 FES 7.1.1.8 GO:0008121 ... Q5ZLR5 18996700
    133249 3cwd:A (2.4) BS01 peptide ? GO:0003677 ... P37231 18604218
    133250 3cwd:A (2.4) BS02 LNA ? GO:0003677 ... P37231 18604218
    133251 3cwd:A (2.4) BS03 LNB ? GO:0003677 ... P37231 18604218 BindingDB: IC50=410nM, EC50=45nM
    133252 3cwd:B (2.4) BS01 peptide ? GO:0003677 ... P37231 18604218
    133253 3cwd:B (2.4) BS02 LNA ? GO:0003677 ... P37231 18604218
    133254 3cwd:B (2.4) BS03 LNB ? GO:0003677 ... P37231 18604218 BindingDB: IC50=410nM, EC50=45nM
    133255 3cwe:A (1.6) BS01 825 3.1.3.48 GO:0004725 ... P18031 18477508 MOAD: ic50=0.12uM
    BindingDB: IC50=120nM, EC50=1200nM
    133256 3cwh:A (2.2) BS01 XUL 5.3.1.5 GO:0000287 ... P24300 18578508
    133257 3cwh:A (2.2) BS02 MG 5.3.1.5 GO:0000287 ... P24300 18578508
    133258 3cwh:A (2.2) BS03 MG 5.3.1.5 GO:0000287 ... P24300 18578508
    133259 3cwj:A (2.4) BS01 321 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13
    GO:0003723 ... P26663 18662878 MOAD: ic50<0.01uM
    BindingDB: IC50=<10nM, EC50=11nM
    133260 3cwj:B (2.4) BS01 321 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13
    GO:0003723 ... P26663 18662878 MOAD: ic50<0.01uM
    BindingDB: IC50=<10nM, EC50=11nM
    133261 3cwk:A (1.6) BS01 REA ? GO:0001972 ... P29373 19018099 MOAD: Kd=250nM
    133262 3cwq:A (2.47) BS01 ADP ? GO:0005524 ... Q6YRW8 N/A
    133263 3cwq:B (2.47) BS01 ADP ? GO:0005524 ... Q6YRW8 N/A
    133264 3cws:A (2.3) BS01 dna 3.2.2.21 GO:0003824 ... P04395 18682218
    133265 3cws:A (2.3) BS02 dna 3.2.2.21 GO:0003824 ... P04395 18682218
    133266 3cws:B (2.3) BS01 dna 3.2.2.21 GO:0003824 ... P04395 18682218
    133267 3cws:B (2.3) BS02 dna 3.2.2.21 GO:0003824 ... P04395 18682218
    133268 3cws:C (2.3) BS01 dna 3.2.2.21 GO:0003824 ... P04395 18682218
    133269 3cws:C (2.3) BS02 dna 3.2.2.21 GO:0003824 ... P04395 18682218
    133270 3cws:D (2.3) BS01 dna 3.2.2.21 GO:0003824 ... P04395 18682218
    133271 3cws:D (2.3) BS02 dna 3.2.2.21 GO:0003824 ... P04395 18682218
    133272 3cwt:A (2.3) BS01 dna 3.2.2.21 GO:0003824 ... P04395 18682218
    133273 3cwt:A (2.3) BS02 dna 3.2.2.21 GO:0003824 ... P04395 18682218
    133274 3cwt:B (2.3) BS01 dna 3.2.2.21 GO:0003824 ... P04395 18682218
    133275 3cwt:B (2.3) BS02 dna 3.2.2.21 GO:0003824 ... P04395 18682218
    133276 3cwt:C (2.3) BS01 dna 3.2.2.21 GO:0003824 ... P04395 18682218
    133277 3cwt:C (2.3) BS02 dna 3.2.2.21 GO:0003824 ... P04395 18682218
    133278 3cwt:D (2.3) BS01 dna 3.2.2.21 GO:0003824 ... P04395 18682218
    133279 3cwt:D (2.3) BS02 dna 3.2.2.21 GO:0003824 ... P04395 18682218
    133280 3cwu:A (2.8) BS01 dna 3.2.2.21 GO:0003824 ... P04395 18682218
    133281 3cwu:A (2.8) BS02 dna 3.2.2.21 GO:0003824 ... P04395 18682218
    133282 3cwu:B (2.8) BS01 dna 3.2.2.21 GO:0003824 ... P04395 18682218
    133283 3cwu:B (2.8) BS02 dna 3.2.2.21 GO:0003824 ... P04395 18682218
    133284 3cwu:C (2.8) BS01 dna 3.2.2.21 GO:0003824 ... P04395 18682218
    133285 3cwu:C (2.8) BS02 dna 3.2.2.21 GO:0003824 ... P04395 18682218
    133286 3cwu:D (2.8) BS01 dna 3.2.2.21 GO:0003824 ... P04395 18682218
    133287 3cwu:D (2.8) BS02 dna 3.2.2.21 GO:0003824 ... P04395 18682218
    133288 3cww:A (1.96) BS01 peptide 3.4.24.56 GO:0001540 ... P14735 18986166
    133289 3cww:A (1.96) BS02 ZN 3.4.24.56 GO:0001540 ... P14735 18986166
    133290 3cww:B (1.96) BS01 peptide 3.4.24.56 GO:0001540 ... P14735 18986166
    133291 3cww:B (1.96) BS02 ZN 3.4.24.56 GO:0001540 ... P14735 18986166
    133292 3cwz:A (3.2) BS01 MG ? GO:0000139 ... P20340 19141279
    133293 3cwz:A (3.2) BS02 GTP ? GO:0000139 ... P20340 19141279
    133294 3cx3:A (2.4) BS01 ZN ? GO:0006829 ... Q8DQ09 18632116
    133295 3cx3:B (2.4) BS01 ZN ? GO:0006829 ... Q8DQ09 18632116
    133296 3cx4:A (2.29) BS01 GLC 2.4.1.21 GO:0004373 ... P0A6U8 19761218
    133297 3cx4:A (2.29) BS02 GLC 2.4.1.21 GO:0004373 ... P0A6U8 19761218
    133298 3cx4:A (2.29) BS03 GLC 2.4.1.21 GO:0004373 ... P0A6U8 19761218
    133299 3cx4:A (2.29) BS04 GLC 2.4.1.21 GO:0004373 ... P0A6U8 19761218
    133300 3cx4:A (2.29) BS05 GLC 2.4.1.21 GO:0004373 ... P0A6U8 19761218
    133301 3cx4:A (2.29) BS06 GLC 2.4.1.21 GO:0004373 ... P0A6U8 19761218
    133302 3cx4:A (2.29) BS07 GLC 2.4.1.21 GO:0004373 ... P0A6U8 19761218
    133303 3cx4:A (2.29) BS08 GLC 2.4.1.21 GO:0004373 ... P0A6U8 19761218
    133304 3cx4:A (2.29) BS09 GLC 2.4.1.21 GO:0004373 ... P0A6U8 19761218
    133305 3cx4:A (2.29) BS10 ADP 2.4.1.21 GO:0004373 ... P0A6U8 19761218
    133306 3cx4:A (2.29) BS11 250 2.4.1.21 GO:0004373 ... P0A6U8 19761218
    133307 3cx5:C (1.9) BS01 HEM 7.1.1.8 GO:0005739 ... P00163 18390544
    133308 3cx5:C (1.9) BS02 HEM 7.1.1.8 GO:0005739 ... P00163 18390544
    133309 3cx5:C (1.9) BS03 SMA 7.1.1.8 GO:0005739 ... P00163 18390544
    133310 3cx5:C (1.9) BS04 CN5 7.1.1.8 GO:0005739 ... P00163 18390544
    133311 3cx5:D (1.9) BS01 HEM 7.1.1.8 GO:0009055 ... P07143 18390544
    133312 3cx5:E (1.9) BS01 FES 7.1.1.8 GO:0008121 ... P08067 18390544
    133313 3cx5:E (1.9) BS02 SMA 7.1.1.8 GO:0008121 ... P08067 18390544
    133314 3cx5:N (1.9) BS01 CN5 7.1.1.8 GO:0005739 ... P00163 18390544
    133315 3cx5:N (1.9) BS02 HEM 7.1.1.8 GO:0005739 ... P00163 18390544
    133316 3cx5:N (1.9) BS03 HEM 7.1.1.8 GO:0005739 ... P00163 18390544
    133317 3cx5:N (1.9) BS04 SMA 7.1.1.8 GO:0005739 ... P00163 18390544
    133318 3cx5:O (1.9) BS01 GLC 7.1.1.8 GO:0009055 ... P07143 18390544
    133319 3cx5:O (1.9) BS02 FRU 7.1.1.8 GO:0009055 ... P07143 18390544
    133320 3cx5:O (1.9) BS03 HEM 7.1.1.8 GO:0009055 ... P07143 18390544
    133321 3cx5:P (1.9) BS01 SMA 7.1.1.8 GO:0008121 ... P08067 18390544
    133322 3cx5:P (1.9) BS02 FES 7.1.1.8 GO:0008121 ... P08067 18390544
    133323 3cx5:W (1.9) BS01 HEM ? GO:0005515 ... P00044 18390544
    133324 3cx6:A (2.5) BS01 MG ? GO:0001664 ... P27601 18940608
    133325 3cx6:A (2.5) BS02 GDP ? GO:0001664 ... P27601 18940608
    133326 3cx7:A (2.25) BS01 MG ? GO:0001664 ... P27601 18940608
    133327 3cx7:A (2.25) BS02 ALF ? GO:0001664 ... P27601 18940608
    133328 3cx7:A (2.25) BS03 GDP ? GO:0001664 ... P27601 18940608
    133329 3cx8:A (2.0) BS01 MG ? GO:0001664 ... P27601 18940608
    133330 3cx8:A (2.0) BS02 GSP ? GO:0001664 ... P27601 18940608
    133331 3cx9:A (2.8) BS01 LPX ? GO:0003677 ... P02768 19601929
    133332 3cxa:A (3.4) BS01 GLC ? GO:0001818 ... Q9GK12 N/A
    133333 3cxa:B (3.4) BS01 GLC ? GO:0001818 ... Q9GK12 N/A
    133334 3cxc:1 (3.0) BS01 rna ? GO:0003735 ... P22452 18947996
    133335 3cxc:2 (3.0) BS01 rna ? GO:0003735 ... P32411 18947996
    133336 3cxc:2 (3.0) BS02 MG ? GO:0003735 ... P32411 18947996
    133337 3cxc:A (3.0) BS01 rna ? GO:0002181 ... P20276 18947996
    133338 3cxc:B (3.0) BS01 rna ? GO:0003723 ... P20279 18947996
    133339 3cxc:C (3.0) BS01 rna ? GO:0003735 ... P12735 18947996
    133340 3cxc:D (3.0) BS01 rna ? GO:0000049 ... P14124 18947996
    133341 3cxc:D (3.0) BS02 rna ? GO:0000049 ... P14124 18947996
    133342 3cxc:E (3.0) BS01 rna ? GO:0002181 ... P14135 18947996
    133343 3cxc:F (3.0) BS01 rna ? GO:0001682 ... P12743 18947996
    133344 3cxc:H (3.0) BS01 rna N/A GO:0003735 ... N/A 18947996
    133345 3cxc:I (3.0) BS01 rna ? GO:0003729 ... P29198 18947996
    133346 3cxc:J (3.0) BS01 rna ? GO:0003735 ... P22450 18947996
    133347 3cxc:K (3.0) BS01 rna ? GO:0003735 ... P12737 18947996
    133348 3cxc:L (3.0) BS01 rna N/A GO:0003735 ... N/A 18947996
    133349 3cxc:M (3.0) BS01 rna ? GO:0000027 ... P14123 18947996
    133350 3cxc:M (3.0) BS02 rna ? GO:0000027 ... P14123 18947996
    133351 3cxc:N (3.0) BS01 rna ? GO:0003723 ... P12733 18947996
    133352 3cxc:O (3.0) BS01 rna ? GO:0003723 ... P14119 18947996
    133353 3cxc:P (3.0) BS01 rna ? GO:0003735 ... P12734 18947996
    133354 3cxc:P (3.0) BS02 rna ? GO:0003735 ... P12734 18947996
    133355 3cxc:Q (3.0) BS01 rna ? GO:0002181 ... P10970 18947996
    133356 3cxc:R (3.0) BS01 rna ? GO:0003735 ... P12732 18947996
    133357 3cxc:S (3.0) BS01 rna ? GO:0003723 ... P10972 18947996
    133358 3cxc:S (3.0) BS02 MG ? GO:0003723 ... P10972 18947996
    133359 3cxc:T (3.0) BS01 rna ? GO:0003735 ... P14116 18947996
    133360 3cxc:U (3.0) BS01 rna ? GO:0003735 ... P10971 18947996
    133361 3cxc:V (3.0) BS01 rna ? GO:0000463 ... P14121 18947996
    133362 3cxc:V (3.0) BS02 rna ? GO:0000463 ... P14121 18947996
    133363 3cxc:W (3.0) BS01 rna ? GO:0002181 ... P18138 18947996
    133364 3cxc:X (3.0) BS01 rna ? GO:0000166 ... P12736 18947996
    133365 3cxc:X (3.0) BS02 MG ? GO:0000166 ... P12736 18947996
    133366 3cxc:Y (3.0) BS01 rna N/A GO:0003735 ... N/A 18947996
    133367 3cxc:Z (3.0) BS01 rna ? GO:0003723 ... P32410 18947996
    133368 3cxd:H (2.8) BS01 peptide N/A N/A N/A 18694758
    133369 3cxd:L (2.8) BS01 peptide N/A N/A N/A 18694758
    133370 3cxh:C (2.5) BS01 HEM 7.1.1.8 GO:0005739 ... P00163 18390544
    133371 3cxh:C (2.5) BS02 HEM 7.1.1.8 GO:0005739 ... P00163 18390544
    133372 3cxh:C (2.5) BS03 SMA 7.1.1.8 GO:0005739 ... P00163 18390544
    133373 3cxh:D (2.5) BS01 HEM 7.1.1.8 GO:0009055 ... P07143 18390544
    133374 3cxh:E (2.5) BS01 FES 7.1.1.8 GO:0008121 ... P08067 18390544
    133375 3cxh:E (2.5) BS02 SMA 7.1.1.8 GO:0008121 ... P08067 18390544
    133376 3cxh:N (2.5) BS01 HEM 7.1.1.8 GO:0005739 ... P00163 18390544
    133377 3cxh:N (2.5) BS02 HEM 7.1.1.8 GO:0005739 ... P00163 18390544
    133378 3cxh:N (2.5) BS03 SMA 7.1.1.8 GO:0005739 ... P00163 18390544
    133379 3cxh:O (2.5) BS01 GLC 7.1.1.8 GO:0009055 ... P07143 18390544
    133380 3cxh:O (2.5) BS02 FRU 7.1.1.8 GO:0009055 ... P07143 18390544
    133381 3cxh:O (2.5) BS03 HEM 7.1.1.8 GO:0009055 ... P07143 18390544
    133382 3cxh:P (2.5) BS01 SMA 7.1.1.8 GO:0008121 ... P08067 18390544
    133383 3cxh:P (2.5) BS02 FES 7.1.1.8 GO:0008121 ... P08067 18390544
    133384 3cxh:W (2.5) BS01 HEM ? GO:0005739 ... P00045 18390544
    133385 3cxi:A (1.83) BS01 VIT ? GO:0004623 ... Q90249 19401234
    133386 3cxi:B (1.83) BS01 VIT ? GO:0004623 ... Q90249 19401234
    133387 3cxk:A (1.7) BS01 ZN 1.8.4.12 GO:0005737 ... Q3JRF0 19020349
    133388 3cxk:B (1.7) BS01 ZN 1.8.4.12 GO:0005737 ... Q3JRF0 19020349
    133389 3cxl:A (2.6) BS01 ZN ? GO:0005096 ... P15882 N/A
    133390 3cxl:A (2.6) BS02 ZN ? GO:0005096 ... P15882 N/A
    133391 3cxm:A (1.5) BS01 URB 3.2.2.27 GO:0004844 ... D0VWU0 N/A
    133392 3cxm:A (1.5) BS02 URA 3.2.2.27 GO:0004844 ... D0VWU0 N/A
    133393 3cxo:A (2.0) BS01 3LR 4.2.1.90 GO:0000287 ... Q8ZNF9 18754693
    133394 3cxo:A (2.0) BS02 MG 4.2.1.90 GO:0000287 ... Q8ZNF9 18754693
    133395 3cxo:B (2.0) BS01 MG 4.2.1.90 GO:0000287 ... Q8ZNF9 18754693
    133396 3cxo:B (2.0) BS02 1N5 4.2.1.90 GO:0000287 ... Q8ZNF9 18754693
    133397 3cxq:A (2.3) BS01 GLP 2.3.1.4 GO:0000139 ... Q96EK6 18675810
    133398 3cxv:A (1.7) BS01 HEM 1.14.19.70 GO:0004497 ... P9WPP7 18818197
    133399 3cxw:A (2.1) BS01 peptide 2.7.11.1 GO:0004672 ... P11309 22136433
    133400 3cxw:A (2.1) BS02 7CP 2.7.11.1 GO:0004672 ... P11309 22136433

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).