SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    13201 1f8s:H (2.0) BS02 BE2 1.4.3.2 GO:0001716 ... P81382 10944103
    13202 1f8s:H (2.0) BS03 BE2 1.4.3.2 GO:0001716 ... P81382 10944103
    13203 1f8s:H (2.0) BS04 FAD 1.4.3.2 GO:0001716 ... P81382 10944103
    13204 1f8v:A (3.0) BS01 rna 3.4.23.44 GO:0004190 ... Q9J7Z0 11135676
    13205 1f8v:A (3.0) BS02 peptide 3.4.23.44 GO:0004190 ... Q9J7Z0 11135676
    13206 1f8v:A (3.0) BS03 peptide 3.4.23.44 GO:0004190 ... Q9J7Z0 11135676
    13207 1f8v:A (3.0) BS04 peptide 3.4.23.44 GO:0004190 ... Q9J7Z0 11135676
    13208 1f8v:B (3.0) BS01 peptide 3.4.23.44 GO:0004190 ... Q9J7Z0 11135676
    13209 1f8v:C (3.0) BS01 peptide 3.4.23.44 GO:0004190 ... Q9J7Z0 11135676
    13210 1f8v:C (3.0) BS02 CA 3.4.23.44 GO:0004190 ... Q9J7Z0 11135676
    13211 1f8w:A (2.45) BS01 FAD 1.11.1.1 GO:0016491 ... P37062 10956025
    13212 1f8y:A (2.4) BS01 5MD 2.4.2.6 GO:0043173 ... Q9R5V5 8805514
    13213 1f8y:A (2.4) BS02 5MD 2.4.2.6 GO:0043173 ... Q9R5V5 8805514
    13214 1f8y:B (2.4) BS01 5MD 2.4.2.6 GO:0043173 ... Q9R5V5 8805514
    13215 1f8y:B (2.4) BS02 5MD 2.4.2.6 GO:0043173 ... Q9R5V5 8805514
    13216 1f8z:A (-1.00) BS01 CA ? N/A P01130 10981718
    13217 1f90:H (2.6) BS01 peptide N/A N/A N/A 11468348
    13218 1f90:L (2.6) BS01 peptide N/A N/A N/A 11468348
    13219 1f92:A (2.6) BS01 UKP 3.4.21.73 GO:0004252 ... P00749 10926521 BindingDB: Ki=640nM
    13220 1f93:A (2.6) BS01 peptide 4.2.1.96 GO:0003713 ... P61459 10966642
    13221 1f93:B (2.6) BS01 peptide 4.2.1.96 GO:0003713 ... P61459 10966642
    13222 1f93:C (2.6) BS01 peptide 4.2.1.96 GO:0003713 ... P61459 10966642
    13223 1f93:C (2.6) BS02 peptide 4.2.1.96 GO:0003713 ... P61459 10966642
    13224 1f93:D (2.6) BS01 peptide 4.2.1.96 GO:0003713 ... P61459 10966642
    13225 1f93:E (2.6) BS01 peptide ? N/A P22361 10966642
    13226 1f95:A (-1.00) BS01 peptide ? GO:0000776 ... P63170 11178896
    13227 1f95:A (-1.00) BS02 peptide ? GO:0000776 ... P63170 11178896
    13228 1f95:B (-1.00) BS01 peptide ? GO:0000776 ... P63170 11178896
    13229 1f96:A (-1.00) BS01 peptide ? GO:0000776 ... P63170 11178896
    13230 1f96:A (-1.00) BS02 peptide ? GO:0000776 ... P63170 11178896
    13231 1f96:B (-1.00) BS01 peptide ? GO:0000776 ... P63170 11178896
    13232 1f96:B (-1.00) BS02 peptide ? GO:0000776 ... P63170 11178896
    13233 1f99:A (2.4) BS01 BLA ? GO:0009535 ... P59858 11463658
    13234 1f99:A (2.4) BS02 PEB ? GO:0009535 ... P59858 11463658
    13235 1f99:B (2.4) BS01 PEB ? GO:0009535 ... P59859 11463658
    13236 1f99:K (2.4) BS01 PEB ? GO:0009535 ... P59858 11463658
    13237 1f99:L (2.4) BS01 BLA ? GO:0009535 ... P59859 11463658
    13238 1f99:L (2.4) BS02 PEB ? GO:0009535 ... P59859 11463658
    13239 1f99:M (2.4) BS01 PEB ? GO:0009535 ... P59858 11463658
    13240 1f99:N (2.4) BS01 PEB ? GO:0009535 ... P59859 11463658
    13241 1f9a:A (2.0) BS01 ATP 2.7.7.1 GO:0000309 ... Q57961 10986466
    13242 1f9a:B (2.0) BS01 ATP 2.7.7.1 GO:0000309 ... Q57961 10986466
    13243 1f9a:C (2.0) BS01 ATP 2.7.7.1 GO:0000309 ... Q57961 10986466
    13244 1f9a:D (2.0) BS01 ATP 2.7.7.1 GO:0000309 ... Q57961 10986466
    13245 1f9a:E (2.0) BS01 ATP 2.7.7.1 GO:0000309 ... Q57961 10986466
    13246 1f9a:F (2.0) BS01 ATP 2.7.7.1 GO:0000309 ... Q57961 10986466
    13247 1f9b:A (2.7) BS01 FE 3.4.21.- GO:0005576 ... O77811 11599026
    13248 1f9b:A (2.7) BS02 FE 3.4.21.- GO:0005576 ... O77811 11599026
    13249 1f9b:A (2.7) BS03 BCT 3.4.21.- GO:0005576 ... O77811 11599026
    13250 1f9b:A (2.7) BS04 BCT 3.4.21.- GO:0005576 ... O77811 11599026
    13251 1f9b:A (2.7) BS05 3ID 3.4.21.- GO:0005576 ... O77811 11599026
    13252 1f9b:A (2.7) BS06 3ID 3.4.21.- GO:0005576 ... O77811 11599026
    13253 1f9c:A (2.5) BS01 MN 5.5.1.1 GO:0003824 ... Q51958 11080642
    13254 1f9c:B (2.5) BS01 MN 5.5.1.1 GO:0003824 ... Q51958 11080642
    13255 1f9d:A (2.3) BS01 GLC 3.2.1.4 GO:0004553 ... P37698 10985769
    13256 1f9d:A (2.3) BS02 GLC 3.2.1.4 GO:0004553 ... P37698 10985769
    13257 1f9d:A (2.3) BS03 GLC 3.2.1.4 GO:0004553 ... P37698 10985769
    13258 1f9d:A (2.3) BS04 GLC 3.2.1.4 GO:0004553 ... P37698 10985769
    13259 1f9d:A (2.3) BS05 GLC 3.2.1.4 GO:0004553 ... P37698 10985769
    13260 1f9d:A (2.3) BS06 GLC 3.2.1.4 GO:0004553 ... P37698 10985769
    13261 1f9d:A (2.3) BS07 GLC 3.2.1.4 GO:0004553 ... P37698 10985769
    13262 1f9d:A (2.3) BS08 GLC 3.2.1.4 GO:0004553 ... P37698 10985769
    13263 1f9d:A (2.3) BS09 GLC 3.2.1.4 GO:0004553 ... P37698 10985769
    13264 1f9d:A (2.3) BS10 CA 3.2.1.4 GO:0004553 ... P37698 10985769
    13265 1f9e:A (2.9) BS01 peptide 3.4.22.61 GO:0004197 ... Q14790 10964557
    13266 1f9e:B (2.9) BS01 peptide 3.4.22.61 GO:0004197 ... Q14790 10964557
    13267 1f9e:C (2.9) BS01 peptide 3.4.22.61 GO:0004197 ... Q14790 10964557
    13268 1f9e:D (2.9) BS01 peptide 3.4.22.61 GO:0004197 ... Q14790 10964557
    13269 1f9e:E (2.9) BS01 peptide 3.4.22.61 GO:0004197 ... Q14790 10964557
    13270 1f9e:F (2.9) BS01 peptide 3.4.22.61 GO:0004197 ... Q14790 10964557
    13271 1f9e:G (2.9) BS01 peptide 3.4.22.61 GO:0004197 ... Q14790 10964557
    13272 1f9e:H (2.9) BS01 peptide 3.4.22.61 GO:0004197 ... Q14790 10964557
    13273 1f9e:I (2.9) BS01 peptide 3.4.22.61 GO:0004197 ... Q14790 10964557
    13274 1f9e:J (2.9) BS01 peptide 3.4.22.61 GO:0004197 ... Q14790 10964557
    13275 1f9e:K (2.9) BS01 peptide 3.4.22.61 GO:0004197 ... Q14790 10964557
    13276 1f9e:L (2.9) BS01 peptide 3.4.22.61 GO:0004197 ... Q14790 10964557
    13277 1f9g:A (2.0) BS01 ASC 4.2.2.1 GO:0005576 ... Q54873 11278838 MOAD: Ki=53mM
    13278 1f9h:A (1.5) BS01 MG 2.7.6.3 GO:0000287 ... P26281 12578370
    13279 1f9h:A (1.5) BS02 MG 2.7.6.3 GO:0000287 ... P26281 12578370
    13280 1f9h:A (1.5) BS03 APC 2.7.6.3 GO:0000287 ... P26281 12578370
    13281 1f9h:A (1.5) BS04 PH2 2.7.6.3 GO:0000287 ... P26281 12578370
    13282 1f9k:A (3.0) BS01 AMG ? GO:0030246 ... Q9SM56 11183779
    13283 1f9k:A (3.0) BS02 MN ? GO:0030246 ... Q9SM56 11183779
    13284 1f9k:A (3.0) BS03 CA ? GO:0030246 ... Q9SM56 11183779
    13285 1f9k:B (3.0) BS01 MN ? GO:0030246 ... Q9SM56 11183779
    13286 1f9k:B (3.0) BS02 CA ? GO:0030246 ... Q9SM56 11183779
    13287 1f9o:A (2.5) BS01 V3P 3.2.1.4 GO:0004553 ... P37698 10985769
    13288 1f9o:A (2.5) BS02 BGC 3.2.1.4 GO:0004553 ... P37698 10985769
    13289 1f9o:A (2.5) BS03 BGC 3.2.1.4 GO:0004553 ... P37698 10985769
    13290 1f9o:A (2.5) BS04 BGC 3.2.1.4 GO:0004553 ... P37698 10985769
    13291 1f9o:A (2.5) BS05 BGC 3.2.1.4 GO:0004553 ... P37698 10985769
    13292 1f9o:A (2.5) BS06 CA 3.2.1.4 GO:0004553 ... P37698 10985769
    13293 1f9t:A (1.5) BS01 ADP 5.6.1.4 GO:0003777 ... P17119 11387196
    13294 1f9u:A (1.7) BS01 ADP 5.6.1.4 GO:0003777 ... P17119 11387196
    13295 1f9v:A (1.3) BS01 ADP 5.6.1.4 GO:0003777 ... P17119 11387196
    13296 1f9v:A (1.3) BS02 ADP 5.6.1.4 GO:0003777 ... P17119 11387196
    13297 1f9w:A (2.5) BS01 ADP 5.6.1.4 GO:0003777 ... P17119 11387196
    13298 1f9w:B (2.5) BS01 ADP 5.6.1.4 GO:0003777 ... P17119 11387196
    13299 1f9x:A (-1.00) BS01 ZN 2.3.2.27 N/A P98170 10934209
    13300 1fa0:A (2.6) BS01 MN 2.7.7.19 GO:0000287 ... P29468 10958780
    13301 1fa0:A (2.6) BS02 MN 2.7.7.19 GO:0000287 ... P29468 10958780
    13302 1fa0:A (2.6) BS03 3AT 2.7.7.19 GO:0000287 ... P29468 10958780
    13303 1fa0:A (2.6) BS04 3AD 2.7.7.19 GO:0000287 ... P29468 10958780
    13304 1fa0:A (2.6) BS05 POP 2.7.7.19 GO:0000287 ... P29468 10958780
    13305 1fa0:B (2.6) BS01 MN 2.7.7.19 GO:0000287 ... P29468 10958780
    13306 1fa0:B (2.6) BS02 MN 2.7.7.19 GO:0000287 ... P29468 10958780
    13307 1fa0:B (2.6) BS03 3AT 2.7.7.19 GO:0000287 ... P29468 10958780
    13308 1fa0:B (2.6) BS04 3AD 2.7.7.19 GO:0000287 ... P29468 10958780
    13309 1fa2:A (2.3) BS01 RR7 3.2.1.2 GO:0000272 ... P10537 7777485
    13310 1fa2:A (2.3) BS02 GLC 3.2.1.2 GO:0000272 ... P10537 7777485
    13311 1fa4:A (-1.00) BS01 CU ? GO:0005507 ... Q3M9H8 N/A
    13312 1fa5:A (1.8) BS01 ZN 4.4.1.5 GO:0004462 ... P0AC81 10913283
    13313 1fa5:A (1.8) BS02 ZN 4.4.1.5 GO:0004462 ... P0AC81 10913283
    13314 1fa5:B (1.8) BS01 ZN 4.4.1.5 GO:0004462 ... P0AC81 10913283
    13315 1fa5:B (1.8) BS02 ZN 4.4.1.5 GO:0004462 ... P0AC81 10913283
    13316 1fa6:A (1.9) BS01 CO 4.4.1.5 GO:0004462 ... P0AC81 10913283
    13317 1fa6:A (1.9) BS02 CO 4.4.1.5 GO:0004462 ... P0AC81 10913283
    13318 1fa6:B (1.9) BS01 CO 4.4.1.5 GO:0004462 ... P0AC81 10913283
    13319 1fa6:B (1.9) BS02 CO 4.4.1.5 GO:0004462 ... P0AC81 10913283
    13320 1fa9:A (2.4) BS01 GLC 2.4.1.1 GO:0002060 ... P06737 10949035
    13321 1fa9:A (2.4) BS02 AMP 2.4.1.1 GO:0002060 ... P06737 10949035
    13322 1fa9:A (2.4) BS03 PLP 2.4.1.1 GO:0002060 ... P06737 10949035
    13323 1fae:A (2.0) BS01 GLC 3.2.1.4 GO:0004553 ... P37698 10985769
    13324 1fae:A (2.0) BS02 GLC 3.2.1.4 GO:0004553 ... P37698 10985769
    13325 1fae:A (2.0) BS03 CA 3.2.1.4 GO:0004553 ... P37698 10985769
    13326 1fag:A (2.7) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 9033595
    13327 1fag:A (2.7) BS02 PAM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 9033595
    13328 1fag:B (2.7) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 9033595
    13329 1fag:B (2.7) BS02 PAM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 9033595
    13330 1fag:C (2.7) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 9033595
    13331 1fag:C (2.7) BS02 PAM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 9033595
    13332 1fag:D (2.7) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 9033595
    13333 1fag:D (2.7) BS02 PAM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 9033595
    13334 1fah:A (2.3) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 7578081
    13335 1fah:B (2.3) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 7578081
    13336 1fak:H (2.1) BS01 CA 3.4.21.21 GO:0004252 ... P08709 9925787
    13337 1fak:L (2.1) BS01 GLC 3.4.21.21 GO:0005509 ... P08709 9925787
    13338 1fak:L (2.1) BS02 FUC 3.4.21.21 GO:0005509 ... P08709 9925787
    13339 1fak:L (2.1) BS03 CA 3.4.21.21 GO:0005509 ... P08709 9925787
    13340 1fao:A (1.8) BS01 4IP ? N/A Q9UN19 10983984 MOAD: Kd=0.043uM
    13341 1fap:A (2.7) BS01 RAP 5.2.1.8 GO:0003007 ... P62942 8662507 BindingDB: IC50=0.600000nM, EC50=30nM, Ki=0.20nM
    13342 1fap:B (2.7) BS01 RAP 2.7.11.1 GO:0044877 ... P42345 8662507 BindingDB: IC50=>10000nM, Kd=0.600000nM
    13343 1faq:A (-1.00) BS01 ZN 2.7.11.1 N/A P04049 8710867
    13344 1faq:A (-1.00) BS02 ZN 2.7.11.1 N/A P04049 8710867
    13345 1far:A (-1.00) BS01 ZN 2.7.11.1 N/A P04049 8710867
    13346 1fat:A (2.8) BS01 MN ? GO:0030246 ... P05087 8702788
    13347 1fat:A (2.8) BS02 CA ? GO:0030246 ... P05087 8702788
    13348 1fat:B (2.8) BS01 MN ? GO:0030246 ... P05087 8702788
    13349 1fat:B (2.8) BS02 CA ? GO:0030246 ... P05087 8702788
    13350 1fat:C (2.8) BS01 MN ? GO:0030246 ... P05087 8702788
    13351 1fat:C (2.8) BS02 CA ? GO:0030246 ... P05087 8702788
    13352 1fat:D (2.8) BS01 MN ? GO:0030246 ... P05087 8702788
    13353 1fat:D (2.8) BS02 CA ? GO:0030246 ... P05087 8702788
    13354 1fav:A (3.0) BS01 peptide ? GO:0003700 ... P03069
    P03377
    11026535
    13355 1faw:A (3.09) BS01 HEM ? GO:0004601 ... P01989 11717498
    13356 1faw:B (3.09) BS01 HEM ? GO:0004601 ... P02117 11717498
    13357 1faw:B (3.09) BS02 OXY ? GO:0004601 ... P02117 11717498
    13358 1faw:C (3.09) BS01 HEM ? GO:0004601 ... P01989 11717498
    13359 1faw:D (3.09) BS01 HEM ? GO:0004601 ... P02117 11717498
    13360 1faw:D (3.09) BS02 OXY ? GO:0004601 ... P02117 11717498
    13361 1fax:A (3.0) BS01 CA 3.4.21.6 GO:0004252 ... P00742 8939944
    13362 1fax:A (3.0) BS02 DX9 3.4.21.6 GO:0004252 ... P00742 8939944 BindingDB: Ki=41nM, IC50=70nM
    13363 1fay:A (3.3) BS01 AMG ? GO:0030246 ... Q9SM56 11183779
    13364 1fay:A (3.3) BS02 MN ? GO:0030246 ... Q9SM56 11183779
    13365 1fay:A (3.3) BS03 CA ? GO:0030246 ... Q9SM56 11183779
    13366 1fay:B (3.3) BS01 AMG ? GO:0030246 ... Q9SM56 11183779
    13367 1fay:B (3.3) BS02 MN ? GO:0030246 ... Q9SM56 11183779
    13368 1fay:B (3.3) BS03 CA ? GO:0030246 ... Q9SM56 11183779
    13369 1fay:C (3.3) BS01 AMG ? GO:0030246 ... Q9SM56 11183779
    13370 1fay:C (3.3) BS02 MN ? GO:0030246 ... Q9SM56 11183779
    13371 1fay:C (3.3) BS03 CA ? GO:0030246 ... Q9SM56 11183779
    13372 1fay:D (3.3) BS01 AMG ? GO:0030246 ... Q9SM56 11183779
    13373 1fay:D (3.3) BS02 MN ? GO:0030246 ... Q9SM56 11183779
    13374 1fay:D (3.3) BS03 CA ? GO:0030246 ... Q9SM56 11183779
    13375 1fay:E (3.3) BS01 AMG ? GO:0030246 ... Q9SM56 11183779
    13376 1fay:E (3.3) BS02 MN ? GO:0030246 ... Q9SM56 11183779
    13377 1fay:E (3.3) BS03 CA ? GO:0030246 ... Q9SM56 11183779
    13378 1fay:F (3.3) BS01 AMG ? GO:0030246 ... Q9SM56 11183779
    13379 1fay:F (3.3) BS02 MN ? GO:0030246 ... Q9SM56 11183779
    13380 1fay:F (3.3) BS03 CA ? GO:0030246 ... Q9SM56 11183779
    13381 1fay:G (3.3) BS01 AMG ? GO:0030246 ... Q9SM56 11183779
    13382 1fay:G (3.3) BS02 MN ? GO:0030246 ... Q9SM56 11183779
    13383 1fay:G (3.3) BS03 CA ? GO:0030246 ... Q9SM56 11183779
    13384 1fay:H (3.3) BS01 AMG ? GO:0030246 ... Q9SM56 11183779
    13385 1fay:H (3.3) BS02 MN ? GO:0030246 ... Q9SM56 11183779
    13386 1fay:H (3.3) BS03 CA ? GO:0030246 ... Q9SM56 11183779
    13387 1fb1:A (3.1) BS01 ZN 3.5.4.16 GO:0003934 ... P30793 11087827
    13388 1fb1:B (3.1) BS01 ZN 3.5.4.16 GO:0003934 ... P30793 11087827
    13389 1fb1:C (3.1) BS01 ZN 3.5.4.16 GO:0003934 ... P30793 11087827
    13390 1fb1:D (3.1) BS01 ZN 3.5.4.16 GO:0003934 ... P30793 11087827
    13391 1fb1:E (3.1) BS01 ZN 3.5.4.16 GO:0003934 ... P30793 11087827
    13392 1fb5:A (3.5) BS01 NVA 2.1.3.3 GO:0000050 ... P84010 14527149
    13393 1fb7:A (2.6) BS01 ROC 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P04585 11106162
    13394 1fbb:A (3.2) BS01 RET ? GO:0005216 ... P02945 10949309
    13395 1fbc:A (2.6) BS01 MG 3.1.3.11 GO:0000122 ... P00636 8382525
    13396 1fbc:A (2.6) BS02 AHG 3.1.3.11 GO:0000122 ... P00636 8382525
    13397 1fbc:B (2.6) BS01 MG 3.1.3.11 GO:0000122 ... P00636 8382525
    13398 1fbc:B (2.6) BS02 AHG 3.1.3.11 GO:0000122 ... P00636 8382525
    13399 1fbd:A (2.9) BS01 MN 3.1.3.11 GO:0000122 ... P00636 8382525
    13400 1fbd:A (2.9) BS02 MN 3.1.3.11 GO:0000122 ... P00636 8382525

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).