SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    134201 3d9l:B (2.2) BS02 peptide ? N/A Q9UPN6 18550522
    134202 3d9m:A (1.75) BS01 peptide ? N/A Q9UPN6 18550522
    134203 3d9m:B (1.75) BS01 peptide ? N/A Q9UPN6 18550522
    134204 3d9n:A (1.6) BS01 peptide ? N/A Q9UPN6 18550522
    134205 3d9n:B (1.6) BS01 peptide ? N/A Q9UPN6 18550522
    134206 3d9n:B (1.6) BS02 peptide ? N/A Q9UPN6 18550522
    134207 3d9o:B (2.0) BS01 peptide ? N/A Q9UPN6 18550522
    134208 3d9p:A (2.1) BS01 peptide ? N/A Q9UPN6 18550522
    134209 3d9p:B (2.1) BS01 peptide ? N/A Q9UPN6 18550522
    134210 3d9q:X (1.43) BS01 CA 3.4.21.64 GO:0004252 ... P06873 19686853
    134211 3d9s:C (2.0) BS01 PS6 ? GO:0005515 ... P55064 18768791
    134212 3d9s:D (2.0) BS01 PS6 ? GO:0005515 ... P55064 18768791
    134213 3d9t:A (1.5) BS01 peptide 2.3.2.27 N/A Q13490 19153467
    134214 3d9t:A (1.5) BS02 ZN 2.3.2.27 N/A Q13490 19153467
    134215 3d9t:B (1.5) BS01 peptide 2.3.2.27 N/A Q13490 19153467
    134216 3d9t:B (1.5) BS02 ZN 2.3.2.27 N/A Q13490 19153467
    134217 3d9u:A (2.3) BS01 peptide 2.3.2.27 N/A Q13490 19153467
    134218 3d9u:A (2.3) BS02 ZN 2.3.2.27 N/A Q13490 19153467
    134219 3d9v:A (3.3) BS01 H52 2.7.11.1 GO:0004672 ... Q13464 16249185 BindingDB: Ki=6nM, IC50=30nM
    134220 3d9v:B (3.3) BS01 H52 2.7.11.1 GO:0004672 ... Q13464 16249185 BindingDB: Ki=6nM, IC50=30nM
    134221 3d9z:A (1.65) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 19170619
    134222 3d9z:A (1.65) BS02 D9Z 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 19170619 MOAD: Ki=2nM
    BindingDB: Ki=12nM
    134223 3da1:A (2.7) BS01 FAD 1.1.5.3 GO:0004368 ... Q9KDW6 N/A
    134224 3da2:A (2.05) BS01 ZN 4.2.1.1 GO:0004089 ... Q8N1Q1 N/A
    134225 3da2:A (2.05) BS02 4MD 4.2.1.1 GO:0004089 ... Q8N1Q1 N/A
    134226 3da2:B (2.05) BS01 ZN 4.2.1.1 GO:0004089 ... Q8N1Q1 N/A
    134227 3da2:B (2.05) BS02 4MD 4.2.1.1 GO:0004089 ... Q8N1Q1 N/A
    134228 3da3:A (2.5) BS01 MG ? GO:0042742 ... P05820 18640984
    134229 3da3:B (2.5) BS01 MG ? GO:0042742 ... P05820 18640984
    134230 3da3:B (2.5) BS02 MG ? GO:0042742 ... P05820 18640984
    134231 3da6:A (2.0) BS01 BZ9 2.7.11.24 GO:0004672 ... P53779 19062275
    134232 3da8:A (1.3) BS01 MG 2.1.2.2 GO:0000287 ... P9WHM5 19394344
    134233 3da8:A (1.3) BS02 IOD 2.1.2.2 GO:0000287 ... P9WHM5 19394344
    134234 3da8:B (1.3) BS01 IOD 2.1.2.2 GO:0000287 ... P9WHM5 19394344
    134235 3da9:B (1.8) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 19371038
    134236 3da9:B (1.8) BS02 peptide 3.4.21.5 GO:0004252 ... P00734 19371038
    134237 3da9:B (1.8) BS03 44U 3.4.21.5 GO:0004252 ... P00734 19371038 MOAD: Kd=3.1uM
    BindingDB: Kd=3100nM, IC50=18000nM
    134238 3daa:A (1.9) BS01 PDD 2.6.1.21 GO:0003824 ... P19938 9538014
    134239 3daa:B (1.9) BS01 PDD 2.6.1.21 GO:0003824 ... P19938 9538014
    134240 3dab:A (1.9) BS01 peptide ? GO:0005634 ... O15151 18677113
    134241 3dab:C (1.9) BS01 peptide ? GO:0005634 ... O15151 18677113
    134242 3dab:E (1.9) BS01 peptide ? GO:0005634 ... O15151 18677113
    134243 3dab:G (1.9) BS01 peptide ? GO:0005634 ... O15151 18677113
    134244 3dac:A (1.8) BS01 peptide ? GO:0005634 ... Q7ZUW7 18677113
    134245 3dac:A (1.8) BS02 peptide ? GO:0005634 ... Q7ZUW7 18677113
    134246 3dac:M (1.8) BS01 peptide ? GO:0005634 ... Q7ZUW7 18677113
    134247 3daf:A (1.75) BS01 CMO 1.12.98.2 GO:0004735 ... Q58194 18653896
    134248 3daf:A (1.75) BS02 CMO 1.12.98.2 GO:0004735 ... Q58194 18653896
    134249 3daf:A (1.75) BS03 FEG 1.12.98.2 GO:0004735 ... Q58194 18653896
    134250 3dag:A (1.75) BS01 FEG 1.12.98.2 GO:0004735 ... Q58194 18653896
    134251 3dag:A (1.75) BS02 CMO 1.12.98.2 GO:0004735 ... Q58194 18653896
    134252 3dag:A (1.75) BS03 CMO 1.12.98.2 GO:0004735 ... Q58194 18653896
    134253 3dah:A (2.3) BS01 AMP 2.7.6.1 GO:0000287 ... Q63XL8 23382856
    134254 3dah:B (2.3) BS01 AMP 2.7.6.1 GO:0000287 ... Q63XL8 23382856
    134255 3dah:B (2.3) BS02 AMP 2.7.6.1 GO:0000287 ... Q63XL8 23382856
    134256 3dah:C (2.3) BS01 AMP 2.7.6.1 GO:0000287 ... Q63XL8 23382856
    134257 3dah:C (2.3) BS02 AMP 2.7.6.1 GO:0000287 ... Q63XL8 23382856
    134258 3daj:A (2.0) BS01 FXG 2.7.11.1 GO:0004672 ... P97477 18579375 MOAD: ic50=2.9uM
    134259 3dak:A (2.25) BS01 ANP 2.7.11.1 GO:0004672 ... O95747 19177573
    134260 3dak:B (2.25) BS01 ANP 2.7.11.1 GO:0004672 ... O95747 19177573
    134261 3dak:C (2.25) BS01 ANP 2.7.11.1 GO:0004672 ... O95747 19177573
    134262 3dak:D (2.25) BS01 ANP 2.7.11.1 GO:0004672 ... O95747 19177573
    134263 3dam:A (2.4) BS01 HEM 4.2.1.92 GO:0004497 ... Q40778 18787124
    134264 3dan:A (1.8) BS01 HEM 4.2.1.92 GO:0004497 ... Q40778 18787124
    134265 3dap:A (2.2) BS01 NDP 1.4.1.16 GO:0009089 ... P04964 9521647
    134266 3dap:B (2.2) BS01 NDP 1.4.1.16 GO:0009089 ... P04964 9521647
    134267 3dap:B (2.2) BS02 DA3 1.4.1.16 GO:0009089 ... P04964 9521647
    134268 3das:A (1.6) BS01 ARA ? N/A Q9Z571 N/A
    134269 3das:A (1.6) BS02 ARA ? N/A Q9Z571 N/A
    134270 3das:A (1.6) BS03 CA ? N/A Q9Z571 N/A
    134271 3das:A (1.6) BS04 CA ? N/A Q9Z571 N/A
    134272 3das:A (1.6) BS05 PQQ ? N/A Q9Z571 N/A
    134273 3dat:A (2.3) BS01 MTX 1.5.1.3 GO:0004146 ... Q81R22 19374017 BindingDB: IC50=15nM
    134274 3dat:A (2.3) BS02 NDP 1.5.1.3 GO:0004146 ... Q81R22 19374017
    134275 3dau:A (1.5) BS01 MTX 1.5.1.3 GO:0004146 ... P0ABQ4 19374017 BindingDB: IC50=8.8nM, EC50=1nM
    134276 3dau:A (1.5) BS02 NDP 1.5.1.3 GO:0004146 ... P0ABQ4 19374017
    134277 3daw:A (2.55) BS01 ATP 3.6.4.- GO:0000287 ... P68135 18625842
    134278 3dax:A (2.15) BS01 HEM 1.14.14.23
    1.14.14.26
    GO:0004497 ... P22680 N/A
    134279 3dax:B (2.15) BS01 HEM 1.14.14.23
    1.14.14.26
    GO:0004497 ... P22680 N/A
    134280 3day:A (1.95) BS01 MG 6.2.1.2
    6.2.1.25
    GO:0004321 ... Q08AH3 19345228
    134281 3day:A (1.95) BS02 APC 6.2.1.2
    6.2.1.25
    GO:0004321 ... Q08AH3 19345228
    134282 3daz:A (1.6) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 19170619
    134283 3daz:A (1.6) BS02 MZM 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 19170619 MOAD: Ki=11.8nM
    BindingDB: Ki=14nM, IC50=21nM, EC50=4e+1nM
    134284 3db1:A (2.77) BS01 PO4 ? N/A Q3V3E1 19196006
    134285 3db1:C (2.77) BS01 PO4 ? N/A Q3V3E1 19196006
    134286 3db1:D (2.77) BS01 PO4 ? N/A Q3V3E1 19196006
    134287 3db3:A (2.4) BS01 peptide 2.3.2.27 N/A Q96T88 21489993
    134288 3db6:A (2.85) BS01 FRS 2.7.11.21 GO:0004672 ... Q4KMI8 18678933
    134289 3db7:A (1.4) BS01 CA ? N/A Q8A994 N/A
    134290 3db7:A (1.4) BS02 CA ? N/A Q8A994 N/A
    134291 3db8:A (3.15) BS01 1FR 2.7.11.21 GO:0004672 ... Q4KMI8 18790636
    134292 3dba:A (2.57) BS01 35G 3.1.4.35 N/A P52731 18614542
    134293 3dba:B (2.57) BS01 35G 3.1.4.35 N/A P52731 18614542
    134294 3dbc:A (3.35) BS01 2FR 2.7.11.21 GO:0004672 ... Q4KMI8 18793847
    134295 3dbd:A (3.05) BS01 3FR 2.7.11.21 GO:0004672 ... Q4KMI8 18793847
    134296 3dbe:A (3.32) BS01 4FR 2.7.11.21 GO:0004672 ... Q4KMI8 18793847
    134297 3dbf:A (3.2) BS01 5FR 2.7.11.21 GO:0004672 ... Q4KMI8 18793847
    134298 3dbg:A (2.6) BS01 HEM 1.14.15.39
    4.2.3.47
    GO:0004497 ... Q9K498 19858213
    134299 3dbg:B (2.6) BS01 HEM 1.14.15.39
    4.2.3.47
    GO:0004497 ... Q9K498 19858213
    134300 3dbh:B (2.85) BS01 ZN 6.2.1.64 GO:0005515 ... Q8TBC4 18652489
    134301 3dbh:D (2.85) BS01 ZN 6.2.1.64 GO:0005515 ... Q8TBC4 18652489
    134302 3dbh:F (2.85) BS01 ZN 6.2.1.64 GO:0005515 ... Q8TBC4 18652489
    134303 3dbh:H (2.85) BS01 ZN 6.2.1.64 GO:0005515 ... Q8TBC4 18652489
    134304 3dbj:A (2.9) BS01 CYC ? GO:0015979 ... P50030 18823993
    134305 3dbj:B (2.9) BS01 CYC ? GO:0015979 ... P50031 18823993
    134306 3dbj:C (2.9) BS01 CYC ? GO:0015979 ... P50030 18823993
    134307 3dbj:D (2.9) BS01 CYC ? GO:0015979 ... P50031 18823993
    134308 3dbj:E (2.9) BS01 CYC ? GO:0015979 ... P50030 18823993
    134309 3dbj:F (2.9) BS01 CYC ? GO:0015979 ... P50031 18823993
    134310 3dbj:G (2.9) BS01 CYC ? GO:0015979 ... P50030 18823993
    134311 3dbj:H (2.9) BS01 CYC ? GO:0015979 ... P50031 18823993
    134312 3dbk:A (1.4) BS01 ZN 3.4.24.26 GO:0004222 ... P14756 N/A
    134313 3dbk:A (1.4) BS02 CA 3.4.24.26 GO:0004222 ... P14756 N/A
    134314 3dbk:A (1.4) BS03 RDF 3.4.24.26 GO:0004222 ... P14756 N/A
    134315 3dbl:B (2.9) BS01 ZN 6.2.1.64 GO:0005515 ... Q8TBC4 18652489
    134316 3dbl:D (2.9) BS01 ZN 6.2.1.64 GO:0005515 ... Q8TBC4 18652489
    134317 3dbl:F (2.9) BS01 ZN 6.2.1.64 GO:0005515 ... Q8TBC4 18652489
    134318 3dbl:H (2.9) BS01 ZN 6.2.1.64 GO:0005515 ... Q8TBC4 18652489
    134319 3dbm:A (2.6) BS01 HEM 4.2.1.92 GO:0004497 ... Q40778 18787124
    134320 3dbm:A (2.6) BS02 HO2 4.2.1.92 GO:0004497 ... Q40778 18787124
    134321 3dbn:A (2.9) BS01 MN 4.2.1.8 GO:0006064 ... A4VVI4 19617363
    134322 3dbn:A (2.9) BS02 CS2 4.2.1.8 GO:0006064 ... A4VVI4 19617363
    134323 3dbn:B (2.9) BS01 MN 4.2.1.8 GO:0006064 ... A4VVI4 19617363
    134324 3dbp:A (1.5) BS01 NUP 2.4.2.10
    4.1.1.23
    GO:0004590 ... P11172 N/A
    134325 3dbp:A (1.5) BS02 NUP 2.4.2.10
    4.1.1.23
    GO:0004590 ... P11172 N/A
    134326 3dbp:B (1.5) BS01 NUP 2.4.2.10
    4.1.1.23
    GO:0004590 ... P11172 N/A
    134327 3dbp:B (1.5) BS02 NUP 2.4.2.10
    4.1.1.23
    GO:0004590 ... P11172 N/A
    134328 3dbr:B (3.05) BS01 ZN 6.2.1.64 GO:0005515 ... Q8TBC4 18652489
    134329 3dbr:D (3.05) BS01 ZN 6.2.1.64 GO:0005515 ... Q8TBC4 18652489
    134330 3dbr:F (3.05) BS01 ZN 6.2.1.64 GO:0005515 ... Q8TBC4 18652489
    134331 3dbr:H (3.05) BS01 ZN 6.2.1.64 GO:0005515 ... Q8TBC4 18652489
    134332 3dbs:A (2.8) BS01 GD9 2.7.11.1
    2.7.1.137
    2.7.1.153
    2.7.1.154
    GO:0016301 ... P48736 18754654 BindingDB: IC50=13nM, Ki=41.8nM, Kd=48nM
    134333 3dbu:A (1.7) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 19170619
    134334 3dbu:A (1.7) BS02 D8W 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 19170619 MOAD: Ki=8.8nM
    134335 3dbv:O (2.45) BS01 NAD 1.2.1.12 GO:0004365 ... P00362 9175858
    134336 3dbv:P (2.45) BS01 NAD 1.2.1.12 GO:0004365 ... P00362 9175858
    134337 3dbv:Q (2.45) BS01 NAD 1.2.1.12 GO:0004365 ... P00362 9175858
    134338 3dbv:R (2.45) BS01 NAD 1.2.1.12 GO:0004365 ... P00362 9175858
    134339 3dbx:A (2.0) BS01 PLM ? N/A Q5GL29 19004781
    134340 3dby:A (2.1) BS01 FE N/A N/A N/A N/A
    134341 3dby:A (2.1) BS02 FE N/A N/A N/A N/A
    134342 3dby:B (2.1) BS01 FE N/A N/A N/A N/A
    134343 3dby:B (2.1) BS02 FE N/A N/A N/A N/A
    134344 3dby:C (2.1) BS01 FE N/A N/A N/A N/A
    134345 3dby:C (2.1) BS02 FE N/A N/A N/A N/A
    134346 3dby:D (2.1) BS01 FE N/A N/A N/A N/A
    134347 3dby:D (2.1) BS02 FE N/A N/A N/A N/A
    134348 3dby:E (2.1) BS01 FE N/A N/A N/A N/A
    134349 3dby:E (2.1) BS02 FE N/A N/A N/A N/A
    134350 3dby:F (2.1) BS01 FE N/A N/A N/A N/A
    134351 3dby:F (2.1) BS02 FE N/A N/A N/A N/A
    134352 3dby:G (2.1) BS01 FE N/A N/A N/A N/A
    134353 3dby:G (2.1) BS02 FE N/A N/A N/A N/A
    134354 3dby:H (2.1) BS01 FE N/A N/A N/A N/A
    134355 3dby:H (2.1) BS02 FE N/A N/A N/A N/A
    134356 3dby:I (2.1) BS01 FE N/A N/A N/A N/A
    134357 3dby:I (2.1) BS02 FE N/A N/A N/A N/A
    134358 3dby:J (2.1) BS01 FE N/A N/A N/A N/A
    134359 3dby:J (2.1) BS02 FE N/A N/A N/A N/A
    134360 3dby:K (2.1) BS01 FE N/A N/A N/A N/A
    134361 3dby:K (2.1) BS02 FE N/A N/A N/A N/A
    134362 3dby:L (2.1) BS01 FE N/A N/A N/A N/A
    134363 3dby:L (2.1) BS02 FE N/A N/A N/A N/A
    134364 3dby:M (2.1) BS01 FE N/A N/A N/A N/A
    134365 3dby:M (2.1) BS02 FE N/A N/A N/A N/A
    134366 3dby:N (2.1) BS01 FE N/A N/A N/A N/A
    134367 3dby:N (2.1) BS02 FE N/A N/A N/A N/A
    134368 3dby:O (2.1) BS01 FE N/A N/A N/A N/A
    134369 3dby:O (2.1) BS02 FE N/A N/A N/A N/A
    134370 3dby:P (2.1) BS01 FE N/A N/A N/A N/A
    134371 3dby:P (2.1) BS02 FE N/A N/A N/A N/A
    134372 3dby:Q (2.1) BS01 FE N/A N/A N/A N/A
    134373 3dby:Q (2.1) BS02 FE N/A N/A N/A N/A
    134374 3dby:R (2.1) BS01 FE N/A N/A N/A N/A
    134375 3dby:R (2.1) BS02 FE N/A N/A N/A N/A
    134376 3dby:S (2.1) BS01 FE N/A N/A N/A N/A
    134377 3dby:S (2.1) BS02 FE N/A N/A N/A N/A
    134378 3dby:T (2.1) BS01 FE N/A N/A N/A N/A
    134379 3dby:T (2.1) BS02 FE N/A N/A N/A N/A
    134380 3dbz:A (1.8) BS01 CA ? N/A P35247 18620419
    134381 3dbz:A (1.8) BS02 CA ? N/A P35247 18620419
    134382 3dbz:A (1.8) BS03 CA ? N/A P35247 18620419
    134383 3dbz:B (1.8) BS01 CA ? N/A P35247 18620419
    134384 3dbz:B (1.8) BS02 CA ? N/A P35247 18620419
    134385 3dbz:B (1.8) BS03 CA ? N/A P35247 18620419
    134386 3dbz:C (1.8) BS01 CA ? N/A P35247 18620419
    134387 3dbz:C (1.8) BS02 CA ? N/A P35247 18620419
    134388 3dbz:C (1.8) BS03 CA ? N/A P35247 18620419
    134389 3dc0:A (2.78) BS01 CA 3.2.1.1 GO:0003824 ... B3GQD0 N/A
    134390 3dc0:A (2.78) BS02 CA 3.2.1.1 GO:0003824 ... B3GQD0 N/A
    134391 3dc0:A (2.78) BS03 CA 3.2.1.1 GO:0003824 ... B3GQD0 N/A
    134392 3dc2:A (2.7) BS01 SER 1.1.1.399
    1.1.1.95
    GO:0004617 ... P9WNX3 18627175
    134393 3dc2:B (2.7) BS01 SER 1.1.1.399
    1.1.1.95
    GO:0004617 ... P9WNX3 18627175
    134394 3dc3:A (1.7) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 19170619
    134395 3dc3:A (1.7) BS02 AZM 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 19170619 MOAD: Ki=4.9nM
    BindingDB: Ki=12nM, Kd=17nM, IC50=10nM
    134396 3dc4:A (1.9) BS01 ADP ? GO:0003777 ... P18105 19135893
    134397 3dc5:A (1.7) BS01 MN 1.15.1.1 GO:0004784 ... P41977 19052361
    134398 3dc5:C (1.7) BS01 MN 1.15.1.1 GO:0004784 ... P41977 19052361
    134399 3dc6:A (1.8) BS01 MN 1.15.1.1 GO:0004784 ... P31161 19052361
    134400 3dc6:C (1.8) BS01 MN 1.15.1.1 GO:0004784 ... P31161 19052361

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).