SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
  • Sort results by
    << < 666 667 668 669 670 671 672 673 674 675 676 677 678 679 680 681 682 683 684 685 686 > >>
    Go to page

    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    135001 3dkh:B (2.4) BS05 OXY 1.10.3.2 GO:0005507 ... Q70KY3 19780817
    135002 3dkj:A (2.0) BS01 PRP 2.4.2.12 GO:0005125 ... P43490 19666527
    135003 3dkj:A (2.0) BS02 UNU 2.4.2.12 GO:0005125 ... P43490 19666527
    135004 3dkj:A (2.0) BS03 PRP 2.4.2.12 GO:0005125 ... P43490 19666527
    135005 3dkj:A (2.0) BS04 UNU 2.4.2.12 GO:0005125 ... P43490 19666527
    135006 3dkj:B (2.0) BS01 PRP 2.4.2.12 GO:0005125 ... P43490 19666527
    135007 3dkj:B (2.0) BS02 PRP 2.4.2.12 GO:0005125 ... P43490 19666527
    135008 3dkj:B (2.0) BS03 UNU 2.4.2.12 GO:0005125 ... P43490 19666527
    135009 3dkk:A (2.31) BS01 FUL 3.1.1.8 GO:0001540 ... P06276 18975951
    135010 3dkk:A (2.31) BS02 FUL 3.1.1.8 GO:0001540 ... P06276 18975951
    135011 3dkl:A (1.89) BS01 UNU 2.4.2.12 GO:0005125 ... P43490 19666527
    135012 3dkl:A (1.89) BS02 PRP 2.4.2.12 GO:0005125 ... P43490 19666527
    135013 3dkl:A (1.89) BS03 PRP 2.4.2.12 GO:0005125 ... P43490 19666527
    135014 3dkl:A (1.89) BS04 UNU 2.4.2.12 GO:0005125 ... P43490 19666527
    135015 3dkl:A (1.89) BS05 BEF 2.4.2.12 GO:0005125 ... P43490 19666527
    135016 3dkl:B (1.89) BS01 UNU 2.4.2.12 GO:0005125 ... P43490 19666527
    135017 3dkl:B (1.89) BS02 BEF 2.4.2.12 GO:0005125 ... P43490 19666527
    135018 3dkl:B (1.89) BS03 PRP 2.4.2.12 GO:0005125 ... P43490 19666527
    135019 3dkl:B (1.89) BS04 PRP 2.4.2.12 GO:0005125 ... P43490 19666527
    135020 3dkl:B (1.89) BS05 UNU 2.4.2.12 GO:0005125 ... P43490 19666527
    135021 3dkn:A (8.7) BS01 rna ? GO:0005048 ... Q60175 18611385
    135022 3dkn:A (8.7) BS02 rna ? GO:0005048 ... Q60175 18611385
    135023 3dkn:A (8.7) BS03 rna ? GO:0005048 ... Q60175 18611385
    135024 3dko:A (2.0) BS01 IHZ 2.7.10.1 GO:0004672 ... Q15375 N/A
    135025 3dkp:A (2.1) BS01 ADP 3.6.4.13 GO:0003676 ... Q9Y2R4 20941364
    135026 3dkp:A (2.1) BS02 ADP 3.6.4.13 GO:0003676 ... Q9Y2R4 20941364
    135027 3dks:A (1.9) BS01 peptide 1.8.4.2 GO:0015036 ... P52235 19389711
    135028 3dks:B (1.9) BS01 peptide 1.8.4.2 GO:0015036 ... P52235 19389711
    135029 3dks:C (1.9) BS01 peptide 1.8.4.2 GO:0015036 ... P52235 19389711
    135030 3dks:D (1.9) BS01 peptide 1.8.4.2 GO:0015036 ... P52235 19389711
    135031 3dkt:A (3.104) BS01 peptide 3.4.-.- GO:0140737 ... Q9WZP2 19172747
    135032 3dkt:B (3.104) BS01 peptide 3.4.-.- GO:0140737 ... Q9WZP2 19172747
    135033 3dkt:C (3.104) BS01 peptide 3.4.-.- GO:0140737 ... Q9WZP2 19172747
    135034 3dkt:D (3.104) BS01 peptide 3.4.-.- GO:0140737 ... Q9WZP2 19172747
    135035 3dkt:E (3.104) BS01 peptide 3.4.-.- GO:0140737 ... Q9WZP2 19172747
    135036 3dkt:F (3.104) BS01 peptide 3.4.-.- GO:0140737 ... Q9WZP2 19172747
    135037 3dkt:G (3.104) BS01 peptide 3.4.-.- GO:0140737 ... Q9WZP2 19172747
    135038 3dkt:H (3.104) BS01 peptide 3.4.-.- GO:0140737 ... Q9WZP2 19172747
    135039 3dkt:I (3.104) BS01 peptide 3.4.-.- GO:0140737 ... Q9WZP2 19172747
    135040 3dkt:J (3.104) BS01 peptide 3.4.-.- GO:0140737 ... Q9WZP2 19172747
    135041 3dkv:A (1.82) BS01 ZN 2.7.4.3 GO:0004017 ... P16304 N/A
    135042 3dkv:A (1.82) BS02 AP5 2.7.4.3 GO:0004017 ... P16304 N/A
    135043 3dkx:A (2.7) BS01 MN ? GO:0003677 ... P13921 19440202
    135044 3dkx:B (2.7) BS01 MN ? GO:0003677 ... P13921 19440202
    135045 3dkx:C (2.7) BS01 MN ? GO:0003677 ... P13921 19440202
    135046 3dkx:C (2.7) BS02 MG ? GO:0003677 ... P13921 19440202
    135047 3dky:A (3.6) BS01 MN ? GO:0003677 ... P13921 19440202
    135048 3dky:B (3.6) BS01 MN ? GO:0003677 ... P13921 19440202
    135049 3dky:C (3.6) BS01 MN ? GO:0003677 ... P13921 19440202
    135050 3dky:F (3.6) BS01 MN ? GO:0003677 ... P13921 19440202
    135051 3dl0:A (1.58) BS01 ZN 2.7.4.3 GO:0004017 ... P16304 24931334
    135052 3dl0:A (1.58) BS02 AP5 2.7.4.3 GO:0004017 ... P16304 24931334
    135053 3dl0:B (1.58) BS01 ZN 2.7.4.3 GO:0004017 ... P16304 24931334
    135054 3dl0:B (1.58) BS02 AP5 2.7.4.3 GO:0004017 ... P16304 24931334
    135055 3dl5:A (2.74) BS01 UMP N/A GO:0004146 ... N/A 18672899
    135056 3dl5:A (2.74) BS02 DHF N/A GO:0004146 ... N/A 18672899
    135057 3dl5:A (2.74) BS03 NDP N/A GO:0004146 ... N/A 18672899
    135058 3dl5:A (2.74) BS04 UMP N/A GO:0004146 ... N/A 18672899
    135059 3dl5:B (2.74) BS01 UMP N/A GO:0004146 ... N/A 18672899
    135060 3dl5:B (2.74) BS02 UMP N/A GO:0004146 ... N/A 18672899
    135061 3dl5:B (2.74) BS03 DHF N/A GO:0004146 ... N/A 18672899
    135062 3dl5:B (2.74) BS04 NDP N/A GO:0004146 ... N/A 18672899
    135063 3dl5:C (2.74) BS01 UMP N/A GO:0004146 ... N/A 18672899
    135064 3dl5:C (2.74) BS02 DHF N/A GO:0004146 ... N/A 18672899
    135065 3dl5:C (2.74) BS03 NDP N/A GO:0004146 ... N/A 18672899
    135066 3dl5:C (2.74) BS04 UMP N/A GO:0004146 ... N/A 18672899
    135067 3dl5:D (2.74) BS01 UMP N/A GO:0004146 ... N/A 18672899
    135068 3dl5:D (2.74) BS02 UMP N/A GO:0004146 ... N/A 18672899
    135069 3dl5:D (2.74) BS03 DHF N/A GO:0004146 ... N/A 18672899
    135070 3dl5:D (2.74) BS04 NDP N/A GO:0004146 ... N/A 18672899
    135071 3dl5:E (2.74) BS01 UMP N/A GO:0004146 ... N/A 18672899
    135072 3dl5:E (2.74) BS02 DHF N/A GO:0004146 ... N/A 18672899
    135073 3dl5:E (2.74) BS03 NDP N/A GO:0004146 ... N/A 18672899
    135074 3dl6:A (3.25) BS01 UMP N/A GO:0004146 ... N/A 18672899
    135075 3dl6:A (3.25) BS02 DHF N/A GO:0004146 ... N/A 18672899
    135076 3dl6:A (3.25) BS03 NDP N/A GO:0004146 ... N/A 18672899
    135077 3dl6:A (3.25) BS04 UMP N/A GO:0004146 ... N/A 18672899
    135078 3dl6:B (3.25) BS01 UMP N/A GO:0004146 ... N/A 18672899
    135079 3dl6:B (3.25) BS02 UMP N/A GO:0004146 ... N/A 18672899
    135080 3dl6:B (3.25) BS03 DHF N/A GO:0004146 ... N/A 18672899
    135081 3dl6:B (3.25) BS04 NDP N/A GO:0004146 ... N/A 18672899
    135082 3dl6:C (3.25) BS01 UMP N/A GO:0004146 ... N/A 18672899
    135083 3dl6:C (3.25) BS02 DHF N/A GO:0004146 ... N/A 18672899
    135084 3dl6:C (3.25) BS03 NDP N/A GO:0004146 ... N/A 18672899
    135085 3dl6:C (3.25) BS04 UMP N/A GO:0004146 ... N/A 18672899
    135086 3dl6:D (3.25) BS01 UMP N/A GO:0004146 ... N/A 18672899
    135087 3dl6:D (3.25) BS02 UMP N/A GO:0004146 ... N/A 18672899
    135088 3dl6:D (3.25) BS03 DHF N/A GO:0004146 ... N/A 18672899
    135089 3dl6:D (3.25) BS04 NDP N/A GO:0004146 ... N/A 18672899
    135090 3dl6:E (3.25) BS01 UMP N/A GO:0004146 ... N/A 18672899
    135091 3dl6:E (3.25) BS02 DHF N/A GO:0004146 ... N/A 18672899
    135092 3dl6:E (3.25) BS03 NDP N/A GO:0004146 ... N/A 18672899
    135093 3dl9:A (2.721) BS01 HEM 1.14.14.24 GO:0004497 ... Q6VVX0 N/A
    135094 3dl9:A (2.721) BS02 V2H 1.14.14.24 GO:0004497 ... Q6VVX0 N/A
    135095 3dl9:B (2.721) BS01 HEM 1.14.14.24 GO:0004497 ... Q6VVX0 N/A
    135096 3dl9:B (2.721) BS02 V2H 1.14.14.24 GO:0004497 ... Q6VVX0 N/A
    135097 3dla:A (2.35) BS01 DND 6.3.5.1 GO:0003952 ... P9WJJ3 19270703
    135098 3dla:A (2.35) BS02 ONL 6.3.5.1 GO:0003952 ... P9WJJ3 19270703
    135099 3dla:A (2.35) BS03 DND 6.3.5.1 GO:0003952 ... P9WJJ3 19270703
    135100 3dla:B (2.35) BS01 ONL 6.3.5.1 GO:0003952 ... P9WJJ3 19270703
    135101 3dla:B (2.35) BS02 DND 6.3.5.1 GO:0003952 ... P9WJJ3 19270703
    135102 3dla:B (2.35) BS03 DND 6.3.5.1 GO:0003952 ... P9WJJ3 19270703
    135103 3dla:C (2.35) BS01 ONL 6.3.5.1 GO:0003952 ... P9WJJ3 19270703
    135104 3dla:C (2.35) BS02 DND 6.3.5.1 GO:0003952 ... P9WJJ3 19270703
    135105 3dla:C (2.35) BS03 DND 6.3.5.1 GO:0003952 ... P9WJJ3 19270703
    135106 3dla:D (2.35) BS01 DND 6.3.5.1 GO:0003952 ... P9WJJ3 19270703
    135107 3dla:D (2.35) BS02 ONL 6.3.5.1 GO:0003952 ... P9WJJ3 19270703
    135108 3dla:D (2.35) BS03 DND 6.3.5.1 GO:0003952 ... P9WJJ3 19270703
    135109 3dlb:A (2.7) BS01 dna 3.1.24.- GO:0003676 ... Q746M7 18754009
    135110 3dlb:B (2.7) BS01 dna 3.1.24.- GO:0003676 ... Q746M7 18754009
    135111 3dlc:A (1.15) BS01 SAM ? GO:0003838 ... Q6LY14 N/A
    135112 3dle:A (2.5) BS01 GFA 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P04585 18665583 MOAD: ic50=2nM
    135113 3dlg:A (2.2) BS01 GWE 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P04585 18665583 MOAD: ic50=1.2nM
    135114 3dlh:A (3.0) BS01 dna 3.1.24.- GO:0003676 ... Q746M7 18754009
    135115 3dlh:A (3.0) BS02 MG 3.1.24.- GO:0003676 ... Q746M7 18754009
    135116 3dlh:B (3.0) BS01 dna 3.1.24.- GO:0003676 ... Q746M7 18754009
    135117 3dlj:A (2.26) BS01 ZN 3.4.13.20 GO:0004177 ... Q96KN2 N/A
    135118 3dlj:A (2.26) BS02 ZN 3.4.13.20 GO:0004177 ... Q96KN2 N/A
    135119 3dlj:B (2.26) BS01 ZN 3.4.13.20 GO:0004177 ... Q96KN2 N/A
    135120 3dlj:B (2.26) BS02 ZN 3.4.13.20 GO:0004177 ... Q96KN2 N/A
    135121 3dll:2 (3.5) BS01 rna ? GO:0003735 ... Q9RSH2 18757750
    135122 3dll:3 (3.5) BS01 rna ? GO:0003735 ... Q9RSW6 18757750
    135123 3dll:4 (3.5) BS01 rna ? GO:0003735 ... Q9RSK0 18757750
    135124 3dll:4 (3.5) BS02 ZN ? GO:0003735 ... Q9RSK0 18757750
    135125 3dll:A (3.5) BS01 rna ? GO:0002181 ... Q9RXJ9 18757750
    135126 3dll:B (3.5) BS01 rna ? GO:0003735 ... Q9RXK2 18757750
    135127 3dll:C (3.5) BS01 rna ? GO:0003735 ... Q9RXK1 18757750
    135128 3dll:D (3.5) BS01 rna ? GO:0000049 ... Q9RXJ0 18757750
    135129 3dll:D (3.5) BS02 rna ? GO:0000049 ... Q9RXJ0 18757750
    135130 3dll:E (3.5) BS01 rna ? GO:0002181 ... Q9RSL3 18757750
    135131 3dll:F (3.5) BS01 rna ? GO:0003735 ... Q9RSS7 18757750
    135132 3dll:G (3.5) BS01 rna ? GO:0003729 ... Q9RXY1 18757750
    135133 3dll:H (3.5) BS01 rna ? GO:0003735 ... Q9RXJ2 18757750
    135134 3dll:I (3.5) BS01 rna ? GO:0003735 ... Q9RSK9 18757750
    135135 3dll:J (3.5) BS01 rna ? GO:0003735 ... Q9RXJ5 18757750
    135136 3dll:J (3.5) BS02 rna ? GO:0003735 ... Q9RXJ5 18757750
    135137 3dll:K (3.5) BS01 rna ? GO:0003735 ... Q9RSJ5 18757750
    135138 3dll:L (3.5) BS01 rna ? GO:0003735 ... Q9RSL2 18757750
    135139 3dll:L (3.5) BS02 rna ? GO:0003735 ... Q9RSL2 18757750
    135140 3dll:M (3.5) BS01 rna ? GO:0003735 ... Q9RWB4 18757750
    135141 3dll:N (3.5) BS01 rna ? GO:0000027 ... Q9RSW7 18757750
    135142 3dll:O (3.5) BS01 rna ? GO:0003723 ... Q9RY64 18757750
    135143 3dll:P (3.5) BS01 rna ? GO:0003735 ... Q9RXJ7 18757750
    135144 3dll:Q (3.5) BS01 rna ? GO:0003735 ... Q9RXK0 18757750
    135145 3dll:R (3.5) BS01 rna ? GO:0003723 ... Q9RXJ1 18757750
    135146 3dll:S (3.5) BS01 rna ? GO:0003723 ... Q9RX88 18757750
    135147 3dll:S (3.5) BS02 rna ? GO:0003723 ... Q9RX88 18757750
    135148 3dll:T (3.5) BS01 rna ? GO:0003735 ... Q9RY65 18757750
    135149 3dll:U (3.5) BS01 rna ? GO:0003735 ... Q9RRG8 18757750
    135150 3dll:V (3.5) BS01 rna ? GO:0003735 ... Q9RXJ4 18757750
    135151 3dll:W (3.5) BS01 rna ? GO:0003735 ... Q9RSL0 18757750
    135152 3dll:W (3.5) BS02 rna ? GO:0003735 ... Q9RSL0 18757750
    135153 3dll:Y (3.5) BS01 rna ? GO:0003735 ... P49228 18757750
    135154 3dll:Y (3.5) BS02 ZN ? GO:0003735 ... P49228 18757750
    135155 3dln:A (1.91) BS01 GLU ? GO:0015276 ... P19492 19003990
    135156 3dlp:X (2.6) BS01 174 6.2.1.33 GO:0006631 ... Q8GN86 19320426
    135157 3dlr:A (2.2) BS01 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.26.4
    3.4.23.-
    GO:0003676 ... P14350 19036793
    135158 3dls:A (2.3) BS01 MG 2.7.11.1 GO:0004672 ... Q96RG2 20943661
    135159 3dls:A (2.3) BS02 MG 2.7.11.1 GO:0004672 ... Q96RG2 20943661
    135160 3dls:A (2.3) BS03 ADP 2.7.11.1 GO:0004672 ... Q96RG2 20943661
    135161 3dls:B (2.3) BS01 MG 2.7.11.1 GO:0004672 ... Q96RG2 20943661
    135162 3dls:B (2.3) BS02 MG 2.7.11.1 GO:0004672 ... Q96RG2 20943661
    135163 3dls:B (2.3) BS03 ADP 2.7.11.1 GO:0004672 ... Q96RG2 20943661
    135164 3dls:B (2.3) BS04 MG 2.7.11.1 GO:0004672 ... Q96RG2 20943661
    135165 3dls:C (2.3) BS01 MG 2.7.11.1 GO:0004672 ... Q96RG2 20943661
    135166 3dls:C (2.3) BS02 MG 2.7.11.1 GO:0004672 ... Q96RG2 20943661
    135167 3dls:C (2.3) BS03 MG 2.7.11.1 GO:0004672 ... Q96RG2 20943661
    135168 3dls:C (2.3) BS04 ADP 2.7.11.1 GO:0004672 ... Q96RG2 20943661
    135169 3dls:D (2.3) BS01 MG 2.7.11.1 GO:0004672 ... Q96RG2 20943661
    135170 3dls:D (2.3) BS02 MG 2.7.11.1 GO:0004672 ... Q96RG2 20943661
    135171 3dls:D (2.3) BS03 ADP 2.7.11.1 GO:0004672 ... Q96RG2 20943661
    135172 3dls:E (2.3) BS01 MG 2.7.11.1 GO:0004672 ... Q96RG2 20943661
    135173 3dls:E (2.3) BS02 ADP 2.7.11.1 GO:0004672 ... Q96RG2 20943661
    135174 3dls:F (2.3) BS01 MG 2.7.11.1 GO:0004672 ... Q96RG2 20943661
    135175 3dls:F (2.3) BS02 ADP 2.7.11.1 GO:0004672 ... Q96RG2 20943661
    135176 3dlt:A (1.9) BS01 BUA ? GO:0052689 ... B2CZF3 N/A
    135177 3dlt:A (1.9) BS02 BUA ? GO:0052689 ... B2CZF3 N/A
    135178 3dlz:A (1.85) BS01 MG 2.7.11.1 GO:0004672 ... Q8TF76 19918057
    135179 3dlz:A (1.85) BS02 AMP 2.7.11.1 GO:0004672 ... Q8TF76 19918057
    135180 3dm0:A (2.4) BS01 GLC ? GO:0000165 ... O24456
    P0AEX9
    18715992
    135181 3dm0:A (2.4) BS02 GLC ? GO:0000165 ... O24456
    P0AEX9
    18715992
    135182 3dm1:A (2.4) BS01 peptide ? N/A Q13185 22514736
    135183 3dm1:C (2.4) BS01 peptide ? N/A Q13185 22514736
    135184 3dm1:C (2.4) BS02 peptide ? N/A Q13185 22514736
    135185 3dm1:E (2.4) BS01 peptide ? N/A Q13185 22514736
    135186 3dm1:E (2.4) BS02 peptide ? N/A Q13185 22514736
    135187 3dm1:G (2.4) BS01 peptide ? N/A Q13185 22514736
    135188 3dm1:G (2.4) BS02 peptide ? N/A Q13185 22514736
    135189 3dm1:G (2.4) BS03 peptide ? N/A Q13185 22514736
    135190 3dm2:A (3.1) BS01 GWE 3.1.13.2
    3.1.26.13
    GO:0003676 ... P04585 18665583
    135191 3dm5:A (2.51) BS01 GDP 3.6.5.4 GO:0003924 ... Q8U070 18953414
    135192 3dm5:B (2.51) BS01 GDP 3.6.5.4 GO:0003924 ... Q8U070 18953414
    135193 3dm6:A (2.6) BS01 757 3.4.23.46 GO:0004190 ... P56817 18842420 BindingDB: IC50=37nM
    135194 3dm6:B (2.6) BS01 757 3.4.23.46 GO:0004190 ... P56817 18842420 BindingDB: IC50=37nM
    135195 3dm6:C (2.6) BS01 757 3.4.23.46 GO:0004190 ... P56817 18842420 BindingDB: IC50=37nM
    135196 3dme:A (1.7) BS01 FAD ? GO:0016614 ... Q7VU70 N/A
    135197 3dme:B (1.7) BS01 FAD ? GO:0016614 ... Q7VU70 N/A
    135198 3dmf:A (1.58) BS01 SAM 2.1.1.- GO:0000154 ... Q5SKW0 18667428
    135199 3dmg:A (1.55) BS01 SAH 2.1.1.- GO:0000154 ... Q5SKW0 18667428
    135200 3dmh:A (1.55) BS01 SAM 2.1.1.- GO:0000154 ... Q5SKW0 18667428

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).