SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    136201 3dzi:B (1.73) BS02 GTP 2.4.99.20
    3.2.2.-
    3.2.2.6
    GO:0061809 ... P28907 18940667
    136202 3dzj:A (1.9) BS01 NMN 2.4.99.20
    3.2.2.-
    3.2.2.6
    GO:0061809 ... P28907 18940667
    136203 3dzj:B (1.9) BS01 NMN 2.4.99.20
    3.2.2.-
    3.2.2.6
    GO:0061809 ... P28907 18940667
    136204 3dzk:A (1.81) BS01 NMN 2.4.99.20
    3.2.2.-
    3.2.2.6
    GO:0061809 ... P28907 18940667
    136205 3dzk:B (1.81) BS01 NMN 2.4.99.20
    3.2.2.-
    3.2.2.6
    GO:0061809 ... P28907 18940667
    136206 3dzl:A (1.75) BS01 3OC ? GO:0017000 ... Q396C9 19053436
    136207 3dzl:A (1.75) BS02 3OC ? GO:0017000 ... Q396C9 19053436
    136208 3dzl:B (1.75) BS01 3OC ? GO:0017000 ... Q396C9 19053436
    136209 3dzl:B (1.75) BS02 3OC ? GO:0017000 ... Q396C9 19053436
    136210 3dzm:A (2.801) BS01 CA ? N/A Q72JD8 19101566
    136211 3dzm:A (2.801) BS02 C8E ? N/A Q72JD8 19101566
    136212 3dzm:A (2.801) BS03 C8E ? N/A Q72JD8 19101566
    136213 3dzm:B (2.801) BS01 CA ? N/A Q72JD8 19101566
    136214 3dzm:B (2.801) BS02 C8E ? N/A Q72JD8 19101566
    136215 3dzm:B (2.801) BS03 C8E ? N/A Q72JD8 19101566
    136216 3dzm:C (2.801) BS01 CA ? N/A Q72JD8 19101566
    136217 3dzm:C (2.801) BS02 C8E ? N/A Q72JD8 19101566
    136218 3dzm:C (2.801) BS03 C8E ? N/A Q72JD8 19101566
    136219 3dzq:A (1.75) BS01 IFC 2.7.10.1 GO:0004672 ... P29320 N/A
    136220 3dzt:A (1.8) BS01 EAH ? GO:0005549 ... P18153 19234127 MOAD: Kd=60.2nM
    136221 3dzu:A (3.2) BS01 dna ? GO:0000122 ... P19793 19043829
    136222 3dzu:A (3.2) BS02 dna ? GO:0000122 ... P19793 19043829
    136223 3dzu:A (3.2) BS03 peptide ? GO:0000122 ... P19793 19043829
    136224 3dzu:A (3.2) BS04 ZN ? GO:0000122 ... P19793 19043829
    136225 3dzu:A (3.2) BS05 ZN ? GO:0000122 ... P19793 19043829
    136226 3dzu:A (3.2) BS06 9CR ? GO:0000122 ... P19793 19043829 BindingDB: EC50=100nM, Ki=583nM, IC50=32nM, Kd=240nM
    136227 3dzu:D (3.2) BS01 dna ? GO:0003677 ... P37231 19043829
    136228 3dzu:D (3.2) BS02 dna ? GO:0003677 ... P37231 19043829
    136229 3dzu:D (3.2) BS03 peptide ? GO:0003677 ... P37231 19043829
    136230 3dzu:D (3.2) BS04 ZN ? GO:0003677 ... P37231 19043829
    136231 3dzu:D (3.2) BS05 ZN ? GO:0003677 ... P37231 19043829
    136232 3dzu:D (3.2) BS06 PLB ? GO:0003677 ... P37231 19043829 BindingDB: EC50=1300nM
    136233 3dzv:A (2.57) BS01 ADP 2.7.1.50 GO:0000287 ... Q830K4 N/A
    136234 3dzv:B (2.57) BS01 ADP 2.7.1.50 GO:0000287 ... Q830K4 N/A
    136235 3dzw:A (1.7) BS01 MAN ? GO:0005537 ... C0HM45 N/A
    136236 3dzw:A (1.7) BS02 MAN ? GO:0005537 ... C0HM45 N/A
    136237 3dzw:A (1.7) BS03 MAN ? GO:0005537 ... C0HM45 N/A
    136238 3dzw:B (1.7) BS01 MAN ? GO:0005537 ... C0HM45 N/A
    136239 3dzw:B (1.7) BS02 MAN ? GO:0005537 ... C0HM45 N/A
    136240 3dzw:B (1.7) BS03 MAN ? GO:0005537 ... C0HM45 N/A
    136241 3dzy:A (3.1) BS01 dna ? GO:0000122 ... P19793 19043829
    136242 3dzy:A (3.1) BS02 dna ? GO:0000122 ... P19793 19043829
    136243 3dzy:A (3.1) BS03 peptide ? GO:0000122 ... P19793 19043829
    136244 3dzy:A (3.1) BS04 9CR ? GO:0000122 ... P19793 19043829 BindingDB: EC50=100nM, Ki=583nM, IC50=32nM, Kd=240nM
    136245 3dzy:A (3.1) BS05 ZN ? GO:0000122 ... P19793 19043829
    136246 3dzy:A (3.1) BS06 ZN ? GO:0000122 ... P19793 19043829
    136247 3dzy:D (3.1) BS01 dna ? GO:0003677 ... P37231 19043829
    136248 3dzy:D (3.1) BS02 dna ? GO:0003677 ... P37231 19043829
    136249 3dzy:D (3.1) BS03 peptide ? GO:0003677 ... P37231 19043829
    136250 3dzy:D (3.1) BS04 BRL ? GO:0003677 ... P37231 19043829 BindingDB: EC50=40nM, IC50=1.000000nM, Ki=8nM, Kd=0.145000nM
    136251 3dzy:D (3.1) BS05 ZN ? GO:0003677 ... P37231 19043829
    136252 3dzy:D (3.1) BS06 ZN ? GO:0003677 ... P37231 19043829
    136253 3e00:A (3.1) BS01 dna ? GO:0000122 ... P19793 19043829
    136254 3e00:A (3.1) BS02 dna ? GO:0000122 ... P19793 19043829
    136255 3e00:A (3.1) BS03 peptide ? GO:0000122 ... P19793 19043829
    136256 3e00:A (3.1) BS04 ZN ? GO:0000122 ... P19793 19043829
    136257 3e00:A (3.1) BS05 ZN ? GO:0000122 ... P19793 19043829
    136258 3e00:A (3.1) BS06 9CR ? GO:0000122 ... P19793 19043829 BindingDB: EC50=100nM, Ki=583nM, IC50=32nM, Kd=240nM
    136259 3e00:D (3.1) BS01 dna ? GO:0003677 ... P37231 19043829
    136260 3e00:D (3.1) BS02 dna ? GO:0003677 ... P37231 19043829
    136261 3e00:D (3.1) BS03 peptide ? GO:0003677 ... P37231 19043829
    136262 3e00:D (3.1) BS04 ZN ? GO:0003677 ... P37231 19043829
    136263 3e00:D (3.1) BS05 ZN ? GO:0003677 ... P37231 19043829
    136264 3e00:D (3.1) BS06 GW9 ? GO:0003677 ... P37231 19043829 BindingDB: EC50=2.0nM
    136265 3e01:A (2.95) BS01 PZ2 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P04585 19007201 BindingDB: EC50=17nM
    136266 3e02:A (1.9) BS01 ZN ? GO:0043720 ... Q13I95 N/A
    136267 3e03:A (1.69) BS01 CA ? N/A Q8P5Q1 N/A
    136268 3e08:A (1.9) BS01 TRP 1.13.11.11 GO:0004833 ... Q8PDA8 18783250
    136269 3e08:A (1.9) BS02 HEM 1.13.11.11 GO:0004833 ... Q8PDA8 18783250
    136270 3e08:A (1.9) BS03 TRP 1.13.11.11 GO:0004833 ... Q8PDA8 18783250
    136271 3e08:A (1.9) BS04 TRP 1.13.11.11 GO:0004833 ... Q8PDA8 18783250
    136272 3e08:A (1.9) BS05 TRP 1.13.11.11 GO:0004833 ... Q8PDA8 18783250
    136273 3e08:B (1.9) BS01 HEM 1.13.11.11 GO:0004833 ... Q8PDA8 18783250
    136274 3e08:B (1.9) BS02 TRP 1.13.11.11 GO:0004833 ... Q8PDA8 18783250
    136275 3e08:B (1.9) BS03 TRP 1.13.11.11 GO:0004833 ... Q8PDA8 18783250
    136276 3e08:C (1.9) BS01 TRP 1.13.11.11 GO:0004833 ... Q8PDA8 18783250
    136277 3e08:C (1.9) BS02 TRP 1.13.11.11 GO:0004833 ... Q8PDA8 18783250
    136278 3e08:C (1.9) BS03 HEM 1.13.11.11 GO:0004833 ... Q8PDA8 18783250
    136279 3e08:C (1.9) BS04 TRP 1.13.11.11 GO:0004833 ... Q8PDA8 18783250
    136280 3e08:D (1.9) BS01 TRP 1.13.11.11 GO:0004833 ... Q8PDA8 18783250
    136281 3e08:D (1.9) BS02 TRP 1.13.11.11 GO:0004833 ... Q8PDA8 18783250
    136282 3e08:D (1.9) BS03 TRP 1.13.11.11 GO:0004833 ... Q8PDA8 18783250
    136283 3e08:D (1.9) BS04 HEM 1.13.11.11 GO:0004833 ... Q8PDA8 18783250
    136284 3e08:E (1.9) BS01 TRP 1.13.11.11 GO:0004833 ... Q8PDA8 18783250
    136285 3e08:E (1.9) BS02 HEM 1.13.11.11 GO:0004833 ... Q8PDA8 18783250
    136286 3e08:E (1.9) BS03 TRP 1.13.11.11 GO:0004833 ... Q8PDA8 18783250
    136287 3e08:F (1.9) BS01 TRP 1.13.11.11 GO:0004833 ... Q8PDA8 18783250
    136288 3e08:F (1.9) BS02 TRP 1.13.11.11 GO:0004833 ... Q8PDA8 18783250
    136289 3e08:F (1.9) BS03 HEM 1.13.11.11 GO:0004833 ... Q8PDA8 18783250
    136290 3e08:F (1.9) BS04 TRP 1.13.11.11 GO:0004833 ... Q8PDA8 18783250
    136291 3e08:G (1.9) BS01 TRP 1.13.11.11 GO:0004833 ... Q8PDA8 18783250
    136292 3e08:G (1.9) BS02 TRP 1.13.11.11 GO:0004833 ... Q8PDA8 18783250
    136293 3e08:G (1.9) BS03 HEM 1.13.11.11 GO:0004833 ... Q8PDA8 18783250
    136294 3e08:G (1.9) BS04 TRP 1.13.11.11 GO:0004833 ... Q8PDA8 18783250
    136295 3e08:H (1.9) BS01 TRP 1.13.11.11 GO:0004833 ... Q8PDA8 18783250
    136296 3e08:H (1.9) BS02 TRP 1.13.11.11 GO:0004833 ... Q8PDA8 18783250
    136297 3e08:H (1.9) BS03 TRP 1.13.11.11 GO:0004833 ... Q8PDA8 18783250
    136298 3e08:H (1.9) BS04 HEM 1.13.11.11 GO:0004833 ... Q8PDA8 18783250
    136299 3e0b:A (2.25) BS01 NDP 1.5.1.3 GO:0004146 ... Q81R22 19007108
    136300 3e0b:A (2.25) BS02 N22 1.5.1.3 GO:0004146 ... Q81R22 19007108 MOAD: ic50=0.89uM
    BindingDB: IC50=890nM, Ki=300nM
    136301 3e0b:B (2.25) BS01 NDP 1.5.1.3 GO:0004146 ... Q81R22 19007108
    136302 3e0b:B (2.25) BS02 N22 1.5.1.3 GO:0004146 ... Q81R22 19007108 MOAD: ic50=0.89uM
    BindingDB: IC50=890nM, Ki=300nM
    136303 3e0d:A (4.6) BS01 dna 2.7.7.7 GO:0003676 ... Q9XDH5 18691598
    136304 3e0d:A (4.6) BS02 dna 2.7.7.7 GO:0003676 ... Q9XDH5 18691598
    136305 3e0d:A (4.6) BS03 DTP 2.7.7.7 GO:0003676 ... Q9XDH5 18691598
    136306 3e0d:B (4.6) BS01 dna 2.7.7.7 GO:0003676 ... Q9XDH5 18691598
    136307 3e0d:B (4.6) BS02 dna 2.7.7.7 GO:0003676 ... Q9XDH5 18691598
    136308 3e0d:B (4.6) BS03 CA 2.7.7.7 GO:0003676 ... Q9XDH5 18691598
    136309 3e0d:B (4.6) BS04 DTP 2.7.7.7 GO:0003676 ... Q9XDH5 18691598
    136310 3e0f:A (2.4) BS01 ZN ? GO:0003824 ... A1A2L3 21538547
    136311 3e0f:A (2.4) BS02 FE ? GO:0003824 ... A1A2L3 21538547
    136312 3e0f:A (2.4) BS03 FE ? GO:0003824 ... A1A2L3 21538547
    136313 3e0f:A (2.4) BS04 PO4 ? GO:0003824 ... A1A2L3 21538547
    136314 3e0f:A (2.4) BS05 PO4 ? GO:0003824 ... A1A2L3 21538547
    136315 3e0i:A (1.703) BS01 CU 2.5.1.55 GO:0005737 ... O66496 19228070
    136316 3e0i:A (1.703) BS02 PO4 2.5.1.55 GO:0005737 ... O66496 19228070
    136317 3e0i:A (1.703) BS03 PEP 2.5.1.55 GO:0005737 ... O66496 19228070
    136318 3e0i:B (1.703) BS01 CU 2.5.1.55 GO:0005737 ... O66496 19228070
    136319 3e0i:B (1.703) BS02 PEP 2.5.1.55 GO:0005737 ... O66496 19228070
    136320 3e0l:A (2.37) BS01 ZN 3.5.4.3 GO:0005515 ... Q9Y2T3 19470646
    136321 3e0l:B (2.37) BS01 ZN 3.5.4.3 GO:0005515 ... Q9Y2T3 19470646
    136322 3e0m:A (2.4) BS01 peptide 1.8.4.11
    1.8.4.12
    GO:0005737 ... P0A3Q9 19400786
    136323 3e0m:B (2.4) BS01 peptide 1.8.4.11
    1.8.4.12
    GO:0005737 ... P0A3Q9 19400786
    136324 3e0m:C (2.4) BS01 peptide 1.8.4.11
    1.8.4.12
    GO:0005737 ... P0A3Q9 19400786
    136325 3e0n:B (1.7) BS01 peptide 3.4.21.- GO:0004252 ... Q16651 19388054
    136326 3e0p:B (1.7) BS01 B3C 3.4.21.- GO:0004252 ... Q16651 18752942
    136327 3e0q:A (1.9) BS01 JFD 2.4.2.1 GO:0003824 ... Q9BMI9 20122887
    136328 3e0q:B (1.9) BS01 JFD 2.4.2.1 GO:0003824 ... Q9BMI9 20122887
    136329 3e0q:C (1.9) BS01 JFD 2.4.2.1 GO:0003824 ... Q9BMI9 20122887
    136330 3e0x:A (1.45) BS01 OXE ? GO:0016020 ... Q97KV0 N/A
    136331 3e0x:B (1.45) BS01 OXE ? GO:0016020 ... Q97KV0 N/A
    136332 3e10:A (1.4) BS01 FMN ? GO:0016491 ... Q97IT9 N/A
    136333 3e10:A (1.4) BS02 FMN ? GO:0016491 ... Q97IT9 N/A
    136334 3e10:B (1.4) BS01 FMN ? GO:0016491 ... Q97IT9 N/A
    136335 3e10:B (1.4) BS02 FMN ? GO:0016491 ... Q97IT9 N/A
    136336 3e12:A (1.7) BS01 CU 2.5.1.55 GO:0005737 ... O66496 19228070
    136337 3e12:A (1.7) BS02 PO4 2.5.1.55 GO:0005737 ... O66496 19228070
    136338 3e12:A (1.7) BS03 KD0 2.5.1.55 GO:0005737 ... O66496 19228070
    136339 3e12:B (1.7) BS01 CU 2.5.1.55 GO:0005737 ... O66496 19228070
    136340 3e12:B (1.7) BS02 PO4 2.5.1.55 GO:0005737 ... O66496 19228070
    136341 3e12:B (1.7) BS03 KD0 2.5.1.55 GO:0005737 ... O66496 19228070
    136342 3e13:X (1.6) BS01 FE ? GO:0030288 ... Q0PBW4 N/A
    136343 3e15:D (2.0) BS01 AZI 1.1.1.49 GO:0005975 ... A5K3M1 N/A
    136344 3e16:B (1.6) BS01 B4C 3.4.21.- GO:0004252 ... Q16651 18752942
    136345 3e18:A (1.95) BS01 NAD ? GO:0000166 ... Q929L3 N/A
    136346 3e18:B (1.95) BS01 NAD ? GO:0000166 ... Q929L3 N/A
    136347 3e1f:1 (3.0) BS01 MG 3.2.1.23 GO:0000287 ... P00722 19472413
    136348 3e1f:1 (3.0) BS02 MG 3.2.1.23 GO:0000287 ... P00722 19472413
    136349 3e1f:1 (3.0) BS03 GAL 3.2.1.23 GO:0000287 ... P00722 19472413
    136350 3e1f:1 (3.0) BS04 GAL 3.2.1.23 GO:0000287 ... P00722 19472413
    136351 3e1f:2 (3.0) BS01 MG 3.2.1.23 GO:0000287 ... P00722 19472413
    136352 3e1f:2 (3.0) BS02 MG 3.2.1.23 GO:0000287 ... P00722 19472413
    136353 3e1f:2 (3.0) BS03 MG 3.2.1.23 GO:0000287 ... P00722 19472413
    136354 3e1f:2 (3.0) BS04 GAL 3.2.1.23 GO:0000287 ... P00722 19472413
    136355 3e1f:2 (3.0) BS05 GAL 3.2.1.23 GO:0000287 ... P00722 19472413
    136356 3e1f:3 (3.0) BS01 MG 3.2.1.23 GO:0000287 ... P00722 19472413
    136357 3e1f:3 (3.0) BS02 MG 3.2.1.23 GO:0000287 ... P00722 19472413
    136358 3e1f:3 (3.0) BS03 GAL 3.2.1.23 GO:0000287 ... P00722 19472413
    136359 3e1f:4 (3.0) BS01 MG 3.2.1.23 GO:0000287 ... P00722 19472413
    136360 3e1f:4 (3.0) BS02 GAL 3.2.1.23 GO:0000287 ... P00722 19472413
    136361 3e1f:4 (3.0) BS03 MG 3.2.1.23 GO:0000287 ... P00722 19472413
    136362 3e1i:B (2.3) BS01 CA ? GO:0005102 ... P02675 19075185
    136363 3e1i:B (2.3) BS02 CA ? GO:0005102 ... P02675 19075185
    136364 3e1i:C (2.3) BS01 peptide ? GO:0005102 ... P02679 19075185
    136365 3e1i:C (2.3) BS02 CA ? GO:0005102 ... P02679 19075185
    136366 3e1i:C (2.3) BS03 CA ? GO:0005102 ... P02679 19075185
    136367 3e1i:E (2.3) BS01 CA ? GO:0005102 ... P02675 19075185
    136368 3e1i:E (2.3) BS02 CA ? GO:0005102 ... P02675 19075185
    136369 3e1i:F (2.3) BS01 peptide ? GO:0005102 ... P02679 19075185
    136370 3e1i:F (2.3) BS02 CA ? GO:0005102 ... P02679 19075185
    136371 3e1j:A (2.7) BS01 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19391621
    136372 3e1j:B (2.7) BS01 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19391621
    136373 3e1j:C (2.7) BS01 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19391621
    136374 3e1j:D (2.7) BS01 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19391621
    136375 3e1j:E (2.7) BS01 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19391621
    136376 3e1j:F (2.7) BS01 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19391621
    136377 3e1j:G (2.7) BS01 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19391621
    136378 3e1j:H (2.7) BS01 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19391621
    136379 3e1j:I (2.7) BS01 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19391621
    136380 3e1j:J (2.7) BS01 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19391621
    136381 3e1j:K (2.7) BS01 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19391621
    136382 3e1j:L (2.7) BS01 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19391621
    136383 3e1k:A (3.0) BS01 peptide ? GO:0000166 ... Q06433 18701455
    136384 3e1k:C (3.0) BS01 peptide ? GO:0000166 ... Q06433 18701455
    136385 3e1k:E (3.0) BS01 peptide ? GO:0000166 ... Q06433 18701455
    136386 3e1k:G (3.0) BS01 peptide ? GO:0000166 ... Q06433 18701455
    136387 3e1k:I (3.0) BS01 peptide ? GO:0000166 ... Q06433 18701455
    136388 3e1k:K (3.0) BS01 peptide ? GO:0000166 ... Q06433 18701455
    136389 3e1k:M (3.0) BS01 peptide ? GO:0000166 ... Q06433 18701455
    136390 3e1k:O (3.0) BS01 peptide ? GO:0000166 ... Q06433 18701455
    136391 3e1l:A (2.5) BS01 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19391621
    136392 3e1l:B (2.5) BS01 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19391621
    136393 3e1l:C (2.5) BS01 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19391621
    136394 3e1l:D (2.5) BS01 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19391621
    136395 3e1l:E (2.5) BS01 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19391621
    136396 3e1l:F (2.5) BS01 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19391621
    136397 3e1l:G (2.5) BS01 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19391621
    136398 3e1l:H (2.5) BS01 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19391621
    136399 3e1l:I (2.5) BS01 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19391621
    136400 3e1l:J (2.5) BS01 HEM 1.16.3.1 GO:0004322 ... P0ABD3 19391621

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).