SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    140401 3fby:C (3.15) BS13 CA ? GO:0005509 ... P49747 19276170
    140402 3fby:C (3.15) BS14 CA ? GO:0005509 ... P49747 19276170
    140403 3fby:C (3.15) BS15 CA ? GO:0005509 ... P49747 19276170
    140404 3fby:C (3.15) BS16 CA ? GO:0005509 ... P49747 19276170
    140405 3fby:C (3.15) BS17 CA ? GO:0005509 ... P49747 19276170
    140406 3fby:C (3.15) BS18 CA ? GO:0005509 ... P49747 19276170
    140407 3fby:C (3.15) BS19 CA ? GO:0005509 ... P49747 19276170
    140408 3fby:C (3.15) BS20 CA ? GO:0005509 ... P49747 19276170
    140409 3fby:C (3.15) BS21 CA ? GO:0005509 ... P49747 19276170
    140410 3fby:C (3.15) BS22 CA ? GO:0005509 ... P49747 19276170
    140411 3fby:C (3.15) BS23 CA ? GO:0005509 ... P49747 19276170
    140412 3fby:C (3.15) BS24 CA ? GO:0005509 ... P49747 19276170
    140413 3fby:C (3.15) BS25 CA ? GO:0005509 ... P49747 19276170
    140414 3fby:C (3.15) BS26 CA ? GO:0005509 ... P49747 19276170
    140415 3fby:C (3.15) BS27 CA ? GO:0005509 ... P49747 19276170
    140416 3fby:C (3.15) BS28 CA ? GO:0005509 ... P49747 19276170
    140417 3fby:C (3.15) BS29 CA ? GO:0005509 ... P49747 19276170
    140418 3fc1:X (2.4) BS01 52P 2.7.11.24 GO:0000165 ... Q16539 16302819 BindingDB: Kd=2.8nM, IC50=70nM, Ki=0.800000nM
    140419 3fc2:A (2.45) BS01 IBI 2.7.11.21 GO:0004672 ... P53350 19383823 MOAD: ic50=0.87nM
    BindingDB: IC50=0.870000nM
    140420 3fc2:A (2.45) BS02 ZN 2.7.11.21 GO:0004672 ... P53350 19383823
    140421 3fc3:A (1.75) BS01 dna ? N/A Q9ZL26 19380375
    140422 3fc3:A (1.75) BS02 dna ? N/A Q9ZL26 19380375
    140423 3fc3:A (1.75) BS03 ZN ? N/A Q9ZL26 19380375
    140424 3fc3:A (1.75) BS04 ZN ? N/A Q9ZL26 19380375
    140425 3fc3:A (1.75) BS05 NA ? N/A Q9ZL26 19380375
    140426 3fc3:B (1.75) BS01 dna ? N/A Q9ZL26 19380375
    140427 3fc3:B (1.75) BS02 dna ? N/A Q9ZL26 19380375
    140428 3fc3:B (1.75) BS03 ZN ? N/A Q9ZL26 19380375
    140429 3fc3:B (1.75) BS04 ZN ? N/A Q9ZL26 19380375
    140430 3fc3:B (1.75) BS05 NA ? N/A Q9ZL26 19380375
    140431 3fc3:B (1.75) BS06 NA ? N/A Q9ZL26 19380375
    140432 3fc4:A (1.79) BS01 MG 1.2.99.7 GO:0005506 ... Q46509 19459677
    140433 3fc4:A (1.79) BS02 FES 1.2.99.7 GO:0005506 ... Q46509 19459677
    140434 3fc4:A (1.79) BS03 FES 1.2.99.7 GO:0005506 ... Q46509 19459677
    140435 3fc4:A (1.79) BS04 PCD 1.2.99.7 GO:0005506 ... Q46509 19459677
    140436 3fc4:A (1.79) BS05 EDO 1.2.99.7 GO:0005506 ... Q46509 19459677 MOAD: Ki=1.9mM
    140437 3fc5:A (2.59) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 N/A
    140438 3fc5:A (2.59) BS02 ZN 1.14.13.39 GO:0004517 ... P29476 N/A
    140439 3fc5:A (2.59) BS03 H4B 1.14.13.39 GO:0004517 ... P29476 N/A
    140440 3fc5:A (2.59) BS04 ARG 1.14.13.39 GO:0004517 ... P29476 N/A
    140441 3fc5:A (2.59) BS05 H4B 1.14.13.39 GO:0004517 ... P29476 N/A
    140442 3fc5:B (2.59) BS01 ZN 1.14.13.39 GO:0004517 ... P29476 N/A
    140443 3fc5:B (2.59) BS02 H4B 1.14.13.39 GO:0004517 ... P29476 N/A
    140444 3fc5:B (2.59) BS03 H4B 1.14.13.39 GO:0004517 ... P29476 N/A
    140445 3fc5:B (2.59) BS04 HEM 1.14.13.39 GO:0004517 ... P29476 N/A
    140446 3fc5:B (2.59) BS05 ARG 1.14.13.39 GO:0004517 ... P29476 N/A
    140447 3fc6:A (2.063) BS01 REA ? GO:0003677 ... P19793 19167885
    140448 3fc6:B (2.063) BS01 LX2 ? GO:0003677 ... Q9Z0Y9 19167885
    140449 3fc6:C (2.063) BS01 REA ? GO:0003677 ... P19793 19167885
    140450 3fc6:D (2.063) BS01 LX2 ? GO:0003677 ... Q9Z0Y9 19167885
    140451 3fc8:A (1.85) BS01 IFA ? GO:0001523 ... P02766 19125186 MOAD: ic50=4.1uM
    140452 3fc8:B (1.85) BS01 IFA ? GO:0001523 ... P02766 19125186 MOAD: ic50=4.1uM
    140453 3fc9:A (2.8) BS01 CTP 2.7.4.6 GO:0004550 ... Q5UQL3 19439473
    140454 3fc9:B (2.8) BS01 CDP 2.7.4.6 GO:0004550 ... Q5UQL3 19439473
    140455 3fc9:C (2.8) BS01 CDP 2.7.4.6 GO:0004550 ... Q5UQL3 19439473
    140456 3fc9:D (2.8) BS01 CDP 2.7.4.6 GO:0004550 ... Q5UQL3 19439473
    140457 3fc9:E (2.8) BS01 CDP 2.7.4.6 GO:0004550 ... Q5UQL3 19439473
    140458 3fc9:F (2.8) BS01 CDP 2.7.4.6 GO:0004550 ... Q5UQL3 19439473
    140459 3fcb:A (1.8) BS01 IFB ? GO:0001523 ... P02766 19125186 MOAD: ic50=4.9uM
    140460 3fcb:B (1.8) BS01 IFB ? GO:0001523 ... P02766 19125186 MOAD: ic50=4.9uM
    140461 3fcc:A (2.32) BS01 ATP 6.2.1.54 GO:0005524 ... Q81G39 19324056
    140462 3fce:A (1.9) BS01 ATP 6.2.1.54 GO:0005524 ... Q81G39 19324056
    140463 3fcf:A (1.84) BS01 FCF 3.2.2.27 GO:0004844 ... P13051 19396178 MOAD: ic50=40uM
    BindingDB: IC50=4.0e+4nM
    140464 3fci:A (1.27) BS01 3FI 3.2.2.27 GO:0004844 ... P13051 19396178 MOAD: ic50=1.3uM
    BindingDB: IC50=1.3e+3nM
    140465 3fcj:A (2.4) BS01 FAD 1.7.3.1 GO:0003995 ... Q8X1D8 19926855
    140466 3fcj:A (2.4) BS02 NIE 1.7.3.1 GO:0003995 ... Q8X1D8 19926855
    140467 3fcj:A (2.4) BS03 FAD 1.7.3.1 GO:0003995 ... Q8X1D8 19926855
    140468 3fcj:B (2.4) BS01 FAD 1.7.3.1 GO:0003995 ... Q8X1D8 19926855
    140469 3fcj:B (2.4) BS02 FAD 1.7.3.1 GO:0003995 ... Q8X1D8 19926855
    140470 3fcj:C (2.4) BS01 FAD 1.7.3.1 GO:0003995 ... Q8X1D8 19926855
    140471 3fcj:C (2.4) BS02 NIE 1.7.3.1 GO:0003995 ... Q8X1D8 19926855
    140472 3fcj:C (2.4) BS03 FAD 1.7.3.1 GO:0003995 ... Q8X1D8 19926855
    140473 3fcj:D (2.4) BS01 FAD 1.7.3.1 GO:0003995 ... Q8X1D8 19926855
    140474 3fcj:D (2.4) BS02 FAD 1.7.3.1 GO:0003995 ... Q8X1D8 19926855
    140475 3fcj:D (2.4) BS03 NIE 1.7.3.1 GO:0003995 ... Q8X1D8 19926855
    140476 3fck:B (1.64) BS01 FCK 3.2.2.27 GO:0004844 ... P13051 19396178 BindingDB: IC50=1.00e+5nM
    140477 3fcl:A (1.7) BS01 3FL 3.2.2.27 GO:0004844 ... P13051 19396178 MOAD: ic50=315uM
    BindingDB: IC50=3.15e+5nM
    140478 3fcl:B (1.7) BS01 3FL 3.2.2.27 GO:0004844 ... P13051 19396178 MOAD: ic50=315uM
    BindingDB: IC50=3.15e+5nM
    140479 3fcl:B (1.7) BS02 3FL 3.2.2.27 GO:0004844 ... P13051 19396178 MOAD: ic50=315uM
    BindingDB: IC50=3.15e+5nM
    140480 3fcm:A (2.2) BS01 MN ? N/A A0A0H2YP99 N/A
    140481 3fcm:B (2.2) BS01 MN ? N/A A0A0H2YP99 N/A
    140482 3fco:A (2.65) BS01 NAP 1.1.1.146
    1.1.1.201
    GO:0005496 ... P28845 19185488
    140483 3fco:A (2.65) BS02 IIG 1.1.1.146
    1.1.1.201
    GO:0005496 ... P28845 19185488 BindingDB: IC50=52nM
    140484 3fco:B (2.65) BS01 NAP 1.1.1.146
    1.1.1.201
    GO:0005496 ... P28845 19185488
    140485 3fco:B (2.65) BS02 IIG 1.1.1.146
    1.1.1.201
    GO:0005496 ... P28845 19185488 BindingDB: IC50=52nM
    140486 3fcp:A (1.8) BS01 MG ? GO:0003824 ... A6T9N5 N/A
    140487 3fcp:B (1.8) BS01 MG ? GO:0003824 ... A6T9N5 N/A
    140488 3fcp:C (1.8) BS01 MG ? GO:0003824 ... A6T9N5 N/A
    140489 3fcp:D (1.8) BS01 MG ? GO:0003824 ... A6T9N5 N/A
    140490 3fcp:E (1.8) BS01 MG ? GO:0003824 ... A6T9N5 N/A
    140491 3fcp:F (1.8) BS01 MG ? GO:0003824 ... A6T9N5 N/A
    140492 3fcp:G (1.8) BS01 MG ? GO:0003824 ... A6T9N5 N/A
    140493 3fcp:H (1.8) BS01 MG ? GO:0003824 ... A6T9N5 N/A
    140494 3fcq:A (1.75) BS01 ZN 3.4.24.27 GO:0004222 ... P00800 20394106
    140495 3fcq:A (1.75) BS02 CA 3.4.24.27 GO:0004222 ... P00800 20394106
    140496 3fcq:A (1.75) BS03 CA 3.4.24.27 GO:0004222 ... P00800 20394106
    140497 3fcq:A (1.75) BS04 CA 3.4.24.27 GO:0004222 ... P00800 20394106
    140498 3fcq:A (1.75) BS05 CA 3.4.24.27 GO:0004222 ... P00800 20394106
    140499 3fcq:A (1.75) BS06 M3S 3.4.24.27 GO:0004222 ... P00800 20394106 MOAD: Ki=1.7mM
    140500 3fcr:A (1.8) BS01 PLP 2.6.1.- GO:0030170 ... N/A N/A
    140501 3fcs:A (2.55) BS01 CA ? GO:0001525 ... P08514 19111664
    140502 3fcs:A (2.55) BS02 CA ? GO:0001525 ... P08514 19111664
    140503 3fcs:A (2.55) BS03 CA ? GO:0001525 ... P08514 19111664
    140504 3fcs:A (2.55) BS04 CA ? GO:0001525 ... P08514 19111664
    140505 3fcs:A (2.55) BS05 CA ? GO:0001525 ... P08514 19111664
    140506 3fcs:B (2.55) BS01 MG ? GO:0001525 ... P05106 19111664
    140507 3fcs:B (2.55) BS02 CA ? GO:0001525 ... P05106 19111664
    140508 3fcs:B (2.55) BS03 CA ? GO:0001525 ... P05106 19111664
    140509 3fcs:C (2.55) BS01 CA ? GO:0001525 ... P08514 19111664
    140510 3fcs:C (2.55) BS02 CA ? GO:0001525 ... P08514 19111664
    140511 3fcs:C (2.55) BS03 CA ? GO:0001525 ... P08514 19111664
    140512 3fcs:C (2.55) BS04 CA ? GO:0001525 ... P08514 19111664
    140513 3fcs:C (2.55) BS05 CA ? GO:0001525 ... P08514 19111664
    140514 3fcs:D (2.55) BS01 MG ? GO:0001525 ... P05106 19111664
    140515 3fcs:D (2.55) BS02 CA ? GO:0001525 ... P05106 19111664
    140516 3fcs:D (2.55) BS03 CA ? GO:0001525 ... P05106 19111664
    140517 3fct:A (2.4) BS01 CA N/A N/A N/A 9772166
    140518 3fct:A (2.4) BS02 MMP N/A N/A N/A 9772166
    140519 3fct:B (2.4) BS01 MMP N/A N/A N/A 9772166
    140520 3fct:C (2.4) BS01 MMP N/A N/A N/A 9772166
    140521 3fct:D (2.4) BS01 MMP N/A N/A N/A 9772166
    140522 3fcu:A (2.9) BS01 CA ? GO:0007155 ... P08514 19111664
    140523 3fcu:A (2.9) BS02 CA ? GO:0007155 ... P08514 19111664
    140524 3fcu:A (2.9) BS03 CA ? GO:0007155 ... P08514 19111664
    140525 3fcu:A (2.9) BS04 CA ? GO:0007155 ... P08514 19111664
    140526 3fcu:B (2.9) BS01 MG ? N/A P05106 19111664
    140527 3fcu:B (2.9) BS02 CA ? N/A P05106 19111664
    140528 3fcu:B (2.9) BS03 CA ? N/A P05106 19111664
    140529 3fcu:C (2.9) BS01 CA ? GO:0007155 ... P08514 19111664
    140530 3fcu:C (2.9) BS02 CA ? GO:0007155 ... P08514 19111664
    140531 3fcu:C (2.9) BS03 CA ? GO:0007155 ... P08514 19111664
    140532 3fcu:C (2.9) BS04 CA ? GO:0007155 ... P08514 19111664
    140533 3fcu:D (2.9) BS01 MG ? N/A P05106 19111664
    140534 3fcu:D (2.9) BS02 CA ? N/A P05106 19111664
    140535 3fcu:D (2.9) BS03 CA ? N/A P05106 19111664
    140536 3fcu:E (2.9) BS01 CA ? GO:0007155 ... P08514 19111664
    140537 3fcu:E (2.9) BS02 CA ? GO:0007155 ... P08514 19111664
    140538 3fcu:E (2.9) BS03 CA ? GO:0007155 ... P08514 19111664
    140539 3fcu:E (2.9) BS04 CA ? GO:0007155 ... P08514 19111664
    140540 3fcu:F (2.9) BS01 MG ? N/A P05106 19111664
    140541 3fcu:F (2.9) BS02 CA ? N/A P05106 19111664
    140542 3fcu:F (2.9) BS03 CA ? N/A P05106 19111664
    140543 3fcw:A (2.4) BS01 UDP 2.7.4.6 GO:0000166 ... Q5UQL3 19439473
    140544 3fcw:B (2.4) BS01 UDP 2.7.4.6 GO:0000166 ... Q5UQL3 19439473
    140545 3fcw:C (2.4) BS01 UDP 2.7.4.6 GO:0000166 ... Q5UQL3 19439473
    140546 3fcw:D (2.4) BS01 UDP 2.7.4.6 GO:0000166 ... Q5UQL3 19439473
    140547 3fcw:E (2.4) BS01 UDP 2.7.4.6 GO:0000166 ... Q5UQL3 19439473
    140548 3fcw:F (2.4) BS01 UDP 2.7.4.6 GO:0000166 ... Q5UQL3 19439473
    140549 3fcx:A (1.5) BS01 MG 3.1.1.56
    3.1.2.12
    GO:0005515 ... P10768 19126594
    140550 3fcx:A (1.5) BS02 CA 3.1.1.56
    3.1.2.12
    GO:0005515 ... P10768 19126594
    140551 3fcx:B (1.5) BS01 CA 3.1.1.56
    3.1.2.12
    GO:0005515 ... P10768 19126594
    140552 3fcx:B (1.5) BS02 CA 3.1.1.56
    3.1.2.12
    GO:0005515 ... P10768 19126594
    140553 3fcy:A (2.1) BS01 CA 3.1.1.41'
    '3.1.1.72
    GO:0005976 ... O30361 N/A
    140554 3fcy:C (2.1) BS01 CA 3.1.1.41'
    '3.1.1.72
    GO:0005976 ... O30361 N/A
    140555 3fcz:A (2.804) BS01 ZN 3.5.2.6 GO:0008270 ... P04190 19098096
    140556 3fcz:A (2.804) BS02 ZN 3.5.2.6 GO:0008270 ... P04190 19098096
    140557 3fcz:B (2.804) BS01 ZN 3.5.2.6 GO:0008270 ... P04190 19098096
    140558 3fcz:B (2.804) BS02 ZN 3.5.2.6 GO:0008270 ... P04190 19098096
    140559 3fd2:A (2.69) BS01 dna 3.1.-.- GO:0004519 ... C0JWR6 19153140
    140560 3fd2:A (2.69) BS02 dna 3.1.-.- GO:0004519 ... C0JWR6 19153140
    140561 3fd2:A (2.69) BS03 CA 3.1.-.- GO:0004519 ... C0JWR6 19153140
    140562 3fd2:A (2.69) BS04 CA 3.1.-.- GO:0004519 ... C0JWR6 19153140
    140563 3fd3:A (1.7) BS01 CA ? N/A A9CJQ0 N/A
    140564 3fd5:A (1.9) BS01 AP2 2.7.9.3 GO:0004756 ... P49903 19477186
    140565 3fd5:A (1.9) BS02 PO4 2.7.9.3 GO:0004756 ... P49903 19477186
    140566 3fd5:A (1.9) BS03 MG 2.7.9.3 GO:0004756 ... P49903 19477186
    140567 3fd5:A (1.9) BS04 MG 2.7.9.3 GO:0004756 ... P49903 19477186
    140568 3fd5:A (1.9) BS05 K 2.7.9.3 GO:0004756 ... P49903 19477186
    140569 3fd5:A (1.9) BS06 AP2 2.7.9.3 GO:0004756 ... P49903 19477186
    140570 3fd5:B (1.9) BS01 AP2 2.7.9.3 GO:0004756 ... P49903 19477186
    140571 3fd5:B (1.9) BS02 AP2 2.7.9.3 GO:0004756 ... P49903 19477186
    140572 3fd5:B (1.9) BS03 PO4 2.7.9.3 GO:0004756 ... P49903 19477186
    140573 3fd5:B (1.9) BS04 MG 2.7.9.3 GO:0004756 ... P49903 19477186
    140574 3fd5:B (1.9) BS05 MG 2.7.9.3 GO:0004756 ... P49903 19477186
    140575 3fd5:B (1.9) BS06 K 2.7.9.3 GO:0004756 ... P49903 19477186
    140576 3fd6:A (1.95) BS01 ADP 2.7.9.3 GO:0004756 ... P49903 19477186
    140577 3fd6:A (1.95) BS02 PO4 2.7.9.3 GO:0004756 ... P49903 19477186
    140578 3fd6:A (1.95) BS03 MG 2.7.9.3 GO:0004756 ... P49903 19477186
    140579 3fd6:A (1.95) BS04 ADP 2.7.9.3 GO:0004756 ... P49903 19477186
    140580 3fd6:B (1.95) BS01 ADP 2.7.9.3 GO:0004756 ... P49903 19477186
    140581 3fd6:B (1.95) BS02 ADP 2.7.9.3 GO:0004756 ... P49903 19477186
    140582 3fd6:B (1.95) BS03 PO4 2.7.9.3 GO:0004756 ... P49903 19477186
    140583 3fd6:B (1.95) BS04 MG 2.7.9.3 GO:0004756 ... P49903 19477186
    140584 3fdc:A (3.1) BS01 BTF ? GO:0005576 ... P02701 19788194
    140585 3fdc:B (3.1) BS01 BTF ? GO:0005576 ... P02701 19788194
    140586 3fdd:A (2.35) BS01 PLP 2.6.1.- GO:0003824 ... Q845W8 19265705
    140587 3fde:A (1.41) BS01 dna 2.3.2.27 N/A Q8VDF2 19077538
    140588 3fde:A (1.41) BS02 dna 2.3.2.27 N/A Q8VDF2 19077538
    140589 3fde:B (1.41) BS01 dna 2.3.2.27 N/A Q8VDF2 19077538
    140590 3fde:B (1.41) BS02 dna 2.3.2.27 N/A Q8VDF2 19077538
    140591 3fdg:A (1.8) BS01 MG 3.4.13.19 GO:0006508 ... Q3IZQ3 N/A
    140592 3fdg:A (1.8) BS02 MG 3.4.13.19 GO:0006508 ... Q3IZQ3 N/A
    140593 3fdg:B (1.8) BS01 MG 3.4.13.19 GO:0006508 ... Q3IZQ3 N/A
    140594 3fdg:B (1.8) BS02 MG 3.4.13.19 GO:0006508 ... Q3IZQ3 N/A
    140595 3fdk:A (2.1) BS01 ZN ? GO:0008270 ... Q9RVU2 19159332
    140596 3fdk:A (2.1) BS02 ZN ? GO:0008270 ... Q9RVU2 19159332
    140597 3fdl:A (1.78) BS01 peptide ? GO:0042981 ... Q07817 19229915
    140598 3fdm:A (2.26) BS01 peptide ? GO:0042981 ... Q07817 19229915
    140599 3fdm:B (2.26) BS01 peptide ? GO:0042981 ... Q07817 19229915
    140600 3fdm:C (2.26) BS01 peptide ? GO:0042981 ... Q07817 19229915

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).