SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    143201 3g7f:L (2.5) BS07 BCB ? GO:0009772 ... P06009 19539602
    143202 3g7f:L (2.5) BS08 BPB ? GO:0009772 ... P06009 19539602
    143203 3g7f:M (2.5) BS01 BCB ? GO:0009772 ... P06010 19539602
    143204 3g7f:M (2.5) BS02 BPB ? GO:0009772 ... P06010 19539602
    143205 3g7f:M (2.5) BS03 FE2 ? GO:0009772 ... P06010 19539602
    143206 3g7f:M (2.5) BS04 MQ9 ? GO:0009772 ... P06010 19539602
    143207 3g7f:M (2.5) BS05 UQ1 ? GO:0009772 ... P06010 19539602
    143208 3g7f:M (2.5) BS06 BCB ? GO:0009772 ... P06010 19539602
    143209 3g7f:M (2.5) BS07 BPB ? GO:0009772 ... P06010 19539602
    143210 3g7f:M (2.5) BS08 BPB ? GO:0009772 ... P06010 19539602
    143211 3g7f:M (2.5) BS09 NS5 ? GO:0009772 ... P06010 19539602
    143212 3g7i:B (2.05) BS01 GSH 2.5.1.18 GO:0003824 ... Q9GN60 22475449
    143213 3g7j:A (2.2) BS01 GTX 2.5.1.18 GO:0003824 ... Q9GN60 20196771
    143214 3g7j:B (2.2) BS01 GTX 2.5.1.18 GO:0003824 ... Q9GN60 20196771
    143215 3g7l:A (2.2) BS01 peptide ? N/A Q10103 19362535
    143216 3g7v:A (1.86) BS01 GLC ? GO:0005179 ... P0AEX9
    P10997
    19475663
    143217 3g7v:A (1.86) BS02 GLC ? GO:0005179 ... P0AEX9
    P10997
    19475663
    143218 3g7v:B (1.86) BS01 GLC ? GO:0005179 ... P0AEX9
    P10997
    19475663
    143219 3g7v:B (1.86) BS02 GLC ? GO:0005179 ... P0AEX9
    P10997
    19475663
    143220 3g7v:C (1.86) BS01 GLC ? GO:0005179 ... P0AEX9
    P10997
    19475663
    143221 3g7v:C (1.86) BS02 GLC ? GO:0005179 ... P0AEX9
    P10997
    19475663
    143222 3g7v:D (1.86) BS01 GLC ? GO:0005179 ... P0AEX9
    P10997
    19475663
    143223 3g7v:D (1.86) BS02 GLC ? GO:0005179 ... P0AEX9
    P10997
    19475663
    143224 3g7w:A (1.75) BS01 GLC ? GO:0005179 ... P0AEX9
    P10997
    19475663
    143225 3g7w:A (1.75) BS02 GLC ? GO:0005179 ... P0AEX9
    P10997
    19475663
    143226 3g7w:A (1.75) BS03 GLC ? GO:0005179 ... P0AEX9
    P10997
    19475663
    143227 3g7x:A (1.55) BS01 HSM ? GO:0005576 ... O77421 N/A
    143228 3g7x:B (1.55) BS01 HSM ? GO:0005576 ... O77421 N/A
    143229 3g81:A (1.8) BS01 CA ? N/A P35247 19249874
    143230 3g81:A (1.8) BS02 CA ? N/A P35247 19249874
    143231 3g81:A (1.8) BS03 CA ? N/A P35247 19249874
    143232 3g81:A (1.8) BS04 MMA ? N/A P35247 19249874
    143233 3g81:B (1.8) BS01 CA ? N/A P35247 19249874
    143234 3g81:B (1.8) BS02 CA ? N/A P35247 19249874
    143235 3g81:B (1.8) BS03 CA ? N/A P35247 19249874
    143236 3g81:B (1.8) BS04 MMA ? N/A P35247 19249874
    143237 3g81:C (1.8) BS01 CA ? N/A P35247 19249874
    143238 3g81:C (1.8) BS02 CA ? N/A P35247 19249874
    143239 3g81:C (1.8) BS03 CA ? N/A P35247 19249874
    143240 3g81:C (1.8) BS04 MMA ? N/A P35247 19249874
    143241 3g82:A (3.11) BS01 MN 4.6.1.1 GO:0009190 ... P30803 N/A
    143242 3g82:A (3.11) BS02 MN 4.6.1.1 GO:0009190 ... P30803 N/A
    143243 3g82:A (3.11) BS03 FOK 4.6.1.1 GO:0009190 ... P30803 N/A
    143244 3g82:A (3.11) BS04 MI3 4.6.1.1 GO:0009190 ... P30803 N/A
    143245 3g82:B (3.11) BS01 FOK 4.6.1.1 GO:0009190 ... P26769 N/A
    143246 3g82:B (3.11) BS02 MI3 4.6.1.1 GO:0009190 ... P26769 N/A
    143247 3g82:C (3.11) BS01 MG ? GO:0003924 ... P04896 N/A
    143248 3g82:C (3.11) BS02 GSP ? GO:0003924 ... P04896 N/A
    143249 3g83:A (1.9) BS01 MAN ? N/A P35247 19249874
    143250 3g83:A (1.9) BS02 CA ? N/A P35247 19249874
    143251 3g83:A (1.9) BS03 CA ? N/A P35247 19249874
    143252 3g83:A (1.9) BS04 CA ? N/A P35247 19249874
    143253 3g83:B (1.9) BS01 MAN ? N/A P35247 19249874
    143254 3g83:B (1.9) BS02 MAN ? N/A P35247 19249874
    143255 3g83:B (1.9) BS03 CA ? N/A P35247 19249874
    143256 3g83:B (1.9) BS04 CA ? N/A P35247 19249874
    143257 3g83:B (1.9) BS05 CA ? N/A P35247 19249874
    143258 3g83:C (1.9) BS01 MAN ? N/A P35247 19249874
    143259 3g83:C (1.9) BS02 CA ? N/A P35247 19249874
    143260 3g83:C (1.9) BS03 CA ? N/A P35247 19249874
    143261 3g83:C (1.9) BS04 CA ? N/A P35247 19249874
    143262 3g84:A (2.3) BS01 MAN ? N/A P35247 19249874
    143263 3g84:A (2.3) BS02 MAN ? N/A P35247 19249874
    143264 3g84:A (2.3) BS03 CA ? N/A P35247 19249874
    143265 3g84:A (2.3) BS04 CA ? N/A P35247 19249874
    143266 3g84:A (2.3) BS05 CA ? N/A P35247 19249874
    143267 3g84:B (2.3) BS01 MAN ? N/A P35247 19249874
    143268 3g84:B (2.3) BS02 MAN ? N/A P35247 19249874
    143269 3g84:B (2.3) BS03 CA ? N/A P35247 19249874
    143270 3g84:B (2.3) BS04 CA ? N/A P35247 19249874
    143271 3g84:B (2.3) BS05 CA ? N/A P35247 19249874
    143272 3g84:C (2.3) BS01 MAN ? N/A P35247 19249874
    143273 3g84:C (2.3) BS02 MAN ? N/A P35247 19249874
    143274 3g84:C (2.3) BS03 CA ? N/A P35247 19249874
    143275 3g84:C (2.3) BS04 CA ? N/A P35247 19249874
    143276 3g84:C (2.3) BS05 CA ? N/A P35247 19249874
    143277 3g86:A (2.2) BS01 T18 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13
    GO:0003723 ... P26663 19457662 MOAD: ic50=0.005uM
    143278 3g86:B (2.2) BS01 T18 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13
    GO:0003723 ... P26663 19457662 MOAD: ic50=0.005uM
    143279 3g88:A (1.87) BS01 SAM 2.1.1.170 GO:0005737 ... Q9LCY2 19622680
    143280 3g88:B (1.87) BS01 SAM 2.1.1.170 GO:0005737 ... Q9LCY2 19622680
    143281 3g89:A (1.5) BS01 SAM 2.1.1.170 GO:0005737 ... Q9LCY2 19622680
    143282 3g89:A (1.5) BS02 AMP 2.1.1.170 GO:0005737 ... Q9LCY2 19622680
    143283 3g89:B (1.5) BS01 SAM 2.1.1.170 GO:0005737 ... Q9LCY2 19622680
    143284 3g89:B (1.5) BS02 AMP 2.1.1.170 GO:0005737 ... Q9LCY2 19622680
    143285 3g8a:A (2.1) BS01 SAH 2.1.1.170 GO:0005737 ... Q9LCY2 19622680
    143286 3g8a:B (2.1) BS01 SAH 2.1.1.170 GO:0005737 ... Q9LCY2 19622680
    143287 3g8a:C (2.1) BS01 SAH 2.1.1.170 GO:0005737 ... Q9LCY2 19622680
    143288 3g8a:D (2.1) BS01 SAH 2.1.1.170 GO:0005737 ... Q9LCY2 19622680
    143289 3g8a:E (2.1) BS01 SAH 2.1.1.170 GO:0005737 ... Q9LCY2 19622680
    143290 3g8a:F (2.1) BS01 SAH 2.1.1.170 GO:0005737 ... Q9LCY2 19622680
    143291 3g8b:A (2.1) BS01 SAM 2.1.1.170 GO:0005737 ... Q9LCY2 19622680
    143292 3g8b:B (2.1) BS01 SAM 2.1.1.170 GO:0005737 ... Q9LCY2 19622680
    143293 3g8c:A (2.0) BS01 ADP 6.3.4.14 GO:0003824 ... P24182 19213731
    143294 3g8c:A (2.0) BS02 MG 6.3.4.14 GO:0003824 ... P24182 19213731
    143295 3g8c:A (2.0) BS03 BTN 6.3.4.14 GO:0003824 ... P24182 19213731
    143296 3g8c:A (2.0) BS04 BCT 6.3.4.14 GO:0003824 ... P24182 19213731
    143297 3g8c:B (2.0) BS01 ADP 6.3.4.14 GO:0003824 ... P24182 19213731
    143298 3g8c:B (2.0) BS02 MG 6.3.4.14 GO:0003824 ... P24182 19213731
    143299 3g8c:B (2.0) BS03 BTN 6.3.4.14 GO:0003824 ... P24182 19213731
    143300 3g8c:B (2.0) BS04 BCT 6.3.4.14 GO:0003824 ... P24182 19213731
    143301 3g8d:B (1.9) BS01 ADP 6.3.4.14 GO:0003824 ... P24182 19213731
    143302 3g8e:A (3.0) BS01 IS1 2.4.2.12 GO:0000166 ... Q80Z29 19533035
    143303 3g8e:B (3.0) BS01 IS1 2.4.2.12 GO:0000166 ... Q80Z29 19533035
    143304 3g8e:B (3.0) BS02 IS1 2.4.2.12 GO:0000166 ... Q80Z29 19533035
    143305 3g8f:A (1.25) BS01 peptide 3.1.1.4 GO:0004623 ... P59071 N/A
    143306 3g8i:A (2.2) BS01 peptide ? GO:0003677 ... Q07869 19349176
    143307 3g8i:A (2.2) BS02 RO7 ? GO:0003677 ... Q07869 19349176 MOAD: ic50=0.038uM
    BindingDB: IC50=38nM, EC50=103nM
    143308 3g8m:A (3.3) BS01 PLP 2.1.2.1 GO:0003824 ... P0A825 19883126
    143309 3g8o:A (1.9) BS01 30X ? N/A P06401 19595590 MOAD: ic50=125nM
    BindingDB: IC50=125nM, EC50=1300nM
    143310 3g8o:B (1.9) BS01 30X ? N/A P06401 19595590 MOAD: ic50=125nM
    BindingDB: IC50=125nM, EC50=1300nM
    143311 3g8q:A (2.4) BS01 ZN 3.5.4.35 GO:0000049 ... Q8TWU6 19407206
    143312 3g8q:B (2.4) BS01 ZN 3.5.4.35 GO:0000049 ... Q8TWU6 19407206
    143313 3g8q:C (2.4) BS01 ZN 3.5.4.35 GO:0000049 ... Q8TWU6 19407206
    143314 3g8q:D (2.4) BS01 ZN 3.5.4.35 GO:0000049 ... Q8TWU6 19407206
    143315 3g8r:B (2.49) BS01 ZN ? GO:0016051 ... Q7NR94 N/A
    143316 3g8s:A (3.1) BS01 rna ? GO:0003676 ... P09012 19228039
    143317 3g8s:B (3.1) BS01 rna ? GO:0003676 ... P09012 19228039
    143318 3g8s:C (3.1) BS01 rna ? GO:0003676 ... P09012 19228039
    143319 3g8s:D (3.1) BS01 rna ? GO:0003676 ... P09012 19228039
    143320 3g8t:A (3.0) BS01 rna ? GO:0003676 ... P09012 19228039
    143321 3g8t:B (3.0) BS01 rna ? GO:0003676 ... P09012 19228039
    143322 3g8t:C (3.0) BS01 rna ? GO:0003676 ... P09012 19228039
    143323 3g8t:D (3.0) BS01 rna ? GO:0003676 ... P09012 19228039
    143324 3g8u:A (1.9) BS01 dna ? GO:0003700 ... P06536 19372434
    143325 3g8u:A (1.9) BS02 dna ? GO:0003700 ... P06536 19372434
    143326 3g8u:A (1.9) BS03 ZN ? GO:0003700 ... P06536 19372434
    143327 3g8u:A (1.9) BS04 ZN ? GO:0003700 ... P06536 19372434
    143328 3g8u:B (1.9) BS01 dna ? GO:0003700 ... P06536 19372434
    143329 3g8u:B (1.9) BS02 dna ? GO:0003700 ... P06536 19372434
    143330 3g8u:B (1.9) BS03 ZN ? GO:0003700 ... P06536 19372434
    143331 3g8u:B (1.9) BS04 ZN ? GO:0003700 ... P06536 19372434
    143332 3g8x:A (2.05) BS01 dna ? GO:0003700 ... P06536 19372434
    143333 3g8x:A (2.05) BS02 dna ? GO:0003700 ... P06536 19372434
    143334 3g8x:A (2.05) BS03 ZN ? GO:0003700 ... P06536 19372434
    143335 3g8x:A (2.05) BS04 ZN ? GO:0003700 ... P06536 19372434
    143336 3g8x:B (2.05) BS01 dna ? GO:0003700 ... P06536 19372434
    143337 3g8x:B (2.05) BS02 dna ? GO:0003700 ... P06536 19372434
    143338 3g8x:B (2.05) BS03 ZN ? GO:0003700 ... P06536 19372434
    143339 3g8x:B (2.05) BS04 ZN ? GO:0003700 ... P06536 19372434
    143340 3g90:X (2.4) BS01 J72 2.7.11.24 GO:0004672 ... P53779 19361991 MOAD: Ki=0.44uM
    143341 3g93:A (3.2) BS01 HEM 1.14.14.1 GO:0004497 ... P00178 19397311
    143342 3g93:A (3.2) BS02 PB2 1.14.14.1 GO:0004497 ... P00178 19397311
    143343 3g93:B (3.2) BS01 HEM 1.14.14.1 GO:0004497 ... P00178 19397311
    143344 3g93:B (3.2) BS02 PB2 1.14.14.1 GO:0004497 ... P00178 19397311
    143345 3g93:B (3.2) BS03 HEM 1.14.14.1 GO:0004497 ... P00178 19397311
    143346 3g93:C (3.2) BS01 HEM 1.14.14.1 GO:0004497 ... P00178 19397311
    143347 3g93:C (3.2) BS02 PB2 1.14.14.1 GO:0004497 ... P00178 19397311
    143348 3g93:D (3.2) BS01 HEM 1.14.14.1 GO:0004497 ... P00178 19397311
    143349 3g93:D (3.2) BS02 PB2 1.14.14.1 GO:0004497 ... P00178 19397311
    143350 3g96:A (3.01) BS01 rna ? GO:0003676 ... P09012 19228039
    143351 3g96:B (3.01) BS01 rna ? GO:0003676 ... P09012 19228039
    143352 3g96:C (3.01) BS01 rna ? GO:0003676 ... P09012 19228039
    143353 3g96:D (3.01) BS01 rna ? GO:0003676 ... P09012 19228039
    143354 3g97:A (2.08) BS01 dna ? GO:0003700 ... P06536 19372434
    143355 3g97:A (2.08) BS02 dna ? GO:0003700 ... P06536 19372434
    143356 3g97:A (2.08) BS03 ZN ? GO:0003700 ... P06536 19372434
    143357 3g97:A (2.08) BS04 ZN ? GO:0003700 ... P06536 19372434
    143358 3g97:B (2.08) BS01 dna ? GO:0003700 ... P06536 19372434
    143359 3g97:B (2.08) BS02 dna ? GO:0003700 ... P06536 19372434
    143360 3g97:B (2.08) BS03 ZN ? GO:0003700 ... P06536 19372434
    143361 3g97:B (2.08) BS04 ZN ? GO:0003700 ... P06536 19372434
    143362 3g99:A (1.81) BS01 dna ? GO:0003700 ... P06536 19372434
    143363 3g99:A (1.81) BS02 dna ? GO:0003700 ... P06536 19372434
    143364 3g99:A (1.81) BS03 ZN ? GO:0003700 ... P06536 19372434
    143365 3g99:A (1.81) BS04 ZN ? GO:0003700 ... P06536 19372434
    143366 3g99:B (1.81) BS01 dna ? GO:0003700 ... P06536 19372434
    143367 3g99:B (1.81) BS02 dna ? GO:0003700 ... P06536 19372434
    143368 3g99:B (1.81) BS03 ZN ? GO:0003700 ... P06536 19372434
    143369 3g99:B (1.81) BS04 ZN ? GO:0003700 ... P06536 19372434
    143370 3g9c:A (2.9) BS01 rna ? GO:0003676 ... P09012 19228039
    143371 3g9c:B (2.9) BS01 rna ? GO:0003676 ... P09012 19228039
    143372 3g9c:C (2.9) BS01 rna ? GO:0003676 ... P09012 19228039
    143373 3g9c:D (2.9) BS01 rna ? GO:0003676 ... P09012 19228039
    143374 3g9d:A (2.5) BS01 MG 3.2.2.24 GO:0047407 ... A7XNI2 19477184
    143375 3g9d:A (2.5) BS02 MG 3.2.2.24 GO:0047407 ... A7XNI2 19477184
    143376 3g9d:B (2.5) BS01 MG 3.2.2.24 GO:0047407 ... A7XNI2 19477184
    143377 3g9d:B (2.5) BS02 MG 3.2.2.24 GO:0047407 ... A7XNI2 19477184
    143378 3g9e:A (2.3) BS01 peptide ? GO:0003677 ... P37231 19349176
    143379 3g9e:A (2.3) BS02 RO7 ? GO:0003677 ... P37231 19349176 MOAD: ic50=0.019uM
    BindingDB: IC50=19nM, EC50=21nM
    143380 3g9i:A (1.85) BS01 dna ? GO:0003700 ... P06536 19372434
    143381 3g9i:A (1.85) BS02 dna ? GO:0003700 ... P06536 19372434
    143382 3g9i:A (1.85) BS03 ZN ? GO:0003700 ... P06536 19372434
    143383 3g9i:A (1.85) BS04 ZN ? GO:0003700 ... P06536 19372434
    143384 3g9i:B (1.85) BS01 dna ? GO:0003700 ... P06536 19372434
    143385 3g9i:B (1.85) BS02 dna ? GO:0003700 ... P06536 19372434
    143386 3g9i:B (1.85) BS03 ZN ? GO:0003700 ... P06536 19372434
    143387 3g9i:B (1.85) BS04 ZN ? GO:0003700 ... P06536 19372434
    143388 3g9j:A (2.32) BS01 dna ? GO:0003700 ... P06536 19372434
    143389 3g9j:A (2.32) BS02 dna ? GO:0003700 ... P06536 19372434
    143390 3g9j:A (2.32) BS03 ZN ? GO:0003700 ... P06536 19372434
    143391 3g9j:A (2.32) BS04 ZN ? GO:0003700 ... P06536 19372434
    143392 3g9j:B (2.32) BS01 dna ? GO:0003700 ... P06536 19372434
    143393 3g9j:B (2.32) BS02 dna ? GO:0003700 ... P06536 19372434
    143394 3g9j:B (2.32) BS03 ZN ? GO:0003700 ... P06536 19372434
    143395 3g9j:B (2.32) BS04 ZN ? GO:0003700 ... P06536 19372434
    143396 3g9k:S (1.79) BS01 GLU 2.3.2.- N/A Q51693 19535342
    143397 3g9k:S (1.79) BS02 GLU 2.3.2.- N/A Q51693 19535342
    143398 3g9l:X (2.2) BS01 J67 2.7.11.24 GO:0004672 ... P53779 19361991 MOAD: Ki=0.74uM
    BindingDB: Ki=740nM
    143399 3g9m:A (1.61) BS01 dna ? GO:0003700 ... P06536 19372434
    143400 3g9m:A (1.61) BS02 dna ? GO:0003700 ... P06536 19372434

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).