SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    144201 3gjr:C (2.2) BS01 DZE 3.4.22.56 GO:0004197 ... P42574 19283487
    144202 3gjr:D (2.2) BS01 DZE 3.4.22.56 GO:0004197 ... P42574 19283487
    144203 3gjs:A (1.9) BS01 peptide 3.4.22.56 GO:0004197 ... P42574 19283487
    144204 3gjs:B (1.9) BS01 peptide 3.4.22.56 GO:0004197 ... P42574 19283487
    144205 3gjs:C (1.9) BS01 peptide 3.4.22.56 GO:0004197 ... P42574 19283487
    144206 3gjs:D (1.9) BS01 peptide 3.4.22.56 GO:0004197 ... P42574 19283487
    144207 3gjt:A (2.2) BS01 peptide 3.4.22.56 GO:0004197 ... P42574 19283487
    144208 3gjt:B (2.2) BS01 peptide 3.4.22.56 GO:0004197 ... P42574 19283487
    144209 3gjt:C (2.2) BS01 peptide 3.4.22.56 GO:0004197 ... P42574 19283487
    144210 3gjt:D (2.2) BS01 peptide 3.4.22.56 GO:0004197 ... P42574 19283487
    144211 3gju:A (1.55) BS01 PLP ? GO:0005829 ... Q987B2 N/A
    144212 3gjw:A (2.3) BS01 GJW 2.4.2.-
    2.4.2.30
    GO:0003950 ... P09874 19553114 MOAD: Ki=0.005uM
    BindingDB: EC50=6nM, Ki=5nM
    144213 3gjx:C (2.5) BS01 GTP 3.6.5.- GO:0000054 ... P62826 19389996
    144214 3gjx:C (2.5) BS02 MG 3.6.5.- GO:0000054 ... P62826 19389996
    144215 3gjx:F (2.5) BS01 GTP 3.6.5.- GO:0000054 ... P62826 19389996
    144216 3gjx:F (2.5) BS02 MG 3.6.5.- GO:0000054 ... P62826 19389996
    144217 3gk0:A (2.28) BS01 DXP 2.6.99.2 GO:0005737 ... Q3JQ80 23382856
    144218 3gk0:C (2.28) BS01 DXP 2.6.99.2 GO:0005737 ... Q3JQ80 23382856
    144219 3gk0:D (2.28) BS01 DXP 2.6.99.2 GO:0005737 ... Q3JQ80 23382856
    144220 3gk0:F (2.28) BS01 DXP 2.6.99.2 GO:0005737 ... Q3JQ80 23382856
    144221 3gk0:G (2.28) BS01 DXP 2.6.99.2 GO:0005737 ... Q3JQ80 23382856
    144222 3gk0:H (2.28) BS01 DXP 2.6.99.2 GO:0005737 ... Q3JQ80 23382856
    144223 3gk1:A (2.1) BS01 CA ? GO:0001726 ... P02638 19469484
    144224 3gk1:A (2.1) BS02 CA ? GO:0001726 ... P02638 19469484
    144225 3gk1:A (2.1) BS03 32A ? GO:0001726 ... P02638 19469484 MOAD: Kd=80uM
    144226 3gk2:A (1.984) BS01 CA ? GO:0001726 ... P02638 19469484
    144227 3gk2:A (1.984) BS02 CA ? GO:0001726 ... P02638 19469484
    144228 3gk2:A (1.984) BS03 27A ? GO:0001726 ... P02638 19469484 MOAD: Kd=2mM
    144229 3gk4:X (1.9) BS01 CA ? GO:0001726 ... P02638 19469484
    144230 3gk4:X (1.9) BS02 CA ? GO:0001726 ... P02638 19469484
    144231 3gk4:X (1.9) BS03 53A ? GO:0001726 ... P02638 19469484 MOAD: Kd=120uM
    144232 3gk9:A (1.8) BS01 HEM 1.7.-.- GO:0001666 ... Q9ER97 19751675
    144233 3gka:A (2.3) BS01 FMN 1.-.-.- GO:0005829 ... Q3JFM9 N/A
    144234 3gka:B (2.3) BS01 FMN 1.-.-.- GO:0005829 ... Q3JFM9 N/A
    144235 3gke:A (1.75) BS01 FES 1.14.15.- GO:0003824 ... Q5S3I3 19616011
    144236 3gke:A (1.75) BS02 FE 1.14.15.- GO:0003824 ... Q5S3I3 19616011
    144237 3gke:B (1.75) BS01 FES 1.14.15.- GO:0003824 ... Q5S3I3 19616011
    144238 3gke:B (1.75) BS02 FE 1.14.15.- GO:0003824 ... Q5S3I3 19616011
    144239 3gke:B (1.75) BS03 OXY 1.14.15.- GO:0003824 ... Q5S3I3 19616011
    144240 3gke:C (1.75) BS01 FES 1.14.15.- GO:0003824 ... Q5S3I3 19616011
    144241 3gki:A (1.8) BS01 CLR ? N/A O15118 19563754
    144242 3gkj:A (1.6) BS01 HC3 ? N/A O15118 19563754
    144243 3gkl:A (2.2) BS01 ZN 3.1.-.- GO:0004519 ... Q47112 N/A
    144244 3gkn:A (1.47) BS01 BIH 1.11.1.24 GO:0005737 ... Q8P9V9 19477183
    144245 3gkn:B (1.47) BS01 BIH 1.11.1.24 GO:0005737 ... Q8P9V9 19477183
    144246 3gko:A (1.6) BS01 AZA 1.7.3.3 GO:0004846 ... Q00511 N/A
    144247 3gkq:A (2.1) BS01 FE2 ? GO:0003824 ... Q2PFA6 N/A
    144248 3gkq:A (2.1) BS02 FES ? GO:0003824 ... Q2PFA6 N/A
    144249 3gkq:A (2.1) BS03 FE2 ? GO:0003824 ... Q2PFA6 N/A
    144250 3gkq:B (2.1) BS01 FE2 ? GO:0003824 ... Q2PFA6 N/A
    144251 3gkq:B (2.1) BS02 FES ? GO:0003824 ... Q2PFA6 N/A
    144252 3gkq:B (2.1) BS03 FE2 ? GO:0003824 ... Q2PFA6 N/A
    144253 3gkq:C (2.1) BS01 FE2 ? GO:0003824 ... Q2PFA6 N/A
    144254 3gkq:C (2.1) BS02 FES ? GO:0003824 ... Q2PFA6 N/A
    144255 3gkq:C (2.1) BS03 FE2 ? GO:0003824 ... Q2PFA6 N/A
    144256 3gkq:D (2.1) BS01 FE2 ? GO:0003824 ... Q2PFA6 N/A
    144257 3gkq:D (2.1) BS02 FES ? GO:0003824 ... Q2PFA6 N/A
    144258 3gkq:D (2.1) BS03 FE2 ? GO:0003824 ... Q2PFA6 N/A
    144259 3gkq:E (2.1) BS01 FE2 ? GO:0003824 ... Q2PFA6 N/A
    144260 3gkq:E (2.1) BS02 FES ? GO:0003824 ... Q2PFA6 N/A
    144261 3gkq:E (2.1) BS03 FE2 ? GO:0003824 ... Q2PFA6 N/A
    144262 3gkq:F (2.1) BS01 FE2 ? GO:0003824 ... Q2PFA6 N/A
    144263 3gkq:F (2.1) BS02 FES ? GO:0003824 ... Q2PFA6 N/A
    144264 3gkq:F (2.1) BS03 FE2 ? GO:0003824 ... Q2PFA6 N/A
    144265 3gkr:A (1.6) BS01 peptide 2.3.2.10 GO:0009252 ... Q9EY50 N/A
    144266 3gkr:A (1.6) BS02 MG 2.3.2.10 GO:0009252 ... Q9EY50 N/A
    144267 3gkr:A (1.6) BS03 MG 2.3.2.10 GO:0009252 ... Q9EY50 N/A
    144268 3gkr:A (1.6) BS04 MG 2.3.2.10 GO:0009252 ... Q9EY50 N/A
    144269 3gkt:A (1.86) BS01 HEM 1.7.-.- GO:0001666 ... Q9ER97 19751675
    144270 3gkv:A (1.4) BS01 HEM ? GO:0004601 ... P80043 19373928
    144271 3gkv:B (1.4) BS01 HEM ? GO:0004601 ... P80044 19373928
    144272 3gky:B (1.8) BS01 peptide ? GO:0005179 ... P01315 19850922
    144273 3gky:D (1.8) BS01 peptide ? GO:0005179 ... P01315 19850922
    144274 3gkz:A (1.9) BS01 B40 N/A N/A N/A 19760665 MOAD: Kd=10nM
    144275 3gl0:A (1.75) BS01 FES 1.14.15.- GO:0003824 ... Q5S3I3 19616011
    144276 3gl0:A (1.75) BS02 FE 1.14.15.- GO:0003824 ... Q5S3I3 19616011
    144277 3gl0:A (1.75) BS03 HXX 1.14.15.- GO:0003824 ... Q5S3I3 19616011
    144278 3gl0:B (1.75) BS01 FES 1.14.15.- GO:0003824 ... Q5S3I3 19616011
    144279 3gl0:B (1.75) BS02 FE 1.14.15.- GO:0003824 ... Q5S3I3 19616011
    144280 3gl0:B (1.75) BS03 OXY 1.14.15.- GO:0003824 ... Q5S3I3 19616011
    144281 3gl0:B (1.75) BS04 HXX 1.14.15.- GO:0003824 ... Q5S3I3 19616011
    144282 3gl0:C (1.75) BS01 FES 1.14.15.- GO:0003824 ... Q5S3I3 19616011
    144283 3gl2:A (2.1) BS01 FES 1.14.15.- GO:0003824 ... Q5S3I3 19616011
    144284 3gl2:A (2.1) BS02 FE 1.14.15.- GO:0003824 ... Q5S3I3 19616011
    144285 3gl2:A (2.1) BS03 D3M 1.14.15.- GO:0003824 ... Q5S3I3 19616011
    144286 3gl2:B (2.1) BS01 FES 1.14.15.- GO:0003824 ... Q5S3I3 19616011
    144287 3gl2:B (2.1) BS02 FE 1.14.15.- GO:0003824 ... Q5S3I3 19616011
    144288 3gl2:B (2.1) BS03 D3M 1.14.15.- GO:0003824 ... Q5S3I3 19616011
    144289 3gl2:C (2.1) BS01 FES 1.14.15.- GO:0003824 ... Q5S3I3 19616011
    144290 3gl6:A (1.9) BS01 peptide 1.14.11.67 N/A P29375 19430464
    144291 3gl6:A (1.9) BS02 ZN 1.14.11.67 N/A P29375 19430464
    144292 3gl6:A (1.9) BS03 ZN 1.14.11.67 N/A P29375 19430464
    144293 3gl6:A (1.9) BS04 ZN 1.14.11.67 N/A P29375 19430464
    144294 3gl9:A (1.8) BS01 MG ? GO:0000156 ... Q9WYT9 19800110
    144295 3gl9:B (1.8) BS01 MG ? GO:0000156 ... Q9WYT9 19800110
    144296 3gl9:C (1.8) BS01 MG ? GO:0000156 ... Q9WYT9 19800110
    144297 3gl9:D (1.8) BS01 MG ? GO:0000156 ... Q9WYT9 19800110
    144298 3gla:A (1.64) BS01 PO4 N/A N/A N/A 16682772
    144299 3gla:A (1.64) BS02 PO4 N/A N/A N/A 16682772
    144300 3gla:B (1.64) BS01 PO4 N/A N/A N/A 16682772
    144301 3glb:A (2.8) BS01 CCU ? N/A P07774 19400783
    144302 3glb:B (2.8) BS01 CCU ? N/A P07774 19400783
    144303 3glb:C (2.8) BS01 CCU ? N/A P07774 19400783
    144304 3glb:D (2.8) BS01 CCU ? N/A P07774 19400783
    144305 3glc:A (2.5) BS01 R5P 2.3.1.245 GO:0004332 ... P76143 19714241
    144306 3glc:B (2.5) BS01 R5P 2.3.1.245 GO:0004332 ... P76143 19714241
    144307 3glc:C (2.5) BS01 R5P 2.3.1.245 GO:0004332 ... P76143 19714241
    144308 3glc:D (2.5) BS01 R5P 2.3.1.245 GO:0004332 ... P76143 19714241
    144309 3glc:E (2.5) BS01 R5P 2.3.1.245 GO:0004332 ... P76143 19714241
    144310 3glc:F (2.5) BS01 R5P 2.3.1.245 GO:0004332 ... P76143 19714241
    144311 3glc:G (2.5) BS01 R5P 2.3.1.245 GO:0004332 ... P76143 19714241
    144312 3glc:H (2.5) BS01 R5P 2.3.1.245 GO:0004332 ... P76143 19714241
    144313 3glc:I (2.5) BS01 R5P 2.3.1.245 GO:0004332 ... P76143 19714241
    144314 3glc:J (2.5) BS01 R5P 2.3.1.245 GO:0004332 ... P76143 19714241
    144315 3glc:K (2.5) BS01 R5P 2.3.1.245 GO:0004332 ... P76143 19714241
    144316 3glc:L (2.5) BS01 R5P 2.3.1.245 GO:0004332 ... P76143 19714241
    144317 3glc:M (2.5) BS01 R5P 2.3.1.245 GO:0004332 ... P76143 19714241
    144318 3glc:N (2.5) BS01 R5P 2.3.1.245 GO:0004332 ... P76143 19714241
    144319 3glc:O (2.5) BS01 R5P 2.3.1.245 GO:0004332 ... P76143 19714241
    144320 3glc:P (2.5) BS01 R5P 2.3.1.245 GO:0004332 ... P76143 19714241
    144321 3glc:Q (2.5) BS01 R5P 2.3.1.245 GO:0004332 ... P76143 19714241
    144322 3glc:R (2.5) BS01 R5P 2.3.1.245 GO:0004332 ... P76143 19714241
    144323 3glc:S (2.5) BS01 R5P 2.3.1.245 GO:0004332 ... P76143 19714241
    144324 3glc:T (2.5) BS01 R5P 2.3.1.245 GO:0004332 ... P76143 19714241
    144325 3glf:A (3.388) BS01 dna 2.7.7.7 GO:0003677 ... P28630 19450514
    144326 3glf:B (3.388) BS01 dna 2.7.7.7 GO:0003677 ... P06710 19450514
    144327 3glf:B (3.388) BS02 ADP 2.7.7.7 GO:0003677 ... P06710 19450514
    144328 3glf:B (3.388) BS03 BEF 2.7.7.7 GO:0003677 ... P06710 19450514
    144329 3glf:B (3.388) BS04 MG 2.7.7.7 GO:0003677 ... P06710 19450514
    144330 3glf:B (3.388) BS05 ZN 2.7.7.7 GO:0003677 ... P06710 19450514
    144331 3glf:C (3.388) BS01 dna 2.7.7.7 GO:0003677 ... P06710 19450514
    144332 3glf:C (3.388) BS02 ADP 2.7.7.7 GO:0003677 ... P06710 19450514
    144333 3glf:C (3.388) BS03 BEF 2.7.7.7 GO:0003677 ... P06710 19450514
    144334 3glf:C (3.388) BS04 ZN 2.7.7.7 GO:0003677 ... P06710 19450514
    144335 3glf:D (3.388) BS01 dna 2.7.7.7 GO:0003677 ... P06710 19450514
    144336 3glf:D (3.388) BS02 ADP 2.7.7.7 GO:0003677 ... P06710 19450514
    144337 3glf:D (3.388) BS03 BEF 2.7.7.7 GO:0003677 ... P06710 19450514
    144338 3glf:D (3.388) BS04 MG 2.7.7.7 GO:0003677 ... P06710 19450514
    144339 3glf:E (3.388) BS01 dna 2.7.7.7 GO:0003677 ... P28631 19450514
    144340 3glf:E (3.388) BS02 ZN 2.7.7.7 GO:0003677 ... P28631 19450514
    144341 3glf:F (3.388) BS01 dna 2.7.7.7 GO:0003677 ... P28630 19450514
    144342 3glf:G (3.388) BS01 dna 2.7.7.7 GO:0003677 ... P06710 19450514
    144343 3glf:G (3.388) BS02 ADP 2.7.7.7 GO:0003677 ... P06710 19450514
    144344 3glf:G (3.388) BS03 BEF 2.7.7.7 GO:0003677 ... P06710 19450514
    144345 3glf:G (3.388) BS04 MG 2.7.7.7 GO:0003677 ... P06710 19450514
    144346 3glf:G (3.388) BS05 ZN 2.7.7.7 GO:0003677 ... P06710 19450514
    144347 3glf:H (3.388) BS01 dna 2.7.7.7 GO:0003677 ... P06710 19450514
    144348 3glf:H (3.388) BS02 ADP 2.7.7.7 GO:0003677 ... P06710 19450514
    144349 3glf:H (3.388) BS03 BEF 2.7.7.7 GO:0003677 ... P06710 19450514
    144350 3glf:H (3.388) BS04 ZN 2.7.7.7 GO:0003677 ... P06710 19450514
    144351 3glf:I (3.388) BS01 dna 2.7.7.7 GO:0003677 ... P06710 19450514
    144352 3glf:I (3.388) BS02 ADP 2.7.7.7 GO:0003677 ... P06710 19450514
    144353 3glf:I (3.388) BS03 BEF 2.7.7.7 GO:0003677 ... P06710 19450514
    144354 3glf:J (3.388) BS01 dna 2.7.7.7 GO:0003677 ... P28631 19450514
    144355 3glf:J (3.388) BS02 ZN 2.7.7.7 GO:0003677 ... P28631 19450514
    144356 3glg:A (3.25) BS01 dna 2.7.7.7 GO:0003677 ... P28630 19450514
    144357 3glg:B (3.25) BS01 dna 2.7.7.7 GO:0003677 ... P06710 19450514
    144358 3glg:B (3.25) BS02 ADP 2.7.7.7 GO:0003677 ... P06710 19450514
    144359 3glg:B (3.25) BS03 BEF 2.7.7.7 GO:0003677 ... P06710 19450514
    144360 3glg:B (3.25) BS04 MG 2.7.7.7 GO:0003677 ... P06710 19450514
    144361 3glg:B (3.25) BS05 ZN 2.7.7.7 GO:0003677 ... P06710 19450514
    144362 3glg:C (3.25) BS01 dna 2.7.7.7 GO:0003677 ... P06710 19450514
    144363 3glg:C (3.25) BS02 ADP 2.7.7.7 GO:0003677 ... P06710 19450514
    144364 3glg:C (3.25) BS03 BEF 2.7.7.7 GO:0003677 ... P06710 19450514
    144365 3glg:C (3.25) BS04 ZN 2.7.7.7 GO:0003677 ... P06710 19450514
    144366 3glg:D (3.25) BS01 dna 2.7.7.7 GO:0003677 ... P06710 19450514
    144367 3glg:D (3.25) BS02 ADP 2.7.7.7 GO:0003677 ... P06710 19450514
    144368 3glg:D (3.25) BS03 BEF 2.7.7.7 GO:0003677 ... P06710 19450514
    144369 3glg:D (3.25) BS04 MG 2.7.7.7 GO:0003677 ... P06710 19450514
    144370 3glg:D (3.25) BS05 ZN 2.7.7.7 GO:0003677 ... P06710 19450514
    144371 3glg:E (3.25) BS01 dna 2.7.7.7 GO:0003677 ... P28631 19450514
    144372 3glg:E (3.25) BS02 ZN 2.7.7.7 GO:0003677 ... P28631 19450514
    144373 3glg:F (3.25) BS01 dna 2.7.7.7 GO:0003677 ... P28630 19450514
    144374 3glg:G (3.25) BS01 dna 2.7.7.7 GO:0003677 ... P06710 19450514
    144375 3glg:G (3.25) BS02 ADP 2.7.7.7 GO:0003677 ... P06710 19450514
    144376 3glg:G (3.25) BS03 BEF 2.7.7.7 GO:0003677 ... P06710 19450514
    144377 3glg:G (3.25) BS04 MG 2.7.7.7 GO:0003677 ... P06710 19450514
    144378 3glg:G (3.25) BS05 ZN 2.7.7.7 GO:0003677 ... P06710 19450514
    144379 3glg:H (3.25) BS01 dna 2.7.7.7 GO:0003677 ... P06710 19450514
    144380 3glg:H (3.25) BS02 ADP 2.7.7.7 GO:0003677 ... P06710 19450514
    144381 3glg:H (3.25) BS03 MG 2.7.7.7 GO:0003677 ... P06710 19450514
    144382 3glg:H (3.25) BS04 ZN 2.7.7.7 GO:0003677 ... P06710 19450514
    144383 3glg:H (3.25) BS05 BEF 2.7.7.7 GO:0003677 ... P06710 19450514
    144384 3glg:I (3.25) BS01 dna 2.7.7.7 GO:0003677 ... P06710 19450514
    144385 3glg:I (3.25) BS02 ADP 2.7.7.7 GO:0003677 ... P06710 19450514
    144386 3glg:I (3.25) BS03 BEF 2.7.7.7 GO:0003677 ... P06710 19450514
    144387 3glg:J (3.25) BS01 dna 2.7.7.7 GO:0003677 ... P28631 19450514
    144388 3glg:J (3.25) BS02 ZN 2.7.7.7 GO:0003677 ... P28631 19450514
    144389 3gli:A (3.5) BS01 dna 2.7.7.7 GO:0003677 ... P28630 19450514
    144390 3gli:B (3.5) BS01 dna 2.7.7.7 GO:0003677 ... P06710 19450514
    144391 3gli:B (3.5) BS02 peptide 2.7.7.7 GO:0003677 ... P06710 19450514
    144392 3gli:B (3.5) BS03 ADP 2.7.7.7 GO:0003677 ... P06710 19450514
    144393 3gli:B (3.5) BS04 BEF 2.7.7.7 GO:0003677 ... P06710 19450514
    144394 3gli:B (3.5) BS05 MG 2.7.7.7 GO:0003677 ... P06710 19450514
    144395 3gli:B (3.5) BS06 ZN 2.7.7.7 GO:0003677 ... P06710 19450514
    144396 3gli:C (3.5) BS01 dna 2.7.7.7 GO:0003677 ... P06710 19450514
    144397 3gli:C (3.5) BS02 peptide 2.7.7.7 GO:0003677 ... P06710 19450514
    144398 3gli:C (3.5) BS03 ADP 2.7.7.7 GO:0003677 ... P06710 19450514
    144399 3gli:C (3.5) BS04 BEF 2.7.7.7 GO:0003677 ... P06710 19450514
    144400 3gli:C (3.5) BS05 ZN 2.7.7.7 GO:0003677 ... P06710 19450514

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).