SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    145601 3gyf:A (1.7) BS01 51P 1.5.1.3 GO:0000900 ... P00374 19652333 MOAD: ic50=12.3nM
    BindingDB: IC50=1900nM
    145602 3gyf:A (1.7) BS02 NDP 1.5.1.3 GO:0000900 ... P00374 19652333
    145603 3gyg:A (2.45) BS01 MG 3.1.3.92 GO:0000287 ... O07565 N/A
    145604 3gyg:B (2.45) BS01 MG 3.1.3.92 GO:0000287 ... O07565 N/A
    145605 3gyg:C (2.45) BS01 MG 3.1.3.92 GO:0000287 ... O07565 N/A
    145606 3gyg:D (2.45) BS01 MG 3.1.3.92 GO:0000287 ... O07565 N/A
    145607 3gyh:X (2.8) BS01 dna ? GO:0003684 ... Q9UTN9 19516334
    145608 3gyh:X (2.8) BS02 dna ? GO:0003684 ... Q9UTN9 19516334
    145609 3gyh:X (2.8) BS03 PBO ? GO:0003684 ... Q9UTN9 19516334
    145610 3gyi:A (1.0) BS01 FAD 1.1.3.6
    5.3.3.1
    GO:0004769 ... P12676 19923719
    145611 3gyj:A (0.92) BS01 FAD 1.1.3.6
    5.3.3.1
    GO:0004769 ... P12676 19923719
    145612 3gyl:B (1.3) BS01 CA 3.4.21.- GO:0004252 ... Q16651 19388054
    145613 3gyn:A (2.15) BS01 B42 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13
    GO:0003723 ... P26663 19796938 MOAD: ic50=0.047uM
    145614 3gyn:B (2.15) BS01 B42 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13
    GO:0003723 ... P26663 19796938 MOAD: ic50=0.047uM
    145615 3gyq:A (2.45) BS01 SAM 2.1.1.230 GO:0003723 ... P18644 19369248
    145616 3gyq:B (2.45) BS01 SAM 2.1.1.230 GO:0003723 ... P18644 19369248
    145617 3gyq:B (2.45) BS02 SAM 2.1.1.230 GO:0003723 ... P18644 19369248
    145618 3gyr:A (2.3) BS01 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    145619 3gyr:A (2.3) BS02 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    145620 3gyr:A (2.3) BS03 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    145621 3gyr:B (2.3) BS01 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    145622 3gyr:B (2.3) BS02 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    145623 3gyr:B (2.3) BS03 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    145624 3gyr:C (2.3) BS01 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    145625 3gyr:C (2.3) BS02 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    145626 3gyr:C (2.3) BS03 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    145627 3gyr:D (2.3) BS01 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    145628 3gyr:D (2.3) BS02 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    145629 3gyr:D (2.3) BS03 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    145630 3gyr:E (2.3) BS01 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    145631 3gyr:E (2.3) BS02 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    145632 3gyr:E (2.3) BS03 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    145633 3gyr:F (2.3) BS01 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    145634 3gyr:F (2.3) BS02 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    145635 3gyr:F (2.3) BS03 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    145636 3gyr:G (2.3) BS01 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    145637 3gyr:G (2.3) BS02 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    145638 3gyr:G (2.3) BS03 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    145639 3gyr:H (2.3) BS01 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    145640 3gyr:H (2.3) BS02 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    145641 3gyr:H (2.3) BS03 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    145642 3gyr:I (2.3) BS01 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    145643 3gyr:I (2.3) BS02 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    145644 3gyr:I (2.3) BS03 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    145645 3gyr:J (2.3) BS01 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    145646 3gyr:J (2.3) BS02 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    145647 3gyr:J (2.3) BS03 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    145648 3gyr:K (2.3) BS01 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    145649 3gyr:K (2.3) BS02 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    145650 3gyr:K (2.3) BS03 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    145651 3gyr:L (2.3) BS01 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    145652 3gyr:L (2.3) BS02 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    145653 3gyr:L (2.3) BS03 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    145654 3gys:A (2.9) BS01 HEM ? GO:0005344 ... P07405 N/A
    145655 3gys:B (2.9) BS01 HEM ? GO:0005344 ... P07412 N/A
    145656 3gys:C (2.9) BS01 HEM ? GO:0005344 ... P07405 N/A
    145657 3gys:D (2.9) BS01 HEM ? GO:0005344 ... P07412 N/A
    145658 3gys:E (2.9) BS01 HEM ? GO:0005344 ... P07405 N/A
    145659 3gys:F (2.9) BS01 HEM ? GO:0005344 ... P07412 N/A
    145660 3gys:G (2.9) BS01 HEM ? GO:0005344 ... P07405 N/A
    145661 3gys:H (2.9) BS01 HEM ? GO:0005344 ... P07412 N/A
    145662 3gyt:A (2.4) BS01 peptide ? N/A Q9XZJ5 19497877
    145663 3gyt:A (2.4) BS02 DL4 ? N/A Q9XZJ5 19497877
    145664 3gyu:A (2.4) BS01 peptide ? N/A Q9XZJ5 19497877
    145665 3gyu:A (2.4) BS02 DL7 ? N/A Q9XZJ5 19497877
    145666 3gyv:A (3.0) BS01 IOD ? GO:0005634 ... Q8I608 19465776
    145667 3gyx:A (3.2) BS01 FAD 1.8.99.2 GO:0000104 ... T2G6Z9 19820092
    145668 3gyx:B (3.2) BS01 SF4 ? GO:0005515 ... T2G899 19820092
    145669 3gyx:B (3.2) BS02 SF4 ? GO:0005515 ... T2G899 19820092
    145670 3gyx:C (3.2) BS01 FAD 1.8.99.2 GO:0000104 ... T2G6Z9 19820092
    145671 3gyx:D (3.2) BS01 SF4 ? GO:0005515 ... T2G899 19820092
    145672 3gyx:D (3.2) BS02 SF4 ? GO:0005515 ... T2G899 19820092
    145673 3gyx:E (3.2) BS01 FAD 1.8.99.2 GO:0000104 ... T2G6Z9 19820092
    145674 3gyx:F (3.2) BS01 SF4 ? GO:0005515 ... T2G899 19820092
    145675 3gyx:F (3.2) BS02 SF4 ? GO:0005515 ... T2G899 19820092
    145676 3gyx:G (3.2) BS01 FAD 1.8.99.2 GO:0000104 ... T2G6Z9 19820092
    145677 3gyx:H (3.2) BS01 SF4 ? GO:0005515 ... T2G899 19820092
    145678 3gyx:H (3.2) BS02 SF4 ? GO:0005515 ... T2G899 19820092
    145679 3gyx:I (3.2) BS01 FAD 1.8.99.2 GO:0000104 ... T2G6Z9 19820092
    145680 3gyx:J (3.2) BS01 SF4 ? GO:0005515 ... T2G899 19820092
    145681 3gyx:J (3.2) BS02 SF4 ? GO:0005515 ... T2G899 19820092
    145682 3gyx:K (3.2) BS01 FAD 1.8.99.2 GO:0000104 ... T2G6Z9 19820092
    145683 3gyx:L (3.2) BS01 SF4 ? GO:0005515 ... T2G899 19820092
    145684 3gyx:L (3.2) BS02 SF4 ? GO:0005515 ... T2G899 19820092
    145685 3gyy:A (2.2) BS01 ZN ? GO:0055085 ... E1VBK1 22084072
    145686 3gyy:A (2.2) BS02 ZN ? GO:0055085 ... E1VBK1 22084072
    145687 3gyy:A (2.2) BS03 ZN ? GO:0055085 ... E1VBK1 22084072
    145688 3gyy:A (2.2) BS04 ZN ? GO:0055085 ... E1VBK1 22084072
    145689 3gyy:B (2.2) BS01 ZN ? GO:0055085 ... E1VBK1 22084072
    145690 3gyy:B (2.2) BS02 ZN ? GO:0055085 ... E1VBK1 22084072
    145691 3gyy:B (2.2) BS03 ZN ? GO:0055085 ... E1VBK1 22084072
    145692 3gyy:B (2.2) BS04 ZN ? GO:0055085 ... E1VBK1 22084072
    145693 3gyy:B (2.2) BS05 ZN ? GO:0055085 ... E1VBK1 22084072
    145694 3gyy:C (2.2) BS01 ZN ? GO:0055085 ... E1VBK1 22084072
    145695 3gyy:C (2.2) BS02 ZN ? GO:0055085 ... E1VBK1 22084072
    145696 3gyy:C (2.2) BS03 ZN ? GO:0055085 ... E1VBK1 22084072
    145697 3gyy:D (2.2) BS01 ZN ? GO:0055085 ... E1VBK1 22084072
    145698 3gyy:D (2.2) BS02 ZN ? GO:0055085 ... E1VBK1 22084072
    145699 3gyy:D (2.2) BS03 ZN ? GO:0055085 ... E1VBK1 22084072
    145700 3gz0:A (1.26) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 19583303
    145701 3gz1:A (2.15) BS01 peptide ? GO:0005515 ... P0A2U4 19478065
    145702 3gz1:B (2.15) BS01 peptide ? GO:0005515 ... P0A2U4 19478065
    145703 3gz2:B (2.65) BS01 peptide ? GO:0005515 ... P0A2U4 20937829
    145704 3gz3:A (1.9) BS01 FMN 1.3.98.1 GO:0004152 ... Q4QEW7 N/A
    145705 3gz3:B (1.9) BS01 FMN 1.3.98.1 GO:0004152 ... Q4QEW7 N/A
    145706 3gz4:A (2.1) BS01 NDP 1.-.-.- N/A A0A0H2V6Y9 N/A
    145707 3gz4:B (2.1) BS01 NDP 1.-.-.- N/A A0A0H2V6Y9 N/A
    145708 3gz6:A (2.901) BS01 dna ? GO:0003824 ... Q8EFJ3 19604474
    145709 3gz6:A (2.901) BS02 dna ? GO:0003824 ... Q8EFJ3 19604474
    145710 3gz6:B (2.901) BS01 dna ? GO:0003824 ... Q8EFJ3 19604474
    145711 3gz6:B (2.901) BS02 dna ? GO:0003824 ... Q8EFJ3 19604474
    145712 3gz8:A (2.43) BS01 APR ? N/A Q8EFJ3 19604474 MOAD: Kd=17.9uM
    145713 3gz8:A (2.43) BS02 APR ? N/A Q8EFJ3 19604474 MOAD: Kd=17.9uM
    145714 3gz8:B (2.43) BS01 APR ? N/A Q8EFJ3 19604474 MOAD: Kd=17.9uM
    145715 3gz8:B (2.43) BS02 APR ? N/A Q8EFJ3 19604474 MOAD: Kd=17.9uM
    145716 3gz8:C (2.43) BS01 APR ? N/A Q8EFJ3 19604474 MOAD: Kd=17.9uM
    145717 3gz8:C (2.43) BS02 APR ? N/A Q8EFJ3 19604474 MOAD: Kd=17.9uM
    145718 3gz8:D (2.43) BS01 APR ? N/A Q8EFJ3 19604474 MOAD: Kd=17.9uM
    145719 3gz8:D (2.43) BS02 APR ? N/A Q8EFJ3 19604474 MOAD: Kd=17.9uM
    145720 3gz9:A (2.0) BS01 B7G ? GO:0003677 ... Q03181 19464171
    145721 3gz9:A (2.0) BS02 D32 ? GO:0003677 ... Q03181 19464171 MOAD: Ki=0.004uM
    BindingDB: EC50=54nM, Ki=4nM
    145722 3gzc:A (2.1) BS01 PLR 4.4.1.16 GO:0005515 ... Q96I15 22295093
    145723 3gzc:B (2.1) BS01 PLR 4.4.1.16 GO:0005515 ... Q96I15 22295093
    145724 3gzd:A (1.8) BS01 PLR 4.4.1.16 GO:0005515 ... Q96I15 22295093
    145725 3gzd:A (1.8) BS02 PLR 4.4.1.16 GO:0005515 ... Q96I15 22295093
    145726 3gzd:B (1.8) BS01 PLR 4.4.1.16 GO:0005515 ... Q96I15 22295093
    145727 3gzd:C (1.8) BS01 PLR 4.4.1.16 GO:0005515 ... Q96I15 22295093
    145728 3gzd:D (1.8) BS01 PLR 4.4.1.16 GO:0005515 ... Q96I15 22295093
    145729 3gze:A (1.98) BS01 peptide 1.14.11.2 GO:0005506 ... A8J7D3 19553701
    145730 3gze:A (1.98) BS02 ZN 1.14.11.2 GO:0005506 ... A8J7D3 19553701
    145731 3gze:A (1.98) BS03 ZN 1.14.11.2 GO:0005506 ... A8J7D3 19553701
    145732 3gze:A (1.98) BS04 ZN 1.14.11.2 GO:0005506 ... A8J7D3 19553701
    145733 3gze:A (1.98) BS05 ZN 1.14.11.2 GO:0005506 ... A8J7D3 19553701
    145734 3gze:B (1.98) BS01 ZN 1.14.11.2 GO:0005506 ... A8J7D3 19553701
    145735 3gze:B (1.98) BS02 ZN 1.14.11.2 GO:0005506 ... A8J7D3 19553701
    145736 3gze:C (1.98) BS01 peptide 1.14.11.2 GO:0005506 ... A8J7D3 19553701
    145737 3gze:C (1.98) BS02 ZN 1.14.11.2 GO:0005506 ... A8J7D3 19553701
    145738 3gze:C (1.98) BS03 ZN 1.14.11.2 GO:0005506 ... A8J7D3 19553701
    145739 3gze:C (1.98) BS04 ZN 1.14.11.2 GO:0005506 ... A8J7D3 19553701
    145740 3gze:D (1.98) BS01 ZN 1.14.11.2 GO:0005506 ... A8J7D3 19553701
    145741 3gze:D (1.98) BS02 ZN 1.14.11.2 GO:0005506 ... A8J7D3 19553701
    145742 3gzg:A (1.55) BS01 MOO ? GO:0015689 ... Q8PHA1 N/A
    145743 3gzg:B (1.55) BS01 MOO ? GO:0015689 ... Q8PHA1 N/A
    145744 3gzg:C (1.55) BS01 MOO ? GO:0015689 ... Q8PHA1 N/A
    145745 3gzh:A (1.9) BS01 PO4 4.3.2.2 GO:0003824 ... Q8X737 19724117
    145746 3gzh:A (1.9) BS02 PO4 4.3.2.2 GO:0003824 ... Q8X737 19724117
    145747 3gzj:A (2.19) BS01 EVS 3.1.1.78 GO:0009694 ... Q9SE93 19496101
    145748 3gzj:B (2.19) BS01 EVS 3.1.1.78 GO:0009694 ... Q9SE93 19496101
    145749 3gzj:C (2.19) BS01 EVS 3.1.1.78 GO:0009694 ... Q9SE93 19496101
    145750 3gzj:D (2.19) BS01 EVS 3.1.1.78 GO:0009694 ... Q9SE93 19496101
    145751 3gzk:A (1.8) BS01 CA 3.2.1.4 GO:0004553 ... Q9AJS0 19729024
    145752 3gzk:A (1.8) BS02 ZN 3.2.1.4 GO:0004553 ... Q9AJS0 19729024
    145753 3gzl:A (2.55) BS01 PNS ? GO:0006633 ... O77077 19768685
    145754 3gzm:B (1.8) BS01 PNS ? GO:0006633 ... O77077 19768685
    145755 3gzn:B (3.0) BS01 ZN 6.2.1.64 GO:0005515 ... Q8TBC4 20129059
    145756 3gzn:B (3.0) BS02 B39 6.2.1.64 GO:0005515 ... Q8TBC4 20129059 BindingDB: IC50=5.0nM
    145757 3gzn:D (3.0) BS01 ZN 6.2.1.64 GO:0005515 ... Q8TBC4 20129059
    145758 3gzn:D (3.0) BS02 B39 6.2.1.64 GO:0005515 ... Q8TBC4 20129059 BindingDB: IC50=5.0nM
    145759 3gzo:A (2.1) BS01 CU 1.15.1.1 GO:0000303 ... P00441 19800308
    145760 3gzo:A (2.1) BS02 ZN 1.15.1.1 GO:0000303 ... P00441 19800308
    145761 3gzo:B (2.1) BS01 CU 1.15.1.1 GO:0000303 ... P00441 19800308
    145762 3gzo:B (2.1) BS02 ZN 1.15.1.1 GO:0000303 ... P00441 19800308
    145763 3gzo:C (2.1) BS01 CU 1.15.1.1 GO:0000303 ... P00441 19800308
    145764 3gzo:C (2.1) BS02 ZN 1.15.1.1 GO:0000303 ... P00441 19800308
    145765 3gzo:D (2.1) BS01 CU 1.15.1.1 GO:0000303 ... P00441 19800308
    145766 3gzo:D (2.1) BS02 ZN 1.15.1.1 GO:0000303 ... P00441 19800308
    145767 3gzo:E (2.1) BS01 CU 1.15.1.1 GO:0000303 ... P00441 19800308
    145768 3gzo:E (2.1) BS02 ZN 1.15.1.1 GO:0000303 ... P00441 19800308
    145769 3gzo:F (2.1) BS01 CU 1.15.1.1 GO:0000303 ... P00441 19800308
    145770 3gzo:F (2.1) BS02 ZN 1.15.1.1 GO:0000303 ... P00441 19800308
    145771 3gzo:G (2.1) BS01 CU 1.15.1.1 GO:0000303 ... P00441 19800308
    145772 3gzo:G (2.1) BS02 ZN 1.15.1.1 GO:0000303 ... P00441 19800308
    145773 3gzo:H (2.1) BS01 CU 1.15.1.1 GO:0000303 ... P00441 19800308
    145774 3gzo:H (2.1) BS02 ZN 1.15.1.1 GO:0000303 ... P00441 19800308
    145775 3gzo:I (2.1) BS01 CU 1.15.1.1 GO:0000303 ... P00441 19800308
    145776 3gzo:I (2.1) BS02 ZN 1.15.1.1 GO:0000303 ... P00441 19800308
    145777 3gzo:J (2.1) BS01 CU 1.15.1.1 GO:0000303 ... P00441 19800308
    145778 3gzo:J (2.1) BS02 ZN 1.15.1.1 GO:0000303 ... P00441 19800308
    145779 3gzt:B (3.8) BS01 CA ? GO:0019028 ... P12476 19487668
    145780 3gzt:B (3.8) BS02 CA ? GO:0019028 ... P12476 19487668
    145781 3gzt:F (3.8) BS01 CA ? GO:0019028 ... P12476 19487668
    145782 3gzt:F (3.8) BS02 CA ? GO:0019028 ... P12476 19487668
    145783 3gzt:G (3.8) BS01 CA ? GO:0019028 ... P12476 19487668
    145784 3gzt:G (3.8) BS02 CA ? GO:0019028 ... P12476 19487668
    145785 3gzt:H (3.8) BS01 CA ? GO:0019028 ... P12476 19487668
    145786 3gzt:H (3.8) BS02 CA ? GO:0019028 ... P12476 19487668
    145787 3gzt:I (3.8) BS01 CA ? GO:0019028 ... P12476 19487668
    145788 3gzt:I (3.8) BS02 CA ? GO:0019028 ... P12476 19487668
    145789 3gzt:J (3.8) BS01 CA ? GO:0019028 ... P12476 19487668
    145790 3gzt:J (3.8) BS02 CA ? GO:0019028 ... P12476 19487668
    145791 3gzt:K (3.8) BS01 CA ? GO:0019028 ... P12476 19487668
    145792 3gzt:K (3.8) BS02 CA ? GO:0019028 ... P12476 19487668
    145793 3gzt:L (3.8) BS01 CA ? GO:0019028 ... P12476 19487668
    145794 3gzt:L (3.8) BS02 CA ? GO:0019028 ... P12476 19487668
    145795 3gzt:M (3.8) BS01 CA ? GO:0019028 ... P12476 19487668
    145796 3gzt:M (3.8) BS02 CA ? GO:0019028 ... P12476 19487668
    145797 3gzt:N (3.8) BS01 CA ? GO:0019028 ... P12476 19487668
    145798 3gzt:N (3.8) BS02 CA ? GO:0019028 ... P12476 19487668
    145799 3gzt:O (3.8) BS01 CA ? GO:0019028 ... P12476 19487668
    145800 3gzt:O (3.8) BS02 CA ? GO:0019028 ... P12476 19487668

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).