SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    148401 3hs9:A (2.15) BS01 peptide ? GO:0006886 ... P62944 20160082
    148402 3hsb:A (2.2) BS01 rna ? GO:0003723 ... O31796 22053080
    148403 3hsb:B (2.2) BS01 rna ? GO:0003723 ... O31796 22053080
    148404 3hsb:C (2.2) BS01 rna ? GO:0003723 ... O31796 22053080
    148405 3hsb:D (2.2) BS01 rna ? GO:0003723 ... O31796 22053080
    148406 3hsb:F (2.2) BS01 rna ? GO:0003723 ... O31796 22053080
    148407 3hsc:A (1.93) BS01 ADP 3.6.4.10 GO:0005524 ... P19120 2143562
    148408 3hsd:A (1.652) BS01 MG 2.7.6.3 GO:0000287 ... P26281 N/A
    148409 3hsd:A (1.652) BS02 MG 2.7.6.3 GO:0000287 ... P26281 N/A
    148410 3hsd:B (1.652) BS01 MG 2.7.6.3 GO:0000287 ... P26281 N/A
    148411 3hsd:B (1.652) BS02 MG 2.7.6.3 GO:0000287 ... P26281 N/A
    148412 3hsg:A (1.14) BS01 MG 2.7.6.3 GO:0000287 ... P26281 N/A
    148413 3hsg:A (1.14) BS02 MG 2.7.6.3 GO:0000287 ... P26281 N/A
    148414 3hsg:A (1.14) BS03 APC 2.7.6.3 GO:0000287 ... P26281 N/A
    148415 3hsk:A (2.2) BS01 NAP 1.2.1.11 GO:0004073 ... Q5ALM0 20124701
    148416 3hsn:A (1.91) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 19791770
    148417 3hsn:A (1.91) BS02 H4B 1.14.13.39 GO:0004517 ... P29476 19791770
    148418 3hsn:A (1.91) BS03 HAR 1.14.13.39 GO:0004517 ... P29476 19791770
    148419 3hsn:A (1.91) BS04 ZN 1.14.13.39 GO:0004517 ... P29476 19791770
    148420 3hsn:A (1.91) BS05 H4B 1.14.13.39 GO:0004517 ... P29476 19791770
    148421 3hsn:B (1.91) BS01 H4B 1.14.13.39 GO:0004517 ... P29476 19791770
    148422 3hsn:B (1.91) BS02 ZN 1.14.13.39 GO:0004517 ... P29476 19791770
    148423 3hsn:B (1.91) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 19791770
    148424 3hsn:B (1.91) BS04 H4B 1.14.13.39 GO:0004517 ... P29476 19791770
    148425 3hsn:B (1.91) BS05 HAR 1.14.13.39 GO:0004517 ... P29476 19791770
    148426 3hso:A (2.02) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 19791770
    148427 3hso:A (2.02) BS02 H4B 1.14.13.39 GO:0004517 ... P29476 19791770
    148428 3hso:A (2.02) BS03 HAR 1.14.13.39 GO:0004517 ... P29476 19791770
    148429 3hso:A (2.02) BS04 ZN 1.14.13.39 GO:0004517 ... P29476 19791770
    148430 3hso:B (2.02) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 19791770
    148431 3hso:B (2.02) BS02 H4B 1.14.13.39 GO:0004517 ... P29476 19791770
    148432 3hso:B (2.02) BS03 HAR 1.14.13.39 GO:0004517 ... P29476 19791770
    148433 3hsp:A (2.2) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 19791770
    148434 3hsp:A (2.2) BS02 H4B 1.14.13.39 GO:0004517 ... P29476 19791770
    148435 3hsp:A (2.2) BS03 HAR 1.14.13.39 GO:0004517 ... P29476 19791770
    148436 3hsp:A (2.2) BS04 ZN 1.14.13.39 GO:0004517 ... P29476 19791770
    148437 3hsp:A (2.2) BS05 H4B 1.14.13.39 GO:0004517 ... P29476 19791770
    148438 3hsp:B (2.2) BS01 H4B 1.14.13.39 GO:0004517 ... P29476 19791770
    148439 3hsp:B (2.2) BS02 HEM 1.14.13.39 GO:0004517 ... P29476 19791770
    148440 3hsp:B (2.2) BS03 H4B 1.14.13.39 GO:0004517 ... P29476 19791770
    148441 3hsp:B (2.2) BS04 HAR 1.14.13.39 GO:0004517 ... P29476 19791770
    148442 3hsr:A (1.9) BS01 BT6 ? GO:0003700 ... A0A0H3KA72 19586910
    148443 3hsr:B (1.9) BS01 BT6 ? GO:0003700 ... A0A0H3KA72 19586910
    148444 3hsr:C (1.9) BS01 BT6 ? GO:0003700 ... A0A0H3KA72 19586910
    148445 3hsr:C (1.9) BS02 BT6 ? GO:0003700 ... A0A0H3KA72 19586910
    148446 3hsr:D (1.9) BS01 BT6 ? GO:0003700 ... A0A0H3KA72 19586910
    148447 3hsr:D (1.9) BS02 BT6 ? GO:0003700 ... A0A0H3KA72 19586910
    148448 3hst:A (2.25) BS01 GLC ? GO:0005515 ... P0AEX9 20363939
    148449 3hst:A (2.25) BS02 GLC ? GO:0005515 ... P0AEX9 20363939
    148450 3hst:A (2.25) BS03 GLC ? GO:0005515 ... P0AEX9 20363939
    148451 3hst:C (2.25) BS01 GLC ? GO:0005515 ... P0AEX9 20363939
    148452 3hst:C (2.25) BS02 GLC ? GO:0005515 ... P0AEX9 20363939
    148453 3hst:C (2.25) BS03 GLC ? GO:0005515 ... P0AEX9 20363939
    148454 3hsu:A (1.69) BS01 FAD 1.1.3.- GO:0005576 ... Q6PW77 18768475
    148455 3hsu:A (1.69) BS02 ZN 1.1.3.- GO:0005576 ... Q6PW77 18768475
    148456 3hsv:A (1.43) BS01 peptide ? N/A Q5NVK7 19818708
    148457 3hsv:A (1.43) BS02 ZN ? N/A Q5NVK7 19818708
    148458 3hsv:B (1.43) BS01 peptide ? N/A Q5NVK7 19818708
    148459 3hsv:B (1.43) BS02 ZN ? N/A Q5NVK7 19818708
    148460 3hsw:A (2.5) BS01 CA 3.1.1.4 GO:0002446 ... P00592 N/A
    148461 3hsw:A (2.5) BS02 CA 3.1.1.4 GO:0002446 ... P00592 N/A
    148462 3ht0:A (1.4) BS01 MG 2.7.6.3 GO:0000287 ... P26281 N/A
    148463 3ht0:A (1.4) BS02 MG 2.7.6.3 GO:0000287 ... P26281 N/A
    148464 3ht0:A (1.4) BS03 APC 2.7.6.3 GO:0000287 ... P26281 N/A
    148465 3ht2:A (2.0) BS01 ZN ? N/A Q70DX5 19665022
    148466 3ht2:C (2.0) BS01 ZN ? N/A Q70DX5 19665022
    148467 3ht3:A (1.7) BS01 dna 2.7.7.7 GO:0003676 ... D9N168 21454515
    148468 3ht3:A (1.7) BS02 dna 2.7.7.7 GO:0003676 ... D9N168 21454515
    148469 3ht3:A (1.7) BS03 GLC 2.7.7.7 GO:0003676 ... D9N168 21454515
    148470 3ht3:A (1.7) BS04 FRU 2.7.7.7 GO:0003676 ... D9N168 21454515
    148471 3ht3:A (1.7) BS05 DCP 2.7.7.7 GO:0003676 ... D9N168 21454515
    148472 3ht3:A (1.7) BS06 DCP 2.7.7.7 GO:0003676 ... D9N168 21454515
    148473 3ht3:D (1.7) BS01 dna 2.7.7.7 GO:0003676 ... D9N168 21454515
    148474 3ht3:D (1.7) BS02 dna 2.7.7.7 GO:0003676 ... D9N168 21454515
    148475 3ht3:D (1.7) BS03 GLC 2.7.7.7 GO:0003676 ... D9N168 21454515
    148476 3ht3:D (1.7) BS04 FRU 2.7.7.7 GO:0003676 ... D9N168 21454515
    148477 3ht3:D (1.7) BS05 GLC 2.7.7.7 GO:0003676 ... D9N168 21454515
    148478 3ht3:D (1.7) BS06 FRU 2.7.7.7 GO:0003676 ... D9N168 21454515
    148479 3ht3:D (1.7) BS07 DCP 2.7.7.7 GO:0003676 ... D9N168 21454515
    148480 3ht5:A (1.9) BS01 PMP 2.6.1.42 GO:0003824 ... P9WQ75 19923721
    148481 3ht6:A (1.59) BS01 JZ0 3.2.1.17 GO:0003796 ... P00720 19782087 MOAD: Kd=0.36mM
    148482 3ht7:A (1.7) BS01 JZ1 3.2.1.17 GO:0003796 ... P00720 19782087 MOAD: Kd=0.28mM
    148483 3ht8:A (1.6) BS01 JZ2 3.2.1.17 GO:0003796 ... P00720 19782087 MOAD: Kd=0.12mM
    148484 3ht9:A (2.02) BS01 JZ3 3.2.1.17 GO:0003796 ... P00720 19782087
    148485 3htb:A (1.81) BS01 JZ4 3.2.1.17 GO:0003796 ... P00720 19782087 MOAD: Kd=73.9uM
    148486 3htd:A (1.4) BS01 JZ5 3.2.1.17 GO:0003796 ... P00720 19782087
    148487 3htf:A (1.85) BS01 JZ6 3.2.1.17 GO:0003796 ... P00720 19782087
    148488 3htf:A (1.85) BS02 JZ6 3.2.1.17 GO:0003796 ... P00720 19782087
    148489 3htg:A (1.26) BS01 JZ7 3.2.1.17 GO:0003796 ... P00720 19782087
    148490 3hth:A (2.7) BS01 PRL ? GO:0000976 ... Q79SH7 N/A
    148491 3hth:B (2.7) BS01 PRL ? GO:0000976 ... Q79SH7 N/A
    148492 3hti:A (2.5) BS01 MGR ? GO:0000976 ... Q79SH7 N/A
    148493 3htj:A (2.7) BS01 ET ? GO:0000976 ... Q79SH7 N/A
    148494 3htj:B (2.7) BS01 ET ? GO:0000976 ... Q79SH7 N/A
    148495 3htk:C (2.31) BS01 ZN 2.3.2.- GO:0000724 ... P38632 19748359
    148496 3htl:X (1.8) BS01 CA ? N/A Q6NF81 19805181
    148497 3htn:B (1.5) BS01 FE ? N/A Q8A8Q1 N/A
    148498 3htp:A (2.96) BS01 SIA ? GO:0019031 ... C7C6F1 19628241
    148499 3htq:A (2.955) BS01 SIA ? GO:0019031 ... C7C6F1 19628241
    148500 3htr:A (2.06) BS01 ZN ? N/A Q6N0K4 N/A
    148501 3htr:B (2.06) BS01 ZN ? N/A Q6N0K4 N/A
    148502 3hts:B (1.75) BS01 dna ? GO:0003700 ... P22121 10331875
    148503 3htt:A (2.95) BS01 SIA ? GO:0019031 ... C7C6F1 19628241
    148504 3htw:A (1.9) BS01 CO ? GO:0008270 ... Q9RVU2 19631223
    148505 3htw:A (1.9) BS02 CO ? GO:0008270 ... Q9RVU2 19631223
    148506 3htw:A (1.9) BS03 MG ? GO:0008270 ... Q9RVU2 19631223
    148507 3htx:A (3.1) BS01 rna 2.1.1.386 GO:0001510 ... Q9C5Q8 19812675
    148508 3htx:A (3.1) BS02 rna 2.1.1.386 GO:0001510 ... Q9C5Q8 19812675
    148509 3htx:A (3.1) BS03 MG 2.1.1.386 GO:0001510 ... Q9C5Q8 19812675
    148510 3htx:A (3.1) BS04 SAH 2.1.1.386 GO:0001510 ... Q9C5Q8 19812675
    148511 3htx:D (3.1) BS01 rna 2.1.1.386 GO:0001510 ... Q9C5Q8 19812675
    148512 3htx:D (3.1) BS02 rna 2.1.1.386 GO:0001510 ... Q9C5Q8 19812675
    148513 3htx:D (3.1) BS03 MG 2.1.1.386 GO:0001510 ... Q9C5Q8 19812675
    148514 3htx:D (3.1) BS04 SAH 2.1.1.386 GO:0001510 ... Q9C5Q8 19812675
    148515 3hu1:A (2.81) BS01 AGS 3.6.4.6 GO:0005524 ... P55072 20512113
    148516 3hu1:A (2.81) BS02 AGS 3.6.4.6 GO:0005524 ... P55072 20512113
    148517 3hu1:B (2.81) BS01 AGS 3.6.4.6 GO:0005524 ... P55072 20512113
    148518 3hu1:B (2.81) BS02 AGS 3.6.4.6 GO:0005524 ... P55072 20512113
    148519 3hu1:C (2.81) BS01 AGS 3.6.4.6 GO:0005524 ... P55072 20512113
    148520 3hu1:C (2.81) BS02 AGS 3.6.4.6 GO:0005524 ... P55072 20512113
    148521 3hu1:D (2.81) BS01 AGS 3.6.4.6 GO:0005524 ... P55072 20512113
    148522 3hu1:D (2.81) BS02 AGS 3.6.4.6 GO:0005524 ... P55072 20512113
    148523 3hu1:E (2.81) BS01 AGS 3.6.4.6 GO:0005524 ... P55072 20512113
    148524 3hu1:E (2.81) BS02 AGS 3.6.4.6 GO:0005524 ... P55072 20512113
    148525 3hu1:F (2.81) BS01 AGS 3.6.4.6 GO:0005524 ... P55072 20512113
    148526 3hu1:F (2.81) BS02 AGS 3.6.4.6 GO:0005524 ... P55072 20512113
    148527 3hu2:A (2.85) BS01 AGS 3.6.4.6 GO:0005524 ... P55072 20512113
    148528 3hu2:A (2.85) BS02 AGS 3.6.4.6 GO:0005524 ... P55072 20512113
    148529 3hu2:B (2.85) BS01 AGS 3.6.4.6 GO:0005524 ... P55072 20512113
    148530 3hu2:B (2.85) BS02 AGS 3.6.4.6 GO:0005524 ... P55072 20512113
    148531 3hu2:C (2.85) BS01 AGS 3.6.4.6 GO:0005524 ... P55072 20512113
    148532 3hu2:C (2.85) BS02 AGS 3.6.4.6 GO:0005524 ... P55072 20512113
    148533 3hu2:D (2.85) BS01 AGS 3.6.4.6 GO:0005524 ... P55072 20512113
    148534 3hu2:D (2.85) BS02 AGS 3.6.4.6 GO:0005524 ... P55072 20512113
    148535 3hu2:E (2.85) BS01 AGS 3.6.4.6 GO:0005524 ... P55072 20512113
    148536 3hu2:E (2.85) BS02 AGS 3.6.4.6 GO:0005524 ... P55072 20512113
    148537 3hu2:F (2.85) BS01 AGS 3.6.4.6 GO:0005524 ... P55072 20512113
    148538 3hu2:F (2.85) BS02 AGS 3.6.4.6 GO:0005524 ... P55072 20512113
    148539 3hu3:A (2.2) BS01 AGS 3.6.4.6 GO:0005524 ... P55072 20512113 MOAD: Kd=0.13uM
    148540 3hu3:B (2.2) BS01 AGS 3.6.4.6 GO:0005524 ... P55072 20512113 MOAD: Kd=0.13uM
    148541 3hu6:A (2.7) BS01 peptide ? N/A O43791 19818708
    148542 3hu6:B (2.7) BS01 peptide ? N/A O43791 19818708
    148543 3hu8:A (1.8) BS01 261 3.2.1.17 GO:0003796 ... P00720 19782087 MOAD: Kd=0.79mM
    148544 3hu9:A (1.46) BS01 NBE 3.2.1.17 GO:0003796 ... P00720 19782087
    148545 3hua:A (1.4) BS01 JZ9 3.2.1.17 GO:0003796 ... P00720 19782087 MOAD: Kd=0.278mM
    148546 3hub:A (2.25) BS01 469 2.7.11.24 GO:0000165 ... Q16539 20201574 MOAD: Kd=8.2nM
    BindingDB: IC50=9nM, Kd=0.480000nM
    148547 3huc:A (1.8) BS01 G97 2.7.11.24 GO:0000165 ... Q16539 20201574 MOAD: Kd=1030nM
    148548 3hud:A (3.2) BS01 ZN 1.1.1.105 GO:0001523 ... P00325 1896463
    148549 3hud:A (3.2) BS02 ZN 1.1.1.105 GO:0001523 ... P00325 1896463
    148550 3hud:A (3.2) BS03 NAD 1.1.1.105 GO:0001523 ... P00325 1896463
    148551 3hud:B (3.2) BS01 ZN 1.1.1.105 GO:0001523 ... P00325 1896463
    148552 3hud:B (3.2) BS02 ZN 1.1.1.105 GO:0001523 ... P00325 1896463
    148553 3hud:B (3.2) BS03 NAD 1.1.1.105 GO:0001523 ... P00325 1896463
    148554 3huf:A (2.15) BS01 peptide ? GO:0006302 ... O43070 19804755
    148555 3hug:B (2.35) BS01 ZN ? N/A P9WJ67 20184899
    148556 3hug:D (2.35) BS01 ZN ? N/A P9WJ67 20184899
    148557 3hug:F (2.35) BS01 ZN ? N/A P9WJ67 20184899
    148558 3hug:H (2.35) BS01 ZN ? N/A P9WJ67 20184899
    148559 3hug:J (2.35) BS01 ZN ? N/A P9WJ67 20184899
    148560 3hug:L (2.35) BS01 ZN ? N/A P9WJ67 20184899
    148561 3hug:N (2.35) BS01 ZN ? N/A P9WJ67 20184899
    148562 3hug:P (2.35) BS01 ZN ? N/A P9WJ67 20184899
    148563 3hug:R (2.35) BS01 ZN ? N/A P9WJ67 20184899
    148564 3hug:T (2.35) BS01 ZN ? N/A P9WJ67 20184899
    148565 3hui:A (2.01) BS01 FES ? GO:0009055 ... Q6N2U2 19904564
    148566 3huj:A (2.5) BS01 AGH ? N/A P15813 19592275
    148567 3huj:C (2.5) BS01 AGH ? N/A P15813 19592275
    148568 3huj:E (2.5) BS01 AGH N/A N/A N/A 19592275
    148569 3huj:G (2.5) BS01 AGH N/A N/A N/A 19592275
    148570 3huk:A (1.29) BS01 J0Z 3.2.1.17 GO:0003796 ... P00720 19782087 MOAD: Kd=0.35mM
    148571 3hum:A (2.3) BS01 CEW 3.4.16.4 GO:0004180 ... A0A0H2WY27 19854906
    148572 3hum:B (2.3) BS01 CEW 3.4.16.4 GO:0004180 ... A0A0H2WY27 19854906
    148573 3hun:A (2.0) BS01 ZZ7 3.4.16.4 GO:0004180 ... A0A0H2WY27 19854906
    148574 3hun:B (2.0) BS01 ZZ7 3.4.16.4 GO:0004180 ... A0A0H2WY27 19854906
    148575 3huo:A (1.5) BS01 PNN 3.5.2.6 GO:0008800 ... Q9L5C8 N/A
    148576 3huo:A (1.5) BS02 PNN 3.5.2.6 GO:0008800 ... Q9L5C8 N/A
    148577 3huo:A (1.5) BS03 PNN 3.5.2.6 GO:0008800 ... Q9L5C8 N/A
    148578 3huo:A (1.5) BS04 PNN 3.5.2.6 GO:0008800 ... Q9L5C8 N/A
    148579 3huo:B (1.5) BS01 PNN 3.5.2.6 GO:0008800 ... Q9L5C8 N/A
    148580 3huo:B (1.5) BS02 PNK 3.5.2.6 GO:0008800 ... Q9L5C8 N/A
    148581 3huq:A (1.45) BS01 J1Z 3.2.1.17 GO:0003796 ... P00720 19782087 MOAD: Kd=0.25mM
    148582 3hus:B (3.04) BS01 peptide ? GO:0005102 ... P02675 19650644
    148583 3hus:B (3.04) BS02 CA ? GO:0005102 ... P02675 19650644
    148584 3hus:C (3.04) BS01 peptide ? GO:0005102 ... P02679 19650644
    148585 3hus:C (3.04) BS02 CA ? GO:0005102 ... P02679 19650644
    148586 3hus:E (3.04) BS01 peptide ? GO:0005102 ... P02675 19650644
    148587 3hus:E (3.04) BS02 CA ? GO:0005102 ... P02675 19650644
    148588 3hus:F (3.04) BS01 peptide ? GO:0005102 ... P02679 19650644
    148589 3hus:F (3.04) BS02 CA ? GO:0005102 ... P02679 19650644
    148590 3huv:A (1.9) BS01 ZN 3.4.17.1 GO:0004181 ... A6H6Y4 N/A
    148591 3hv0:A (2.42) BS01 TRP 6.1.1.2 GO:0000166 ... Q5CYP8 21255615
    148592 3hv0:B (2.42) BS01 TRP 6.1.1.2 GO:0000166 ... Q5CYP8 21255615
    148593 3hv3:A (2.0) BS01 R49 2.7.11.24 GO:0000165 ... Q16539 19928858 MOAD: ic50=900nM
    BindingDB: IC50=900nM
    148594 3hv4:A (2.6) BS01 L51 2.7.11.24 GO:0000165 ... Q16539 19928858 BindingDB: IC50=290nM
    148595 3hv4:B (2.6) BS01 L51 2.7.11.24 GO:0000165 ... Q16539 19928858 BindingDB: IC50=290nM
    148596 3hv5:A (2.25) BS01 R24 2.7.11.24 GO:0000165 ... Q16539 19928858 MOAD: ic50=150nM
    BindingDB: IC50=95nM
    148597 3hv5:B (2.25) BS01 R24 2.7.11.24 GO:0000165 ... Q16539 19928858 MOAD: ic50=150nM
    BindingDB: IC50=95nM
    148598 3hv6:A (1.95) BS01 R39 2.7.11.24 GO:0000165 ... Q16539 19928858 MOAD: ic50=5500nM
    BindingDB: IC50=5500nM, koff=0.003900s-1, kon=13000M-1-s-1, Kd=300nM
    148599 3hv7:A (2.4) BS01 1AU 2.7.11.24 GO:0000165 ... Q16539 19928858 MOAD: Kd~12nM
    BindingDB: Kd=12nM, IC50=170nM
    148600 3hv8:A (1.445) BS01 C2E 3.1.4.52 N/A Q9HUK6 19679088 MOAD: Kd=104.2nM

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).