SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    150001 3ic3:B (1.8) BS01 BGC ? N/A Q6N5V5 N/A
    150002 3ic3:D (1.8) BS01 BGC ? N/A Q6N5V5 N/A
    150003 3ic4:A (1.7) BS01 MG ? GO:0003824 ... O28736 N/A
    150004 3ic9:A (2.15) BS01 FAD ? GO:0003955 ... Q488E0 N/A
    150005 3ic9:A (2.15) BS02 FAD ? GO:0003955 ... Q488E0 N/A
    150006 3ic9:B (2.15) BS01 FAD ? GO:0003955 ... Q488E0 N/A
    150007 3ic9:C (2.15) BS01 FAD ? GO:0003955 ... Q488E0 N/A
    150008 3ic9:D (2.15) BS01 FAD ? GO:0003955 ... Q488E0 N/A
    150009 3icb:A (2.3) BS01 CA ? GO:0005509 ... P02633 3722173
    150010 3icb:A (2.3) BS02 CA ? GO:0005509 ... P02633 3722173
    150011 3icc:A (1.87) BS01 NAP ? GO:0008206 ... A0A6L7HAY4 22684058
    150012 3icc:B (1.87) BS01 NAP ? GO:0008206 ... A0A6L7HAY4 22684058
    150013 3ice:A (2.8) BS01 rna 3.6.4.- GO:0003676 ... P0AG30 19879839
    150014 3ice:A (2.8) BS02 ADP 3.6.4.- GO:0003676 ... P0AG30 19879839
    150015 3ice:A (2.8) BS03 BEF 3.6.4.- GO:0003676 ... P0AG30 19879839
    150016 3ice:A (2.8) BS04 BEF 3.6.4.- GO:0003676 ... P0AG30 19879839
    150017 3ice:B (2.8) BS01 rna 3.6.4.- GO:0003676 ... P0AG30 19879839
    150018 3ice:B (2.8) BS02 ADP 3.6.4.- GO:0003676 ... P0AG30 19879839
    150019 3ice:B (2.8) BS03 BEF 3.6.4.- GO:0003676 ... P0AG30 19879839
    150020 3ice:B (2.8) BS04 ADP 3.6.4.- GO:0003676 ... P0AG30 19879839
    150021 3ice:B (2.8) BS05 BEF 3.6.4.- GO:0003676 ... P0AG30 19879839
    150022 3ice:C (2.8) BS01 rna 3.6.4.- GO:0003676 ... P0AG30 19879839
    150023 3ice:C (2.8) BS02 ADP 3.6.4.- GO:0003676 ... P0AG30 19879839
    150024 3ice:C (2.8) BS03 BEF 3.6.4.- GO:0003676 ... P0AG30 19879839
    150025 3ice:C (2.8) BS04 ADP 3.6.4.- GO:0003676 ... P0AG30 19879839
    150026 3ice:C (2.8) BS05 BEF 3.6.4.- GO:0003676 ... P0AG30 19879839
    150027 3ice:D (2.8) BS01 rna 3.6.4.- GO:0003676 ... P0AG30 19879839
    150028 3ice:D (2.8) BS02 ADP 3.6.4.- GO:0003676 ... P0AG30 19879839
    150029 3ice:D (2.8) BS03 ADP 3.6.4.- GO:0003676 ... P0AG30 19879839
    150030 3ice:D (2.8) BS04 MG 3.6.4.- GO:0003676 ... P0AG30 19879839
    150031 3ice:D (2.8) BS05 BEF 3.6.4.- GO:0003676 ... P0AG30 19879839
    150032 3ice:E (2.8) BS01 ADP 3.6.4.- GO:0003676 ... P0AG30 19879839
    150033 3ice:E (2.8) BS02 ADP 3.6.4.- GO:0003676 ... P0AG30 19879839
    150034 3ice:E (2.8) BS03 MG 3.6.4.- GO:0003676 ... P0AG30 19879839
    150035 3ice:E (2.8) BS04 BEF 3.6.4.- GO:0003676 ... P0AG30 19879839
    150036 3ice:F (2.8) BS01 ADP 3.6.4.- GO:0003676 ... P0AG30 19879839
    150037 3ice:F (2.8) BS02 ADP 3.6.4.- GO:0003676 ... P0AG30 19879839
    150038 3icf:A (2.3) BS01 FE 3.1.3.16 GO:0016787 ... P53043 N/A
    150039 3icf:A (2.3) BS02 FE 3.1.3.16 GO:0016787 ... P53043 N/A
    150040 3icf:B (2.3) BS01 FE 3.1.3.16 GO:0016787 ... P53043 N/A
    150041 3icf:B (2.3) BS02 FE 3.1.3.16 GO:0016787 ... P53043 N/A
    150042 3ici:A (1.7) BS01 peptide 5.2.1.8 GO:0000413 ... P23284 20801878
    150043 3ici:A (1.7) BS02 ZN 5.2.1.8 GO:0000413 ... P23284 20801878
    150044 3ici:B (1.7) BS01 ZN 5.2.1.8 GO:0000413 ... P23284 20801878
    150045 3icj:A (1.95) BS01 ZN ? GO:0016810 ... Q8U2I8 N/A
    150046 3icj:A (1.95) BS02 ZN ? GO:0016810 ... Q8U2I8 N/A
    150047 3ick:A (2.4) BS01 M0N 2.5.1.10 GO:0004161 ... Q95WL3 19876942
    150048 3ick:A (2.4) BS02 IPE 2.5.1.10 GO:0004161 ... Q95WL3 19876942
    150049 3ick:A (2.4) BS03 MG 2.5.1.10 GO:0004161 ... Q95WL3 19876942
    150050 3ick:A (2.4) BS04 MG 2.5.1.10 GO:0004161 ... Q95WL3 19876942
    150051 3icm:A (2.2) BS01 P2H 2.5.1.10 GO:0004161 ... Q95WL3 19876942
    150052 3icm:A (2.2) BS02 IPE 2.5.1.10 GO:0004161 ... Q95WL3 19876942
    150053 3icm:A (2.2) BS03 MG 2.5.1.10 GO:0004161 ... Q95WL3 19876942
    150054 3icm:A (2.2) BS04 MG 2.5.1.10 GO:0004161 ... Q95WL3 19876942
    150055 3icn:A (2.4) BS01 NI9 2.5.1.10 GO:0004161 ... Q95WL3 19876942
    150056 3icn:A (2.4) BS02 MG 2.5.1.10 GO:0004161 ... Q95WL3 19876942
    150057 3icn:A (2.4) BS03 MG 2.5.1.10 GO:0004161 ... Q95WL3 19876942
    150058 3icn:A (2.4) BS04 IPE 2.5.1.10 GO:0004161 ... Q95WL3 19876942
    150059 3icp:A (2.01) BS01 NAD ? N/A A3MUJ4 N/A
    150060 3icq:B (3.2) BS01 rna ? GO:0003924 ... P32835 19680239
    150061 3icq:B (3.2) BS02 GTP ? GO:0003924 ... P32835 19680239
    150062 3icq:B (3.2) BS03 MG ? GO:0003924 ... P32835 19680239
    150063 3icq:C (3.2) BS01 rna ? GO:0003924 ... P32835 19680239
    150064 3icq:C (3.2) BS02 GTP ? GO:0003924 ... P32835 19680239
    150065 3icq:C (3.2) BS03 MG ? GO:0003924 ... P32835 19680239
    150066 3icq:T (3.2) BS01 rna ? GO:0000049 ... O94258 19680239
    150067 3icq:U (3.2) BS01 rna ? GO:0000049 ... O94258 19680239
    150068 3icq:U (3.2) BS02 GTP ? GO:0000049 ... O94258 19680239
    150069 3icr:A (2.1) BS01 FAD ? GO:0003756 ... A0A6L7H7X4 19725515
    150070 3icr:A (2.1) BS02 COA ? GO:0003756 ... A0A6L7H7X4 19725515
    150071 3icr:A (2.1) BS03 COA ? GO:0003756 ... A0A6L7H7X4 19725515
    150072 3icr:B (2.1) BS01 COA ? GO:0003756 ... A0A6L7H7X4 19725515
    150073 3icr:B (2.1) BS02 FAD ? GO:0003756 ... A0A6L7H7X4 19725515
    150074 3icr:B (2.1) BS03 COA ? GO:0003756 ... A0A6L7H7X4 19725515
    150075 3ics:A (1.94) BS01 FAD ? GO:0003756 ... A0A6L7H7X4 19725515
    150076 3ics:A (1.94) BS02 COA ? GO:0003756 ... A0A6L7H7X4 19725515
    150077 3ics:A (1.94) BS03 COA ? GO:0003756 ... A0A6L7H7X4 19725515
    150078 3ics:B (1.94) BS01 COA ? GO:0003756 ... A0A6L7H7X4 19725515
    150079 3ics:B (1.94) BS02 ADP ? GO:0003756 ... A0A6L7H7X4 19725515
    150080 3ics:B (1.94) BS03 FAD ? GO:0003756 ... A0A6L7H7X4 19725515
    150081 3ics:B (1.94) BS04 COA ? GO:0003756 ... A0A6L7H7X4 19725515
    150082 3ict:A (2.1) BS01 FAD ? GO:0003756 ... A0A6L7H7X4 19725515
    150083 3ict:A (2.1) BS02 COA ? GO:0003756 ... A0A6L7H7X4 19725515
    150084 3ict:A (2.1) BS03 COA ? GO:0003756 ... A0A6L7H7X4 19725515
    150085 3ict:B (2.1) BS01 COA ? GO:0003756 ... A0A6L7H7X4 19725515
    150086 3ict:B (2.1) BS02 FAD ? GO:0003756 ... A0A6L7H7X4 19725515
    150087 3ict:B (2.1) BS03 COA ? GO:0003756 ... A0A6L7H7X4 19725515
    150088 3ict:B (2.1) BS04 ADP ? GO:0003756 ... A0A6L7H7X4 19725515
    150089 3icw:A (1.69) BS01 MHH 3.1.1.3 N/A P41365 19683009
    150090 3icz:A (2.15) BS01 IPE 2.5.1.10 GO:0004161 ... Q95WL3 19876942
    150091 3icz:A (2.15) BS02 PB6 2.5.1.10 GO:0004161 ... Q95WL3 19876942
    150092 3icz:A (2.15) BS03 MG 2.5.1.10 GO:0004161 ... Q95WL3 19876942
    150093 3icz:A (2.15) BS04 MG 2.5.1.10 GO:0004161 ... Q95WL3 19876942
    150094 3id0:A (2.81) BS01 NI9 2.5.1.10 GO:0004161 ... Q8WS25 19876942
    150095 3id0:A (2.81) BS02 MG 2.5.1.10 GO:0004161 ... Q8WS25 19876942
    150096 3id0:A (2.81) BS03 MG 2.5.1.10 GO:0004161 ... Q8WS25 19876942
    150097 3id5:A (4.01) BS01 rna ? GO:0005515 ... Q97ZH3 19666563
    150098 3id5:B (4.01) BS01 SAM 2.1.1.- GO:0000494 ... P58032 19666563
    150099 3id5:C (4.01) BS01 rna ? GO:0001682 ... P55858 19666563
    150100 3id5:E (4.01) BS01 rna ? GO:0005515 ... Q97ZH3 19666563
    150101 3id5:F (4.01) BS01 SAM 2.1.1.- GO:0000494 ... P58032 19666563
    150102 3id5:G (4.01) BS01 rna ? GO:0001682 ... P55858 19666563
    150103 3id6:C (2.6) BS01 SAM 2.1.1.- GO:0000494 ... P58032 19666563
    150104 3id7:A (1.3) BS01 ZN ? GO:0006508 ... Q93J45 20000809
    150105 3id7:A (1.3) BS02 ZN ? GO:0006508 ... Q93J45 20000809
    150106 3id8:A (2.4) BS01 GLC 2.7.1.1 GO:0001678 ... P35557 22101819
    150107 3id8:A (2.4) BS02 MRK 2.7.1.1 GO:0001678 ... P35557 22101819 BindingDB: EC50=67.11nM, Kd=360nM
    150108 3id8:A (2.4) BS03 ANP 2.7.1.1 GO:0001678 ... P35557 22101819
    150109 3ida:A (1.6) BS01 DBC 3.1.1.84 GO:0005737 ... Q9L9D7 20086035
    150110 3idb:A (1.62) BS01 MN 2.7.11.11 GO:0000287 ... P05132 19748511
    150111 3idb:A (1.62) BS02 ANP 2.7.11.11 GO:0000287 ... P05132 19748511
    150112 3idb:B (1.62) BS01 MN ? GO:0005952 ... P12369 19748511
    150113 3idc:A (2.7) BS01 MN 2.7.11.11 GO:0000287 ... P05132 19748511
    150114 3idc:A (2.7) BS02 ANP 2.7.11.11 GO:0000287 ... P05132 19748511
    150115 3idc:B (2.7) BS01 ANP ? GO:0005952 ... P12369 19748511
    150116 3idg:A (1.86) BS01 peptide N/A N/A N/A 19740978
    150117 3idg:B (1.86) BS01 peptide N/A N/A N/A 19740978
    150118 3idh:A (2.14) BS01 GLC 2.7.1.1 GO:0001678 ... P35557 22101819
    150119 3idi:A (2.1) BS01 peptide N/A N/A N/A 19740978
    150120 3idi:B (2.1) BS01 peptide N/A N/A N/A 19740978
    150121 3idj:A (2.24) BS01 peptide N/A N/A N/A 19740978
    150122 3idj:B (2.24) BS01 peptide N/A N/A N/A 19740978
    150123 3idm:A (2.24) BS01 peptide N/A N/A N/A 19740978
    150124 3idm:B (2.24) BS01 peptide N/A N/A N/A 19740978
    150125 3idn:A (2.25) BS01 peptide N/A N/A N/A 19740978
    150126 3idn:B (2.25) BS01 peptide N/A N/A N/A 19740978
    150127 3idp:A (2.7) BS01 L1E 2.7.11.1 GO:0004672 ... P15056 19764794 BindingDB: Ki=1nM, IC50=2nM
    150128 3idp:B (2.7) BS01 L1E 2.7.11.1 GO:0004672 ... P15056 19764794 BindingDB: Ki=1nM, IC50=2nM
    150129 3idq:A (3.701) BS01 ZN 3.6.-.- GO:0000750 ... Q12154 19706470
    150130 3ids:D (1.8) BS01 NAD 1.2.1.12 GO:0004365 ... P22513 N/A
    150131 3idu:A (1.7) BS01 MN ? N/A Q8U1U6 N/A
    150132 3idu:A (1.7) BS02 MN ? N/A Q8U1U6 N/A
    150133 3idu:B (1.7) BS01 MN ? N/A Q8U1U6 N/A
    150134 3idu:B (1.7) BS02 MN ? N/A Q8U1U6 N/A
    150135 3idv:A (1.95) BS01 ZN 5.3.4.1 GO:0003756 ... P13667 20600112
    150136 3idz:A (2.5) BS01 ZN 3.1.-.- GO:0004521 ... Q5SLP1 N/A
    150137 3idz:A (2.5) BS02 ZN 3.1.-.- GO:0004521 ... Q5SLP1 N/A
    150138 3idz:B (2.5) BS01 ZN 3.1.-.- GO:0004521 ... Q5SLP1 N/A
    150139 3idz:B (2.5) BS02 ZN 3.1.-.- GO:0004521 ... Q5SLP1 N/A
    150140 3idz:C (2.5) BS01 ZN 3.1.-.- GO:0004521 ... Q5SLP1 N/A
    150141 3idz:C (2.5) BS02 ZN 3.1.-.- GO:0004521 ... Q5SLP1 N/A
    150142 3idz:D (2.5) BS01 ZN 3.1.-.- GO:0004521 ... Q5SLP1 N/A
    150143 3idz:D (2.5) BS02 ZN 3.1.-.- GO:0004521 ... Q5SLP1 N/A
    150144 3ie0:A (2.73) BS01 ZN 3.1.-.- GO:0004521 ... Q5SLP1 N/A
    150145 3ie0:A (2.73) BS02 ZN 3.1.-.- GO:0004521 ... Q5SLP1 N/A
    150146 3ie0:B (2.73) BS01 ZN 3.1.-.- GO:0004521 ... Q5SLP1 N/A
    150147 3ie0:B (2.73) BS02 ZN 3.1.-.- GO:0004521 ... Q5SLP1 N/A
    150148 3ie0:C (2.73) BS01 ZN 3.1.-.- GO:0004521 ... Q5SLP1 N/A
    150149 3ie0:C (2.73) BS02 ZN 3.1.-.- GO:0004521 ... Q5SLP1 N/A
    150150 3ie0:D (2.73) BS01 ZN 3.1.-.- GO:0004521 ... Q5SLP1 N/A
    150151 3ie0:D (2.73) BS02 ZN 3.1.-.- GO:0004521 ... Q5SLP1 N/A
    150152 3ie1:A (2.85) BS01 rna 3.1.-.- GO:0004521 ... Q5SLP1 N/A
    150153 3ie1:A (2.85) BS02 ZN 3.1.-.- GO:0004521 ... Q5SLP1 N/A
    150154 3ie1:A (2.85) BS03 ZN 3.1.-.- GO:0004521 ... Q5SLP1 N/A
    150155 3ie1:B (2.85) BS01 rna 3.1.-.- GO:0004521 ... Q5SLP1 N/A
    150156 3ie1:B (2.85) BS02 ZN 3.1.-.- GO:0004521 ... Q5SLP1 N/A
    150157 3ie1:B (2.85) BS03 ZN 3.1.-.- GO:0004521 ... Q5SLP1 N/A
    150158 3ie1:C (2.85) BS01 rna 3.1.-.- GO:0004521 ... Q5SLP1 N/A
    150159 3ie1:C (2.85) BS02 ZN 3.1.-.- GO:0004521 ... Q5SLP1 N/A
    150160 3ie1:C (2.85) BS03 ZN 3.1.-.- GO:0004521 ... Q5SLP1 N/A
    150161 3ie1:D (2.85) BS01 rna 3.1.-.- GO:0004521 ... Q5SLP1 N/A
    150162 3ie1:D (2.85) BS02 ZN 3.1.-.- GO:0004521 ... Q5SLP1 N/A
    150163 3ie1:D (2.85) BS03 ZN 3.1.-.- GO:0004521 ... Q5SLP1 N/A
    150164 3ie2:A (2.8) BS01 ZN 3.1.-.- GO:0004521 ... Q5SLP1 N/A
    150165 3ie2:B (2.8) BS01 ZN 3.1.-.- GO:0004521 ... Q5SLP1 N/A
    150166 3ie2:C (2.8) BS01 ZN 3.1.-.- GO:0004521 ... Q5SLP1 N/A
    150167 3ie2:D (2.8) BS01 ZN 3.1.-.- GO:0004521 ... Q5SLP1 N/A
    150168 3ie3:A (1.8) BS01 GSH 2.5.1.18 GO:0000122 ... P09211 19808963
    150169 3ie3:A (1.8) BS02 N11 2.5.1.18 GO:0000122 ... P09211 19808963 MOAD: Kd=0.21uM
    BindingDB: IC50=800nM
    150170 3ie3:B (1.8) BS01 GSH 2.5.1.18 GO:0000122 ... P09211 19808963
    150171 3ie3:B (1.8) BS02 N11 2.5.1.18 GO:0000122 ... P09211 19808963 MOAD: Kd=0.21uM
    BindingDB: IC50=800nM
    150172 3ie7:A (1.6) BS01 ATP 2.7.1.144 GO:0005829 ... Q929S5 N/A
    150173 3ie9:A (2.1) BS01 CU ? GO:0005507 ... P22364 19715303
    150174 3iea:A (2.2) BS01 CU ? GO:0005507 ... P22364 19715303
    150175 3iec:A (2.2) BS01 peptide 2.7.11.1
    2.7.11.26
    GO:0004672 ... Q7KZI7 19966800
    150176 3iec:B (2.2) BS01 peptide 2.7.11.1
    2.7.11.26
    GO:0004672 ... Q7KZI7 19966800
    150177 3iec:C (2.2) BS01 peptide 2.7.11.1
    2.7.11.26
    GO:0004672 ... Q7KZI7 19966800
    150178 3iec:D (2.2) BS01 peptide 2.7.11.1
    2.7.11.26
    GO:0004672 ... Q7KZI7 19966800
    150179 3ied:A (2.01) BS01 AN2 ? GO:0005524 ... Q8IL32 N/A
    150180 3ieh:A (2.45) BS01 ZN ? GO:0004181 ... A3D842 N/A
    150181 3iei:A (1.9) BS01 SAH 2.1.1.233 GO:0000086 ... Q9UIC8 N/A
    150182 3iei:B (1.9) BS01 SAH 2.1.1.233 GO:0000086 ... Q9UIC8 N/A
    150183 3iei:C (1.9) BS01 SAH 2.1.1.233 GO:0000086 ... Q9UIC8 N/A
    150184 3iei:D (1.9) BS01 SAH 2.1.1.233 GO:0000086 ... Q9UIC8 N/A
    150185 3iei:E (1.9) BS01 SAH 2.1.1.233 GO:0000086 ... Q9UIC8 N/A
    150186 3iei:F (1.9) BS01 SAH 2.1.1.233 GO:0000086 ... Q9UIC8 N/A
    150187 3iei:G (1.9) BS01 SAH 2.1.1.233 GO:0000086 ... Q9UIC8 N/A
    150188 3iei:H (1.9) BS01 SAH 2.1.1.233 GO:0000086 ... Q9UIC8 N/A
    150189 3iej:A (2.18) BS01 599 3.4.22.27 GO:0006508 ... P25774 19773165 MOAD: ic50=0.22uM
    BindingDB: IC50=220nM
    150190 3iej:B (2.18) BS01 599 3.4.22.27 GO:0006508 ... P25774 19773165 MOAD: ic50=0.22uM
    BindingDB: IC50=220nM
    150191 3iek:A (2.05) BS01 ZN 3.1.-.- GO:0004521 ... Q5SLP1 N/A
    150192 3iek:A (2.05) BS02 ZN 3.1.-.- GO:0004521 ... Q5SLP1 N/A
    150193 3iek:B (2.05) BS01 ZN 3.1.-.- GO:0004521 ... Q5SLP1 N/A
    150194 3iek:B (2.05) BS02 ZN 3.1.-.- GO:0004521 ... Q5SLP1 N/A
    150195 3iek:C (2.05) BS01 ZN 3.1.-.- GO:0004521 ... Q5SLP1 N/A
    150196 3iek:C (2.05) BS02 ZN 3.1.-.- GO:0004521 ... Q5SLP1 N/A
    150197 3iek:D (2.05) BS01 ZN 3.1.-.- GO:0004521 ... Q5SLP1 N/A
    150198 3iek:D (2.05) BS02 ZN 3.1.-.- GO:0004521 ... Q5SLP1 N/A
    150199 3iel:A (2.35) BS01 U5P 3.1.-.- GO:0004521 ... Q5SLP1 N/A
    150200 3iel:A (2.35) BS02 U5P 3.1.-.- GO:0004521 ... Q5SLP1 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).