SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    150201 3iel:A (2.35) BS03 U5P 3.1.-.- GO:0004521 ... Q5SLP1 N/A
    150202 3iel:A (2.35) BS04 ZN 3.1.-.- GO:0004521 ... Q5SLP1 N/A
    150203 3iel:A (2.35) BS05 ZN 3.1.-.- GO:0004521 ... Q5SLP1 N/A
    150204 3iel:B (2.35) BS01 U5P 3.1.-.- GO:0004521 ... Q5SLP1 N/A
    150205 3iel:B (2.35) BS02 U5P 3.1.-.- GO:0004521 ... Q5SLP1 N/A
    150206 3iel:B (2.35) BS03 ZN 3.1.-.- GO:0004521 ... Q5SLP1 N/A
    150207 3iel:B (2.35) BS04 ZN 3.1.-.- GO:0004521 ... Q5SLP1 N/A
    150208 3iel:C (2.35) BS01 U5P 3.1.-.- GO:0004521 ... Q5SLP1 N/A
    150209 3iel:C (2.35) BS02 ZN 3.1.-.- GO:0004521 ... Q5SLP1 N/A
    150210 3iel:C (2.35) BS03 ZN 3.1.-.- GO:0004521 ... Q5SLP1 N/A
    150211 3iel:D (2.35) BS01 U5P 3.1.-.- GO:0004521 ... Q5SLP1 N/A
    150212 3iel:D (2.35) BS02 ZN 3.1.-.- GO:0004521 ... Q5SLP1 N/A
    150213 3iel:D (2.35) BS03 ZN 3.1.-.- GO:0004521 ... Q5SLP1 N/A
    150214 3iem:A (2.5) BS01 rna 3.1.-.- GO:0004521 ... Q5SLP1 N/A
    150215 3iem:A (2.5) BS02 rna 3.1.-.- GO:0004521 ... Q5SLP1 N/A
    150216 3iem:A (2.5) BS03 rna 3.1.-.- GO:0004521 ... Q5SLP1 N/A
    150217 3iem:A (2.5) BS04 ZN 3.1.-.- GO:0004521 ... Q5SLP1 N/A
    150218 3iem:A (2.5) BS05 ZN 3.1.-.- GO:0004521 ... Q5SLP1 N/A
    150219 3iem:B (2.5) BS01 rna 3.1.-.- GO:0004521 ... Q5SLP1 N/A
    150220 3iem:B (2.5) BS02 rna 3.1.-.- GO:0004521 ... Q5SLP1 N/A
    150221 3iem:B (2.5) BS03 rna 3.1.-.- GO:0004521 ... Q5SLP1 N/A
    150222 3iem:B (2.5) BS04 ZN 3.1.-.- GO:0004521 ... Q5SLP1 N/A
    150223 3iem:B (2.5) BS05 ZN 3.1.-.- GO:0004521 ... Q5SLP1 N/A
    150224 3iem:C (2.5) BS01 rna 3.1.-.- GO:0004521 ... Q5SLP1 N/A
    150225 3iem:C (2.5) BS02 rna 3.1.-.- GO:0004521 ... Q5SLP1 N/A
    150226 3iem:C (2.5) BS03 ZN 3.1.-.- GO:0004521 ... Q5SLP1 N/A
    150227 3iem:C (2.5) BS04 ZN 3.1.-.- GO:0004521 ... Q5SLP1 N/A
    150228 3iem:D (2.5) BS01 rna 3.1.-.- GO:0004521 ... Q5SLP1 N/A
    150229 3iem:D (2.5) BS02 rna 3.1.-.- GO:0004521 ... Q5SLP1 N/A
    150230 3iem:D (2.5) BS03 ZN 3.1.-.- GO:0004521 ... Q5SLP1 N/A
    150231 3iem:D (2.5) BS04 ZN 3.1.-.- GO:0004521 ... Q5SLP1 N/A
    150232 3ieo:A (2.0) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 20028100
    150233 3ieo:A (2.0) BS02 AMJ 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 20028100 MOAD: Ki=331nM
    150234 3ieq:A (2.1) BS01 C 4.6.1.12 GO:0008685 ... Q3JRA0 21359640
    150235 3ieq:A (2.1) BS02 ZN 4.6.1.12 GO:0008685 ... Q3JRA0 21359640
    150236 3ieq:A (2.1) BS03 C 4.6.1.12 GO:0008685 ... Q3JRA0 21359640
    150237 3ieq:B (2.1) BS01 C 4.6.1.12 GO:0008685 ... Q3JRA0 21359640
    150238 3ieq:B (2.1) BS02 ZN 4.6.1.12 GO:0008685 ... Q3JRA0 21359640
    150239 3ieq:B (2.1) BS03 C 4.6.1.12 GO:0008685 ... Q3JRA0 21359640
    150240 3ieq:C (2.1) BS01 C 4.6.1.12 GO:0008685 ... Q3JRA0 21359640
    150241 3ieq:C (2.1) BS02 C 4.6.1.12 GO:0008685 ... Q3JRA0 21359640
    150242 3ieq:C (2.1) BS03 ZN 4.6.1.12 GO:0008685 ... Q3JRA0 21359640
    150243 3ies:A (2.0) BS01 M24 1.13.12.7 GO:0005777 ... P08659 20194791 MOAD: Kd~120pM
    150244 3iet:A (2.2) BS01 peptide N/A N/A N/A 20479270
    150245 3iet:A (2.2) BS02 ZN N/A N/A N/A 20479270
    150246 3iet:B (2.2) BS01 peptide N/A N/A N/A 20479270
    150247 3iet:C (2.2) BS01 peptide N/A N/A N/A 20479270
    150248 3iet:D (2.2) BS01 peptide N/A N/A N/A 20479270
    150249 3ieu:A (2.8) BS01 GDP ? GO:0000028 ... P06616 19706445
    150250 3ieu:B (2.8) BS01 GDP ? GO:0000028 ... P06616 19706445
    150251 3iev:A (1.9) BS01 rna ? GO:0000028 ... O67800 19706445
    150252 3iev:A (1.9) BS02 MG ? GO:0000028 ... O67800 19706445
    150253 3iev:A (1.9) BS03 GNP ? GO:0000028 ... O67800 19706445
    150254 3iew:A (2.1) BS01 ZN 4.6.1.12 GO:0008685 ... Q63T71 21359640
    150255 3iew:A (2.1) BS02 CDP 4.6.1.12 GO:0008685 ... Q63T71 21359640
    150256 3iew:A (2.1) BS03 CTP 4.6.1.12 GO:0008685 ... Q63T71 21359640
    150257 3iew:B (2.1) BS01 CTP 4.6.1.12 GO:0008685 ... Q63T71 21359640
    150258 3iew:B (2.1) BS02 ZN 4.6.1.12 GO:0008685 ... Q63T71 21359640
    150259 3iew:B (2.1) BS03 CDP 4.6.1.12 GO:0008685 ... Q63T71 21359640
    150260 3iew:C (2.1) BS01 CDP 4.6.1.12 GO:0008685 ... Q63T71 21359640
    150261 3iew:C (2.1) BS02 CDP 4.6.1.12 GO:0008685 ... Q63T71 21359640
    150262 3iew:C (2.1) BS03 ZN 4.6.1.12 GO:0008685 ... Q63T71 21359640
    150263 3iex:A (2.05) BS01 GMP 2.4.2.1 GO:0003824 ... Q9BMI9 20129792
    150264 3iex:C (2.05) BS01 GMP 2.4.2.1 GO:0003824 ... Q9BMI9 20129792
    150265 3if1:A (2.39) BS01 ZN N/A N/A N/A 20479270
    150266 3if2:A (2.5) BS01 PLP 2.6.1.- GO:0005829 ... Q4FPU3 N/A
    150267 3if2:B (2.5) BS01 PLP 2.6.1.- GO:0005829 ... Q4FPU3 N/A
    150268 3if2:B (2.5) BS02 PLP 2.6.1.- GO:0005829 ... Q4FPU3 N/A
    150269 3if7:A (1.6) BS01 CA ? GO:0000922 ... P62157 20522785
    150270 3if7:A (1.6) BS02 CA ? GO:0000922 ... P62157 20522785
    150271 3if7:A (1.6) BS03 CA ? GO:0000922 ... P62157 20522785
    150272 3if7:A (1.6) BS04 CA ? GO:0000922 ... P62157 20522785
    150273 3if7:A (1.6) BS05 SPU ? GO:0000922 ... P62157 20522785 MOAD: Kd=61nM
    150274 3if7:A (1.6) BS06 SPU ? GO:0000922 ... P62157 20522785 MOAD: Kd=61nM
    150275 3if7:A (1.6) BS07 SPU ? GO:0000922 ... P62157 20522785 MOAD: Kd=61nM
    150276 3if7:A (1.6) BS08 SPU ? GO:0000922 ... P62157 20522785 MOAD: Kd=61nM
    150277 3if9:A (2.6) BS01 GOA 1.4.3.19 GO:0005737 ... O31616 19864430
    150278 3if9:A (2.6) BS02 FAD 1.4.3.19 GO:0005737 ... O31616 19864430
    150279 3if9:B (2.6) BS01 GOA 1.4.3.19 GO:0005737 ... O31616 19864430
    150280 3if9:B (2.6) BS02 FAD 1.4.3.19 GO:0005737 ... O31616 19864430
    150281 3if9:C (2.6) BS01 GOA 1.4.3.19 GO:0005737 ... O31616 19864430
    150282 3if9:C (2.6) BS02 FAD 1.4.3.19 GO:0005737 ... O31616 19864430
    150283 3if9:D (2.6) BS01 GOA 1.4.3.19 GO:0005737 ... O31616 19864430
    150284 3if9:D (2.6) BS02 FAD 1.4.3.19 GO:0005737 ... O31616 19864430
    150285 3ifa:A (1.93) BS01 AMP 3.1.3.11 GO:0005515 ... O00757 22120740
    150286 3ifa:B (1.93) BS01 AMP 3.1.3.11 GO:0005515 ... O00757 22120740
    150287 3ifa:C (1.93) BS01 AMP 3.1.3.11 GO:0005515 ... O00757 22120740
    150288 3ifa:D (1.93) BS01 AMP 3.1.3.11 GO:0005515 ... O00757 22120740
    150289 3ifc:A (1.97) BS01 AMP 3.1.3.11 GO:0005515 ... O00757 22120740
    150290 3ifc:A (1.97) BS02 P6P 3.1.3.11 GO:0005515 ... O00757 22120740
    150291 3ifc:B (1.97) BS01 AMP 3.1.3.11 GO:0005515 ... O00757 22120740
    150292 3ifc:B (1.97) BS02 P6P 3.1.3.11 GO:0005515 ... O00757 22120740
    150293 3ifc:C (1.97) BS01 AMP 3.1.3.11 GO:0005515 ... O00757 22120740
    150294 3ifc:C (1.97) BS02 P6P 3.1.3.11 GO:0005515 ... O00757 22120740
    150295 3ifc:D (1.97) BS01 AMP 3.1.3.11 GO:0005515 ... O00757 22120740
    150296 3ifc:D (1.97) BS02 P6P 3.1.3.11 GO:0005515 ... O00757 22120740
    150297 3ife:A (1.55) BS01 FRU 3.4.11.4 GO:0005737 ... Q81WU4 N/A
    150298 3ife:A (1.55) BS02 ZN 3.4.11.4 GO:0005737 ... Q81WU4 N/A
    150299 3ife:A (1.55) BS03 ZN 3.4.11.4 GO:0005737 ... Q81WU4 N/A
    150300 3ifj:A (1.9) BS01 ZN 3.1.-.- GO:0016539 ... P9WHJ3 19744499
    150301 3ifj:B (1.9) BS01 ZN 3.1.-.- GO:0016539 ... P9WHJ3 19744499
    150302 3ifk:A (2.03) BS01 CA ? GO:0005509 ... P0DP29 21609874
    150303 3ifk:A (2.03) BS02 CA ? GO:0005509 ... P0DP29 21609874
    150304 3ifk:B (2.03) BS01 CA ? GO:0005509 ... P0DP29 21609874
    150305 3ifk:B (2.03) BS02 CA ? GO:0005509 ... P0DP29 21609874
    150306 3ifl:H (1.5) BS01 peptide N/A N/A N/A 19923222
    150307 3ifl:L (1.5) BS01 peptide N/A N/A N/A 19923222
    150308 3ifn:H (1.5) BS01 peptide N/A N/A N/A 19923222
    150309 3ifn:L (1.5) BS01 peptide N/A N/A N/A 19923222
    150310 3ifo:A (2.15) BS01 peptide N/A N/A N/A 19923222
    150311 3ifo:B (2.15) BS01 peptide N/A N/A N/A 19923222
    150312 3ifo:H (2.15) BS01 peptide N/A N/A N/A 19923222
    150313 3ifo:L (2.15) BS01 peptide N/A N/A N/A 19923222
    150314 3ifp:A (2.95) BS01 peptide N/A N/A N/A 19923222
    150315 3ifp:B (2.95) BS01 peptide N/A N/A N/A 19923222
    150316 3ifp:C (2.95) BS01 peptide N/A N/A N/A 19923222
    150317 3ifp:D (2.95) BS01 peptide N/A N/A N/A 19923222
    150318 3ifp:E (2.95) BS01 peptide N/A N/A N/A 19923222
    150319 3ifp:F (2.95) BS01 peptide N/A N/A N/A 19923222
    150320 3ifp:H (2.95) BS01 peptide N/A N/A N/A 19923222
    150321 3ifp:L (2.95) BS01 peptide N/A N/A N/A 19923222
    150322 3ifu:A (2.42) BS01 ZN 3.4.19.12 GO:0004197 ... B6VGX5 19706710
    150323 3ifu:A (2.42) BS02 ZN 3.4.19.12 GO:0004197 ... B6VGX5 19706710
    150324 3ifw:A (2.4) BS01 GVE 3.4.19.12 GO:0004197 ... P09936 20439756
    150325 3ifx:A (3.56) BS01 MTN ? N/A P0A334 20092291
    150326 3ifx:A (3.56) BS02 TBA ? N/A P0A334 20092291
    150327 3ifx:B (3.56) BS01 TBA ? N/A P0A334 20092291
    150328 3ifx:B (3.56) BS02 MTN ? N/A P0A334 20092291
    150329 3ifx:C (3.56) BS01 TBA ? N/A P0A334 20092291
    150330 3ifx:C (3.56) BS02 MTN ? N/A P0A334 20092291
    150331 3ifx:D (3.56) BS01 MTN ? N/A P0A334 20092291
    150332 3ig1:A (2.8) BS01 MN 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 20004166
    150333 3ig1:A (2.8) BS02 MN 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 20004166
    150334 3ig4:A (2.89) BS01 MN ? GO:0004177 ... A0A6L8PS06 N/A
    150335 3ig4:A (2.89) BS02 MN ? GO:0004177 ... A0A6L8PS06 N/A
    150336 3ig4:B (2.89) BS01 MN ? GO:0004177 ... A0A6L8PS06 N/A
    150337 3ig4:B (2.89) BS02 MN ? GO:0004177 ... A0A6L8PS06 N/A
    150338 3ig4:C (2.89) BS01 MN ? GO:0004177 ... A0A6L8PS06 N/A
    150339 3ig4:C (2.89) BS02 MN ? GO:0004177 ... A0A6L8PS06 N/A
    150340 3ig4:D (2.89) BS01 MN ? GO:0004177 ... A0A6L8PS06 N/A
    150341 3ig4:D (2.89) BS02 MN ? GO:0004177 ... A0A6L8PS06 N/A
    150342 3ig4:E (2.89) BS01 MN ? GO:0004177 ... A0A6L8PS06 N/A
    150343 3ig4:E (2.89) BS02 MN ? GO:0004177 ... A0A6L8PS06 N/A
    150344 3ig4:F (2.89) BS01 MN ? GO:0004177 ... A0A6L8PS06 N/A
    150345 3ig4:F (2.89) BS02 MN ? GO:0004177 ... A0A6L8PS06 N/A
    150346 3ig5:A (2.1) BS01 GLU 6.3.2.2 GO:0003824 ... P32477 19726687
    150347 3ig5:A (2.1) BS02 MG 6.3.2.2 GO:0003824 ... P32477 19726687
    150348 3ig6:B (1.83) BS01 peptide 3.4.21.73 GO:0004252 ... P00749 19703768
    150349 3ig6:B (1.83) BS02 438 3.4.21.73 GO:0004252 ... P00749 19703768 MOAD: ic50=0.025uM
    BindingDB: IC50=25nM
    150350 3ig6:B (1.83) BS03 438 3.4.21.73 GO:0004252 ... P00749 19703768 MOAD: ic50=0.025uM
    BindingDB: IC50=25nM
    150351 3ig6:D (1.83) BS01 peptide 3.4.21.73 GO:0004252 ... P00749 19703768
    150352 3ig6:D (1.83) BS02 438 3.4.21.73 GO:0004252 ... P00749 19703768 MOAD: ic50=0.025uM
    BindingDB: IC50=25nM
    150353 3ig6:D (1.83) BS03 438 3.4.21.73 GO:0004252 ... P00749 19703768 MOAD: ic50=0.025uM
    BindingDB: IC50=25nM
    150354 3ig7:A (1.8) BS01 EFP 2.7.11.22 GO:0000082 ... P24941 19700321 MOAD: ic50=9nM
    150355 3ig8:A (2.69) BS01 GLU 6.3.2.2 GO:0003824 ... P32477 19726687
    150356 3ig8:A (2.69) BS02 ADP 6.3.2.2 GO:0003824 ... P32477 19726687
    150357 3ig8:A (2.69) BS03 MG 6.3.2.2 GO:0003824 ... P32477 19726687
    150358 3ig8:A (2.69) BS04 MG 6.3.2.2 GO:0003824 ... P32477 19726687
    150359 3ig8:A (2.69) BS05 MG 6.3.2.2 GO:0003824 ... P32477 19726687
    150360 3igb:A (2.238) BS01 454 3.4.23.46 GO:0004190 ... P56817 19757823 MOAD: ic50=38uM
    BindingDB: IC50=38000nM, EC50=16000nM
    150361 3igc:A (2.1) BS01 dna 5.6.2.1 GO:0003677 ... P32989 20152159
    150362 3igc:A (2.1) BS02 dna 5.6.2.1 GO:0003677 ... P32989 20152159
    150363 3igc:A (2.1) BS03 dna 5.6.2.1 GO:0003677 ... P32989 20152159
    150364 3igc:A (2.1) BS04 VO4 5.6.2.1 GO:0003677 ... P32989 20152159
    150365 3igd:A (2.4) BS01 ZN 3.1.-.- GO:0016539 ... P9WHJ3 19744499
    150366 3igg:A (1.8) BS01 EFQ 2.7.11.22 GO:0000082 ... P24941 19700321 MOAD: ic50=95nM
    150367 3igj:A (2.6) BS01 ACO 2.3.1.79 GO:0005829 ... A0A6L7H2S4 N/A
    150368 3igj:A (2.6) BS02 ACO 2.3.1.79 GO:0005829 ... A0A6L7H2S4 N/A
    150369 3igj:B (2.6) BS01 ACO 2.3.1.79 GO:0005829 ... A0A6L7H2S4 N/A
    150370 3igj:B (2.6) BS02 ACO 2.3.1.79 GO:0005829 ... A0A6L7H2S4 N/A
    150371 3igj:C (2.6) BS01 ACO 2.3.1.79 GO:0005829 ... A0A6L7H2S4 N/A
    150372 3igj:C (2.6) BS02 ACO 2.3.1.79 GO:0005829 ... A0A6L7H2S4 N/A
    150373 3igk:A (1.7) BS01 dna ? GO:0000976 ... P04637 20364130
    150374 3igk:A (1.7) BS02 ZN ? GO:0000976 ... P04637 20364130
    150375 3igl:A (1.8) BS01 dna ? GO:0000976 ... P04637 20364130
    150376 3igl:A (1.8) BS02 ZN ? GO:0000976 ... P04637 20364130
    150377 3igm:A (2.2) BS01 dna ? GO:0003700 ... Q8IKH2 19913037
    150378 3igm:A (2.2) BS02 dna ? GO:0003700 ... Q8IKH2 19913037
    150379 3igm:B (2.2) BS01 dna ? GO:0003700 ... Q8IKH2 19913037
    150380 3igm:B (2.2) BS02 dna ? GO:0003700 ... Q8IKH2 19913037
    150381 3ign:A (1.83) BS01 C2E 2.7.7.65 N/A A1U3W3 22843345
    150382 3ign:A (1.83) BS02 C2E 2.7.7.65 N/A A1U3W3 22843345
    150383 3igo:A (2.25) BS01 CA ? GO:0004672 ... A3FQ16 20436473
    150384 3igo:A (2.25) BS02 CA ? GO:0004672 ... A3FQ16 20436473
    150385 3igo:A (2.25) BS03 CA ? GO:0004672 ... A3FQ16 20436473
    150386 3igo:A (2.25) BS04 ANP ? GO:0004672 ... A3FQ16 20436473
    150387 3igo:A (2.25) BS05 CA ? GO:0004672 ... A3FQ16 20436473
    150388 3igp:A (1.65) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 20170095
    150389 3igp:A (1.65) BS02 DT7 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 20170095 MOAD: Ki=32.8nM
    150390 3igp:A (1.65) BS03 DT7 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 20170095 MOAD: Ki=32.8nM
    150391 3igs:A (1.5) BS01 16G 5.1.3.9 GO:0005829 ... Q8ZLQ7 N/A
    150392 3igu:A (2.15) BS01 7JZ 3.2.1.49 GO:0004553 ... P17050 19683538
    150393 3igu:B (2.15) BS01 7JZ 3.2.1.49 GO:0004553 ... P17050 19683538
    150394 3igv:A (2.6) BS01 B80 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13
    GO:0003723 ... P26663 19796938
    150395 3igv:B (2.6) BS01 B80 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13
    GO:0003723 ... P26663 19796938
    150396 3igy:B (2.003) BS01 CO 5.4.2.12 GO:0003824 ... Q86N96 19781556
    150397 3igy:B (2.003) BS02 CO 5.4.2.12 GO:0003824 ... Q86N96 19781556
    150398 3igy:B (2.003) BS03 2PG 5.4.2.12 GO:0003824 ... Q86N96 19781556
    150399 3igz:B (1.9) BS01 CO 5.4.2.12 GO:0003824 ... Q86N96 19781556
    150400 3igz:B (1.9) BS02 CO 5.4.2.12 GO:0003824 ... Q86N96 19781556

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).