SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    151801 3iwo:A (1.9) BS02 FRU 3.5.2.6 GO:0008800 ... P00811 19913034
    151802 3iwo:B (1.9) BS01 GLC 3.5.2.6 GO:0008800 ... P00811 19913034
    151803 3iwo:B (1.9) BS02 FRU 3.5.2.6 GO:0008800 ... P00811 19913034
    151804 3iwo:B (1.9) BS03 FRU 3.5.2.6 GO:0008800 ... P00811 19913034
    151805 3iww:A (2.3) BS01 ZN 3.4.17.21 GO:0004180 ... Q04609 19897367
    151806 3iww:A (2.3) BS02 ZN 3.4.17.21 GO:0004180 ... Q04609 19897367
    151807 3iww:A (2.3) BS03 CA 3.4.17.21 GO:0004180 ... Q04609 19897367
    151808 3iww:A (2.3) BS04 YZE 3.4.17.21 GO:0004180 ... Q04609 19897367 MOAD: Ki=11nM
    BindingDB: Ki=11nM
    151809 3iwx:A (2.14) BS01 CPT ? GO:0005507 ... O00244 19807176
    151810 3iwx:B (2.14) BS01 CPT ? GO:0005507 ... O00244 19807176
    151811 3iwy:A (1.93) BS01 peptide 2.3.2.27 GO:0005634 ... Q00987 20660730
    151812 3iwy:A (1.93) BS02 peptide 2.3.2.27 GO:0005634 ... Q00987 20660730
    151813 3iwy:C (1.93) BS01 peptide 2.3.2.27 GO:0005634 ... Q00987 20660730
    151814 3iwy:C (1.93) BS02 peptide 2.3.2.27 GO:0005634 ... Q00987 20660730
    151815 3ix1:A (2.4) BS01 NFM ? GO:0005886 ... Q9K9G5 20873853 MOAD: Kd=200nM
    151816 3ix1:B (2.4) BS01 NFM ? GO:0005886 ... Q9K9G5 20873853 MOAD: Kd=200nM
    151817 3ix2:A (2.1) BS01 PO4 2.4.2.1 GO:0003824 ... P9WP01 22033138
    151818 3ix2:A (2.1) BS02 AC2 2.4.2.1 GO:0003824 ... P9WP01 22033138 BindingDB: Kd=12589nM
    151819 3ix2:B (2.1) BS01 PO4 2.4.2.1 GO:0003824 ... P9WP01 22033138
    151820 3ix2:B (2.1) BS02 AC2 2.4.2.1 GO:0003824 ... P9WP01 22033138 BindingDB: Kd=12589nM
    151821 3ix2:C (2.1) BS01 PO4 2.4.2.1 GO:0003824 ... P9WP01 22033138
    151822 3ix2:C (2.1) BS02 AC2 2.4.2.1 GO:0003824 ... P9WP01 22033138 BindingDB: Kd=12589nM
    151823 3ix3:A (1.4) BS01 OHN ? N/A P25084 N/A BindingDB: EC50=139nM
    151824 3ix3:B (1.4) BS01 OHN ? N/A P25084 N/A BindingDB: EC50=139nM
    151825 3ix4:A (1.8) BS01 TX1 ? N/A P25084 19778724 BindingDB: EC50=28nM
    151826 3ix4:B (1.8) BS01 TX1 ? N/A P25084 19778724 BindingDB: EC50=28nM
    151827 3ix4:C (1.8) BS01 TX1 ? N/A P25084 19778724 BindingDB: EC50=28nM
    151828 3ix4:D (1.8) BS01 TX1 ? N/A P25084 19778724 BindingDB: EC50=28nM
    151829 3ix4:E (1.8) BS01 TX1 ? N/A P25084 19778724 BindingDB: EC50=28nM
    151830 3ix4:F (1.8) BS01 TX1 ? N/A P25084 19778724 BindingDB: EC50=28nM
    151831 3ix4:G (1.8) BS01 TX1 ? N/A P25084 19778724 BindingDB: EC50=28nM
    151832 3ix4:H (1.8) BS01 TX1 ? N/A P25084 19778724 BindingDB: EC50=28nM
    151833 3ix8:A (1.8) BS01 TX3 ? N/A P25084 19778724
    151834 3ix8:B (1.8) BS01 TX3 ? N/A P25084 19778724
    151835 3ix8:C (1.8) BS01 TX3 ? N/A P25084 19778724
    151836 3ix8:D (1.8) BS01 TX3 ? N/A P25084 19778724
    151837 3ix9:A (1.95) BS01 NDP 1.5.1.3 GO:0004146 ... Q54801 19950924
    151838 3ix9:A (1.95) BS02 MTX 1.5.1.3 GO:0004146 ... Q54801 19950924 MOAD: Ki=3.9nM
    151839 3ix9:B (1.95) BS01 NDP 1.5.1.3 GO:0004146 ... Q54801 19950924
    151840 3ix9:B (1.95) BS02 MTX 1.5.1.3 GO:0004146 ... Q54801 19950924 MOAD: Ki=3.9nM
    151841 3ixa:A (2.1) BS01 peptide ? N/A P04439 20064447
    151842 3ixa:D (2.1) BS01 peptide ? N/A P04439 20064447
    151843 3ixb:A (1.63) BS01 BZB 3.5.2.6 GO:0008800 ... P00811 19913034 BindingDB: IC50=200nM, Ki=27nM
    151844 3ixb:B (1.63) BS01 BZB 3.5.2.6 GO:0008800 ... P00811 19913034 BindingDB: IC50=200nM, Ki=27nM
    151845 3ixc:A (1.61) BS01 MG ? N/A Q2GIS1 N/A
    151846 3ixe:B (1.9) BS01 ZN ? N/A Q7Z4I7 19963065
    151847 3ixe:B (1.9) BS02 ZN ? N/A Q7Z4I7 19963065
    151848 3ixf:A (1.58) BS01 HEM ? GO:0019825 ... Q9NAV7 20445228
    151849 3ixf:A (1.58) BS02 OXY ? GO:0019825 ... Q9NAV7 20445228
    151850 3ixf:B (1.58) BS01 HEM ? GO:0019825 ... Q9NAV7 20445228
    151851 3ixg:B (2.14) BS01 BZB 3.5.2.6 GO:0008800 ... P00811 19913034 BindingDB: IC50=200nM, Ki=27nM
    151852 3ixh:B (2.3) BS01 CEF 3.5.2.6 GO:0008800 ... P00811 19913034
    151853 3ixj:A (2.2) BS01 586 3.4.23.46 GO:0004190 ... P56817 20128595 MOAD: ic50=0.32nM
    BindingDB: Ki=<1nM, IC50=0.320000nM
    151854 3ixj:B (2.2) BS01 586 3.4.23.46 GO:0004190 ... P56817 20128595 MOAD: ic50=0.32nM
    BindingDB: Ki=<1nM, IC50=0.320000nM
    151855 3ixj:C (2.2) BS01 586 3.4.23.46 GO:0004190 ... P56817 20128595 MOAD: ic50=0.32nM
    BindingDB: Ki=<1nM, IC50=0.320000nM
    151856 3ixk:A (2.5) BS01 929 3.4.23.46 GO:0004190 ... P56817 20036448 MOAD: ic50=6.6nM
    BindingDB: IC50=4500nM
    151857 3ixk:B (2.5) BS01 929 3.4.23.46 GO:0004190 ... P56817 20036448 MOAD: ic50=6.6nM
    BindingDB: IC50=4500nM
    151858 3ixk:C (2.5) BS01 929 3.4.23.46 GO:0004190 ... P56817 20036448 MOAD: ic50=6.6nM
    BindingDB: IC50=4500nM
    151859 3ixl:A (1.45) BS01 PAC 4.1.1.76 GO:0047436 ... Q05115 20136121
    151860 3ixp:A (2.85) BS01 EPH ? GO:0003677 ... Q7SIF6 N/A
    151861 3ixp:D (2.85) BS01 834 ? GO:0003677 ... B9UCQ4 N/A
    151862 3ixt:A (2.75) BS01 peptide N/A N/A N/A 20098425
    151863 3ixt:B (2.75) BS01 peptide N/A N/A N/A 20098425
    151864 3ixt:H (2.75) BS01 peptide N/A N/A N/A 20098425
    151865 3ixt:L (2.75) BS01 peptide N/A N/A N/A 20098425
    151866 3iy8:H (14.1) BS01 rna ? GO:0000028 ... P0A7W7 19497863
    151867 3iy8:K (14.1) BS01 rna ? GO:0002181 ... P0A7R9 19497863
    151868 3iy8:L (14.1) BS01 rna ? GO:0000049 ... P0A7S3 19497863
    151869 3iy9:C (14.1) BS01 rna ? GO:0000027 ... P60438 19497863
    151870 3iy9:I (14.1) BS01 rna ? GO:0003735 ... Q9NX20 19497863
    151871 3iy9:L (14.1) BS01 rna ? GO:0002181 ... P02413 19497863
    151872 3iy9:Q (14.1) BS01 rna ? GO:0000027 ... P0A7L3 19497863
    151873 3iy9:S (14.1) BS01 rna ? GO:0003735 ... Q3T0L3 19497863
    151874 3iyd:A (19.8) BS01 dna 2.7.7.6 GO:0003677 ... P0A7Z4 19903881
    151875 3iyd:C (19.8) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 19903881
    151876 3iyd:C (19.8) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 19903881
    151877 3iyd:D (19.8) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 19903881
    151878 3iyd:F (19.8) BS01 dna ? GO:0000976 ... P00579 19903881
    151879 3iyd:F (19.8) BS02 dna ? GO:0000976 ... P00579 19903881
    151880 3iyd:G (19.8) BS01 dna ? GO:0003677 ... P0ACJ8 19903881
    151881 3iyd:G (19.8) BS02 dna ? GO:0003677 ... P0ACJ8 19903881
    151882 3iyd:G (19.8) BS03 CMP ? GO:0003677 ... P0ACJ8 19903881
    151883 3iyd:H (19.8) BS01 dna ? GO:0003677 ... P0ACJ8 19903881
    151884 3iyd:H (19.8) BS02 dna ? GO:0003677 ... P0ACJ8 19903881
    151885 3iyd:H (19.8) BS03 CMP ? GO:0003677 ... P0ACJ8 19903881
    151886 3iyq:B (13.0) BS01 rna ? GO:0003723 ... Q8RR57 20953161
    151887 3iyr:B (13.0) BS01 rna ? GO:0003723 ... Q8RR57 20953161
    151888 3iz0:A (8.6) BS01 GTP 3.6.5.- GO:0000226 ... Q2HJ86 20944740
    151889 3iz0:B (8.6) BS01 GDP ? GO:0000226 ... Q6B856 20944740
    151890 3iz0:B (8.6) BS02 TA1 ? GO:0000226 ... Q6B856 20944740
    151891 3iz4:B (13.6) BS01 rna ? GO:0003723 ... Q8RR57 20940705
    151892 3izo:A (3.6) BS01 peptide ? GO:0005198 ... P12538 21146538
    151893 3izo:B (3.6) BS01 peptide ? GO:0005198 ... P12538 21146538
    151894 3izo:B (3.6) BS02 peptide ? GO:0005198 ... P12538 21146538
    151895 3izo:C (3.6) BS01 peptide ? GO:0005198 ... P12538 21146538
    151896 3izo:D (3.6) BS01 peptide ? GO:0005198 ... P12538 21146538
    151897 3izo:E (3.6) BS01 peptide ? GO:0005198 ... P12538 21146538
    151898 3izy:P (10.8) BS01 rna ? GO:0003743 ... P46198 21368145
    151899 3izz:F (10.8) BS01 rna N/A GO:0003735 ... N/A 21368145
    151900 3izz:G (10.8) BS01 rna ? GO:0002181 ... P0ADY3 21368145
    151901 3izz:G (10.8) BS02 rna ? GO:0002181 ... P0ADY3 21368145
    151902 3j06:A (3.3) BS01 rna ? GO:0005198 ... P69687 21586634
    151903 3j0a:B (26.0) BS01 FUC ? GO:0002224 ... O60602 22173220
    151904 3j0d:G (11.1) BS01 rna ? GO:0000027 ... P0A7J7 22388519
    151905 3j0d:I (11.1) BS01 rna ? GO:0000049 ... P0A7S3 22388519
    151906 3j0d:I (11.1) BS02 rna ? GO:0000049 ... P0A7S3 22388519
    151907 3j0e:G (9.9) BS01 rna ? GO:0005737 ... Q9WX76 22388519
    151908 3j0e:G (9.9) BS02 rna ? GO:0005737 ... Q9WX76 22388519
    151909 3j0e:G (9.9) BS03 rna ? GO:0005737 ... Q9WX76 22388519
    151910 3j0j:A (9.7) BS01 ADP 7.1.2.2 GO:0005515 ... Q56403 22178924
    151911 3j0j:C (9.7) BS01 ADP 7.1.2.2 GO:0005515 ... Q56403 22178924
    151912 3j0k:A (36.0) BS01 ZN 2.7.7.6 GO:0003677 ... P04050 21468301
    151913 3j0k:A (36.0) BS02 ZN 2.7.7.6 GO:0003677 ... P04050 21468301
    151914 3j0k:B (36.0) BS01 ZN 2.7.7.6 GO:0001172 ... P08518 21468301
    151915 3j0k:C (36.0) BS01 ZN 2.7.7.6 GO:0003677 ... P16370 21468301
    151916 3j0k:I (36.0) BS01 ZN 2.7.7.6 GO:0001172 ... P27999 21468301
    151917 3j0k:I (36.0) BS02 ZN 2.7.7.6 GO:0001172 ... P27999 21468301
    151918 3j0k:J (36.0) BS01 ZN 2.7.7.6 GO:0001172 ... P22139 21468301
    151919 3j0k:L (36.0) BS01 ZN N/A GO:0003677 ... N/A 21468301
    151920 3j0l:B (9.8) BS01 rna N/A GO:0003723 ... N/A 22017870
    151921 3j0l:F (9.8) BS01 rna N/A GO:0003735 ... N/A 22017870
    151922 3j0l:F (9.8) BS02 rna N/A GO:0003735 ... N/A 22017870
    151923 3j0l:J (9.8) BS01 rna N/A GO:0003735 ... N/A 22017870
    151924 3j0l:J (9.8) BS02 rna N/A GO:0003735 ... N/A 22017870
    151925 3j0l:J (9.8) BS03 rna N/A GO:0003735 ... N/A 22017870
    151926 3j0l:K (9.8) BS01 rna N/A GO:0003735 ... N/A 22017870
    151927 3j0l:K (9.8) BS02 rna N/A GO:0003735 ... N/A 22017870
    151928 3j0l:L (9.8) BS01 rna N/A GO:0003735 ... N/A 22017870
    151929 3j0l:S (9.8) BS01 rna N/A GO:0003723 ... N/A 22017870
    151930 3j0l:S (9.8) BS02 rna N/A GO:0003723 ... N/A 22017870
    151931 3j0l:T (9.8) BS01 rna N/A GO:0003723 ... N/A 22017870
    151932 3j0l:X (9.8) BS01 rna N/A GO:0003735 ... N/A 22017870
    151933 3j0o:B (9.0) BS01 rna N/A GO:0003723 ... N/A 22017870
    151934 3j0o:F (9.0) BS01 rna N/A GO:0003735 ... N/A 22017870
    151935 3j0o:F (9.0) BS02 rna N/A GO:0003735 ... N/A 22017870
    151936 3j0o:K (9.0) BS01 rna N/A GO:0003735 ... N/A 22017870
    151937 3j0o:K (9.0) BS02 rna N/A GO:0003735 ... N/A 22017870
    151938 3j0o:L (9.0) BS01 rna N/A GO:0003735 ... N/A 22017870
    151939 3j0o:S (9.0) BS01 rna N/A GO:0003723 ... N/A 22017870
    151940 3j0o:S (9.0) BS02 rna N/A GO:0003723 ... N/A 22017870
    151941 3j0o:T (9.0) BS01 rna N/A GO:0003723 ... N/A 22017870
    151942 3j0o:T (9.0) BS02 rna N/A GO:0003723 ... N/A 22017870
    151943 3j0o:X (9.0) BS01 rna N/A GO:0003735 ... N/A 22017870
    151944 3j0p:B (10.6) BS01 rna ? GO:0000055 ... P0CX43 22017870
    151945 3j0p:B (10.6) BS02 rna ? GO:0000055 ... P0CX43 22017870
    151946 3j0p:L (10.6) BS01 rna N/A GO:0003735 ... N/A 22017870
    151947 3j0p:L (10.6) BS02 rna N/A GO:0003735 ... N/A 22017870
    151948 3j0p:S (10.6) BS01 rna N/A GO:0003723 ... N/A 22017870
    151949 3j0p:S (10.6) BS02 rna N/A GO:0003723 ... N/A 22017870
    151950 3j0p:X (10.6) BS01 rna N/A GO:0003735 ... N/A 22017870
    151951 3j0q:B (10.6) BS01 rna ? GO:0000055 ... P0CX43 22017870
    151952 3j0q:B (10.6) BS02 rna ? GO:0000055 ... P0CX43 22017870
    151953 3j0q:J (10.6) BS01 rna N/A GO:0003735 ... N/A 22017870
    151954 3j0q:L (10.6) BS01 rna N/A GO:0003735 ... N/A 22017870
    151955 3j0q:L (10.6) BS02 rna N/A GO:0003735 ... N/A 22017870
    151956 3j0q:S (10.6) BS01 rna N/A GO:0003723 ... N/A 22017870
    151957 3j0q:S (10.6) BS02 rna N/A GO:0003723 ... N/A 22017870
    151958 3j0q:X (10.6) BS01 rna N/A GO:0003735 ... N/A 22017870
    151959 3j0q:k (10.6) BS01 rna ? GO:0000027 ... Q3E757 22017870
    151960 3j15:B (6.6) BS01 ADP N/A GO:0005524 ... N/A 22358840
    151961 3j15:B (6.6) BS02 ADP N/A GO:0005524 ... N/A 22358840
    151962 3j15:B (6.6) BS03 SF4 N/A GO:0005524 ... N/A 22358840
    151963 3j15:B (6.6) BS04 SF4 N/A GO:0005524 ... N/A 22358840
    151964 3j16:A (7.2) BS01 rna ? GO:0002181 ... P33309 22358840
    151965 3j16:A (7.2) BS02 rna ? GO:0002181 ... P33309 22358840
    151966 3j16:A (7.2) BS03 rna ? GO:0002181 ... P33309 22358840
    151967 3j16:B (7.2) BS01 rna ? GO:0000054 ... Q03195 22358840
    151968 3j16:B (7.2) BS02 rna ? GO:0000054 ... Q03195 22358840
    151969 3j16:B (7.2) BS03 MG ? GO:0000054 ... Q03195 22358840
    151970 3j16:B (7.2) BS04 ATP ? GO:0000054 ... Q03195 22358840
    151971 3j16:B (7.2) BS05 SF4 ? GO:0000054 ... Q03195 22358840
    151972 3j16:B (7.2) BS06 SF4 ? GO:0000054 ... Q03195 22358840
    151973 3j16:C (7.2) BS01 rna ? GO:0000462 ... P0CX37 22358840
    151974 3j16:D (7.2) BS01 rna ? GO:0000462 ... P0CX31 22358840
    151975 3j16:E (7.2) BS01 rna ? GO:0002181 ... P0CX33 22358840
    151976 3j16:F (7.2) BS01 rna ? GO:0002181 ... P05738 22358840
    151977 3j16:G (7.2) BS01 rna ? GO:0000027 ... P05317 22358840
    151978 3j16:H (7.2) BS01 rna ? GO:0000027 ... P0CX53 22358840
    151979 3j16:I (7.2) BS01 rna ? GO:0002181 ... P0CX41 22358840
    151980 3j1f:A (6.2) BS01 ATP ? GO:0005524 ... Q877H2 23709365
    151981 3j1f:B (6.2) BS01 ATP ? GO:0005524 ... Q877H2 23709365
    151982 3j1f:C (6.2) BS01 ATP ? GO:0005524 ... Q877H2 23709365
    151983 3j1f:D (6.2) BS01 ATP ? GO:0005524 ... Q877H2 23709365
    151984 3j1f:E (6.2) BS01 ATP ? GO:0005524 ... Q877H2 23709365
    151985 3j1f:F (6.2) BS01 ATP ? GO:0005524 ... Q877H2 23709365
    151986 3j1f:G (6.2) BS01 ATP ? GO:0005524 ... Q877H2 23709365
    151987 3j1f:H (6.2) BS01 ATP ? GO:0005524 ... Q877H2 23709365
    151988 3j1f:I (6.2) BS01 ATP ? GO:0005524 ... Q877H2 23709365
    151989 3j1f:K (6.2) BS01 ATP ? GO:0005524 ... Q877H2 23709365
    151990 3j1f:L (6.2) BS01 ATP ? GO:0005524 ... Q877H2 23709365
    151991 3j1f:M (6.2) BS01 ATP ? GO:0005524 ... Q877H2 23709365
    151992 3j1f:N (6.2) BS01 ATP ? GO:0005524 ... Q877H2 23709365
    151993 3j1f:O (6.2) BS01 ATP ? GO:0005524 ... Q877H2 23709365
    151994 3j1f:P (6.2) BS01 ATP ? GO:0005524 ... Q877H2 23709365
    151995 3j1f:Q (6.2) BS01 ATP ? GO:0005524 ... Q877H2 23709365
    151996 3j1f:R (6.2) BS01 ATP ? GO:0005524 ... Q877H2 23709365
    151997 3j1f:S (6.2) BS01 ATP ? GO:0005524 ... Q877H2 23709365
    151998 3j1o:I (16.0) BS01 peptide ? GO:0003712 ... P32569 22579255
    151999 3j1o:J (16.0) BS01 peptide ? GO:0000122 ... P38304 22579255
    152000 3j2q:A (15.0) BS01 CU ? GO:0005507 ... P00451 23616213

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).