SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    152001 3j2q:A (15.0) BS02 CA ? GO:0005507 ... P00451 23616213
    152002 3j2q:B (15.0) BS01 CU ? GO:0005507 ... P00451 23616213
    152003 3j2t:A (9.5) BS01 ATP ? GO:0000166 ... O14727 23521171
    152004 3j2t:B (9.5) BS01 ATP ? GO:0000166 ... O14727 23521171
    152005 3j2t:C (9.5) BS01 ATP ? GO:0000166 ... O14727 23521171
    152006 3j2t:D (9.5) BS01 ATP ? GO:0000166 ... O14727 23521171
    152007 3j2t:E (9.5) BS01 ATP ? GO:0000166 ... O14727 23521171
    152008 3j2t:F (9.5) BS01 ATP ? GO:0000166 ... O14727 23521171
    152009 3j2t:G (9.5) BS01 ATP ? GO:0000166 ... O14727 23521171
    152010 3j2t:H (9.5) BS01 HEM ? GO:0005758 ... P62894 23521171
    152011 3j2t:I (9.5) BS01 HEM ? GO:0005758 ... P62894 23521171
    152012 3j2t:J (9.5) BS01 HEM ? GO:0005758 ... P62894 23521171
    152013 3j2t:K (9.5) BS01 HEM ? GO:0005758 ... P62894 23521171
    152014 3j2t:L (9.5) BS01 HEM ? GO:0005758 ... P62894 23521171
    152015 3j2t:M (9.5) BS01 HEM ? GO:0005758 ... P62894 23521171
    152016 3j2t:N (9.5) BS01 HEM ? GO:0005758 ... P62894 23521171
    152017 3j31:Q (4.5) BS01 peptide ? N/A Q6Q0L4 23520050
    152018 3j3v:0 (13.3) BS01 rna ? GO:0003735 ... O34687 23700310
    152019 3j3v:2 (13.3) BS01 rna ? GO:0003735 ... P05647 23700310
    152020 3j3v:5 (13.3) BS01 rna ? GO:0003723 ... Q06797 23700310
    152021 3j3v:6 (13.3) BS01 rna ? GO:0003735 ... Q06796 23700310
    152022 3j3v:C (13.3) BS01 rna ? GO:0002181 ... P42919 23700310
    152023 3j3v:D (13.3) BS01 rna ? GO:0003735 ... P42920 23700310
    152024 3j3v:E (13.3) BS01 rna ? GO:0003735 ... P42921 23700310
    152025 3j3v:F (13.3) BS01 rna ? GO:0000049 ... P12877 23700310
    152026 3j3v:F (13.3) BS02 rna ? GO:0000049 ... P12877 23700310
    152027 3j3v:G (13.3) BS01 rna ? GO:0002181 ... P46898 23700310
    152028 3j3v:J (13.3) BS01 rna ? GO:0003729 ... P70974 23700310
    152029 3j3v:K (13.3) BS01 rna ? GO:0003735 ... P12875 23700310
    152030 3j3v:L (13.3) BS01 rna ? GO:0003735 ... P19946 23700310
    152031 3j3v:N (13.3) BS01 rna ? GO:0003735 ... P20277 23700310
    152032 3j3v:O (13.3) BS01 rna ? GO:0003735 ... P46899 23700310
    152033 3j3v:O (13.3) BS02 rna ? GO:0003735 ... P46899 23700310
    152034 3j3v:P (13.3) BS01 rna ? GO:0003735 ... O31742 23700310
    152035 3j3v:Q (13.3) BS01 rna ? GO:0000027 ... P55873 23700310
    152036 3j3v:R (13.3) BS01 rna ? GO:0003723 ... P26908 23700310
    152037 3j3v:S (13.3) BS01 rna ? GO:0003735 ... P42060 23700310
    152038 3j3v:T (13.3) BS01 rna ? GO:0003735 ... P42924 23700310
    152039 3j3v:U (13.3) BS01 rna ? GO:0003723 ... P0CI78 23700310
    152040 3j3v:X (13.3) BS01 rna ? GO:0003735 ... P12873 23700310
    152041 3j3v:Y (13.3) BS01 rna ? GO:0003735 ... P19947 23700310
    152042 3j3w:0 (10.7) BS01 rna ? GO:0003735 ... O34687 23700310
    152043 3j3w:2 (10.7) BS01 rna ? GO:0003735 ... P05647 23700310
    152044 3j3w:5 (10.7) BS01 rna ? GO:0003723 ... Q06797 23700310
    152045 3j3w:6 (10.7) BS01 rna ? GO:0003735 ... Q06796 23700310
    152046 3j3w:C (10.7) BS01 rna ? GO:0002181 ... P42919 23700310
    152047 3j3w:D (10.7) BS01 rna ? GO:0003735 ... P42920 23700310
    152048 3j3w:E (10.7) BS01 rna ? GO:0003735 ... P42921 23700310
    152049 3j3w:G (10.7) BS01 rna ? GO:0002181 ... P46898 23700310
    152050 3j3w:J (10.7) BS01 rna ? GO:0003729 ... P70974 23700310
    152051 3j3w:K (10.7) BS01 rna ? GO:0003735 ... P12875 23700310
    152052 3j3w:L (10.7) BS01 rna ? GO:0003735 ... P19946 23700310
    152053 3j3w:N (10.7) BS01 rna ? GO:0003735 ... P20277 23700310
    152054 3j3w:P (10.7) BS01 rna ? GO:0003735 ... O31742 23700310
    152055 3j3w:Q (10.7) BS01 rna ? GO:0000027 ... P55873 23700310
    152056 3j3w:R (10.7) BS01 rna ? GO:0003723 ... P26908 23700310
    152057 3j3w:S (10.7) BS01 rna ? GO:0003735 ... P42060 23700310
    152058 3j3w:T (10.7) BS01 rna ? GO:0003735 ... P42924 23700310
    152059 3j3w:U (10.7) BS01 rna ? GO:0003723 ... P0CI78 23700310
    152060 3j3w:X (10.7) BS01 rna ? GO:0003735 ... P12873 23700310
    152061 3j41:E (25.0) BS01 CA ? GO:0000922 ... P0DP23 23893133
    152062 3j41:E (25.0) BS02 CA ? GO:0000922 ... P0DP23 23893133
    152063 3j41:E (25.0) BS03 CA ? GO:0000922 ... P0DP23 23893133
    152064 3j41:E (25.0) BS04 CA ? GO:0000922 ... P0DP23 23893133
    152065 3j41:F (25.0) BS01 CA ? GO:0000922 ... P0DP23 23893133
    152066 3j41:F (25.0) BS02 CA ? GO:0000922 ... P0DP23 23893133
    152067 3j41:F (25.0) BS03 CA ? GO:0000922 ... P0DP23 23893133
    152068 3j41:F (25.0) BS04 CA ? GO:0000922 ... P0DP23 23893133
    152069 3j45:T (9.5) BS01 rna ? GO:0000027 ... P0ADZ0 24153188
    152070 3j45:T (9.5) BS02 rna ? GO:0000027 ... P0ADZ0 24153188
    152071 3j45:U (9.5) BS01 rna ? GO:0000027 ... P60624 24153188
    152072 3j45:Y (9.5) BS01 rna ? GO:0000027 ... P0A7M6 24153188
    152073 3j45:y (9.5) BS01 rna ? GO:0005048 ... P0AGA2 24153188
    152074 3j45:y (9.5) BS02 rna ? GO:0005048 ... P0AGA2 24153188
    152075 3j46:5 (10.1) BS01 rna ? GO:0000027 ... P0A7L0 24153188
    152076 3j46:T (10.1) BS01 rna ? GO:0000027 ... P0ADZ0 24153188
    152077 3j46:T (10.1) BS02 rna ? GO:0000027 ... P0ADZ0 24153188
    152078 3j46:U (10.1) BS01 rna ? GO:0000027 ... P60624 24153188
    152079 3j46:Y (10.1) BS01 rna ? GO:0000027 ... P0A7M6 24153188
    152080 3j46:y (10.1) BS01 rna ? GO:0005048 ... P0AGA2 24153188
    152081 3j46:y (10.1) BS02 rna ? GO:0005048 ... P0AGA2 24153188
    152082 3j47:U (7.4) BS01 peptide ? N/A Q08723 23911091
    152083 3j47:U (7.4) BS02 peptide ? N/A Q08723 23911091
    152084 3j47:U (7.4) BS03 peptide ? N/A Q08723 23911091
    152085 3j47:U (7.4) BS04 peptide ? N/A Q08723 23911091
    152086 3j47:U (7.4) BS05 peptide ? N/A Q08723 23911091
    152087 3j47:V (7.4) BS01 peptide 3.4.19.12 N/A P43588 23911091
    152088 3j4k:A (8.0) BS01 ADP 3.6.4.- GO:0000287 ... P68135 24021812
    152089 3j4k:B (8.0) BS01 ADP 3.6.4.- GO:0000287 ... P68135 24021812
    152090 3j4k:C (8.0) BS01 ADP 3.6.4.- GO:0000287 ... P68135 24021812
    152091 3j4k:D (8.0) BS01 ADP 3.6.4.- GO:0000287 ... P68135 24021812
    152092 3j4k:E (8.0) BS01 ADP 3.6.4.- GO:0000287 ... P68135 24021812
    152093 3j4p:A (4.8) BS01 YYJ ? GO:0005198 ... P03135 24036405
    152094 3j4s:A (6.8) BS01 GDP 3.6.5.- GO:0003924 ... Q8KNP3 24550513
    152095 3j5l:0 (6.6) BS01 rna ? GO:0000027 ... P0A7N4 24662426
    152096 3j5l:1 (6.6) BS01 rna ? GO:0000027 ... P0A7N9 24662426
    152097 3j5l:2 (6.6) BS01 rna ? GO:0002181 ... P0A7P5 24662426
    152098 3j5l:3 (6.6) BS01 rna ? GO:0002181 ... P0A7Q1 24662426
    152099 3j5l:4 (6.6) BS01 rna ? GO:0002181 ... P0A7Q6 24662426
    152100 3j5l:C (6.6) BS01 rna ? GO:0000027 ... P60422 24662426
    152101 3j5l:D (6.6) BS01 rna ? GO:0000027 ... P60438 24662426
    152102 3j5l:E (6.6) BS01 rna ? GO:0001070 ... P60723 24662426
    152103 3j5l:F (6.6) BS01 rna ? GO:0000027 ... P62399 24662426
    152104 3j5l:F (6.6) BS02 rna ? GO:0000027 ... P62399 24662426
    152105 3j5l:G (6.6) BS01 rna ? GO:0000027 ... P0AG55 24662426
    152106 3j5l:H (6.6) BS01 rna ? GO:0003735 ... P0A7R1 24662426
    152107 3j5l:I (6.6) BS01 rna ? GO:0000027 ... P0A7J7 24662426
    152108 3j5l:J (6.6) BS01 rna ? GO:0002181 ... P0AA10 24662426
    152109 3j5l:K (6.6) BS01 rna ? GO:0002181 ... P0ADY3 24662426
    152110 3j5l:L (6.6) BS01 rna ? GO:0002181 ... P02413 24662426
    152111 3j5l:M (6.6) BS01 rna ? GO:0000027 ... P0ADY7 24662426
    152112 3j5l:M (6.6) BS02 rna ? GO:0000027 ... P0ADY7 24662426
    152113 3j5l:N (6.6) BS01 rna ? GO:0000027 ... P0AG44 24662426
    152114 3j5l:O (6.6) BS01 rna ? GO:0002181 ... P0C018 24662426
    152115 3j5l:O (6.6) BS02 rna ? GO:0002181 ... P0C018 24662426
    152116 3j5l:P (6.6) BS01 rna ? GO:0000027 ... P0A7K6 24662426
    152117 3j5l:Q (6.6) BS01 rna ? GO:0000027 ... P0A7L3 24662426
    152118 3j5l:R (6.6) BS01 rna ? GO:0002181 ... P0AG48 24662426
    152119 3j5l:S (6.6) BS01 rna ? GO:0002181 ... P61175 24662426
    152120 3j5l:T (6.6) BS01 rna ? GO:0000027 ... P0ADZ0 24662426
    152121 3j5l:U (6.6) BS01 rna ? GO:0000027 ... P60624 24662426
    152122 3j5l:V (6.6) BS01 rna ? GO:0000027 ... P68919 24662426
    152123 3j5l:V (6.6) BS02 rna ? GO:0000027 ... P68919 24662426
    152124 3j5l:W (6.6) BS01 rna ? GO:0000027 ... P0A7L8 24662426
    152125 3j5l:X (6.6) BS01 rna ? GO:0000027 ... P0A7M2 24662426
    152126 3j5l:Y (6.6) BS01 rna ? GO:0000027 ... P0A7M6 24662426
    152127 3j5l:Z (6.6) BS01 rna ? GO:0000027 ... P0AG51 24662426
    152128 3j5l:Z (6.6) BS02 rna ? GO:0000027 ... P0AG51 24662426
    152129 3j5s:D (7.5) BS01 rna 3.6.1.- GO:0000049 ... P0A9W3 24389465
    152130 3j5s:D (7.5) BS02 rna 3.6.1.- GO:0000049 ... P0A9W3 24389465
    152131 3j5s:D (7.5) BS03 rna 3.6.1.- GO:0000049 ... P0A9W3 24389465
    152132 3j5s:F (7.5) BS01 rna ? GO:0000027 ... P0A7L0 24389465
    152133 3j5s:I (7.5) BS01 rna ? GO:0003723 ... P02359 24389465
    152134 3j5v:a (7.1) BS01 GDP 3.6.5.- GO:0000166 ... B3FK34 24631461
    152135 3j5y:A (9.7) BS01 rna ? GO:0002184 ... P62495 24335085
    152136 3j5y:A (9.7) BS02 rna ? GO:0002184 ... P62495 24335085
    152137 3j6b:0 (3.2) BS01 rna ? GO:0003735 ... O14464 24675956
    152138 3j6b:0 (3.2) BS02 ZN ? GO:0003735 ... O14464 24675956
    152139 3j6b:1 (3.2) BS01 rna ? GO:0003735 ... Q06678 24675956
    152140 3j6b:2 (3.2) BS01 rna ? GO:0003735 ... P36527 24675956
    152141 3j6b:3 (3.2) BS01 rna ? GO:0003735 ... P36526 24675956
    152142 3j6b:4 (3.2) BS01 rna ? GO:0003735 ... Q06090 24675956
    152143 3j6b:5 (3.2) BS01 rna ? GO:0003725 ... P36516 24675956
    152144 3j6b:6 (3.2) BS01 rna ? GO:0003735 ... P36528 24675956
    152145 3j6b:7 (3.2) BS01 rna ? GO:0003735 ... P25642 24675956
    152146 3j6b:8 (3.2) BS01 rna ? GO:0003735 ... Q02204 24675956
    152147 3j6b:9 (3.2) BS01 rna ? GO:0003735 ... P36523 24675956
    152148 3j6b:B (3.2) BS01 rna ? GO:0003723 ... P32611 24675956
    152149 3j6b:C (3.2) BS01 rna ? GO:0003735 ... P31334 24675956
    152150 3j6b:D (3.2) BS01 rna ? GO:0003735 ... P51998 24675956
    152151 3j6b:E (3.2) BS01 rna ? GO:0003723 ... P36519 24675956
    152152 3j6b:F (3.2) BS01 rna ? GO:0003735 ... P32904 24675956
    152153 3j6b:G (3.2) BS01 rna ? GO:0003735 ... P53724 24675956
    152154 3j6b:H (3.2) BS01 rna ? GO:0003729 ... Q12487 24675956
    152155 3j6b:I (3.2) BS01 rna ? GO:0003735 ... P35996 24675956
    152156 3j6b:J (3.2) BS01 rna ? GO:0003735 ... P36520 24675956
    152157 3j6b:K (3.2) BS01 rna ? GO:0003735 ... P38064 24675956
    152158 3j6b:L (3.2) BS01 rna ? GO:0003735 ... P22353 24675956
    152159 3j6b:M (3.2) BS01 rna ? GO:0003735 ... P25626 24675956
    152160 3j6b:N (3.2) BS01 rna ? GO:0003735 ... P40858 24675956
    152161 3j6b:O (3.2) BS01 rna ? GO:0003735 ... P53881 24675956
    152162 3j6b:P (3.2) BS01 rna ? GO:0003735 ... P32387 24675956
    152163 3j6b:Q (3.2) BS01 rna ? GO:0003735 ... P36534 24675956
    152164 3j6b:R (3.2) BS01 rna ? GO:0003735 ... P12687 24675956
    152165 3j6b:S (3.2) BS01 rna ? GO:0003735 ... P36525 24675956
    152166 3j6b:T (3.2) BS01 rna ? GO:0003735 ... P36517 24675956
    152167 3j6b:U (3.2) BS01 rna ? GO:0003735 ... P20084 24675956
    152168 3j6b:V (3.2) BS01 rna ? GO:0003735 ... P36531 24675956
    152169 3j6b:W (3.2) BS01 rna ? GO:0003735 ... P25348 24675956
    152170 3j6b:W (3.2) BS02 ZN ? GO:0003735 ... P25348 24675956
    152171 3j6b:X (3.2) BS01 rna ? GO:0003735 ... P36533 24675956
    152172 3j6b:Y (3.2) BS01 rna ? GO:0003735 ... Q04598 24675956
    152173 3j6b:Z (3.2) BS01 rna ? GO:0003735 ... P53921 24675956
    152174 3j6b:a (3.2) BS01 rna ? GO:0003735 ... P22354 24675956
    152175 3j6b:b (3.2) BS01 rna ? GO:0003735 ... P23369 24675956
    152176 3j6b:c (3.2) BS01 rna ? GO:0003735 ... P14063 24675956
    152177 3j6b:d (3.2) BS01 rna ? GO:0000150 ... Q06630 24675956
    152178 3j6e:A (4.7) BS01 GTP 3.6.5.- GO:0000226 ... P02550 24855948
    152179 3j6e:B (4.7) BS01 G2P ? GO:0000226 ... P02554 24855948
    152180 3j6e:C (4.7) BS01 GTP 3.6.5.- GO:0000226 ... P02550 24855948
    152181 3j6e:D (4.7) BS01 G2P ? GO:0000226 ... P02554 24855948
    152182 3j6e:E (4.7) BS01 GTP 3.6.5.- GO:0000226 ... P02550 24855948
    152183 3j6e:F (4.7) BS01 G2P ? GO:0000226 ... P02554 24855948
    152184 3j6e:G (4.7) BS01 GTP 3.6.5.- GO:0000226 ... P02550 24855948
    152185 3j6e:H (4.7) BS01 G2P ? GO:0000226 ... P02554 24855948
    152186 3j6e:I (4.7) BS01 GTP 3.6.5.- GO:0000226 ... P02550 24855948
    152187 3j6e:J (4.7) BS01 G2P ? GO:0000226 ... P02554 24855948
    152188 3j6e:K (4.7) BS01 GTP 3.6.5.- GO:0000226 ... P02550 24855948
    152189 3j6e:L (4.7) BS01 G2P ? GO:0000226 ... P02554 24855948
    152190 3j6e:M (4.7) BS01 GTP 3.6.5.- GO:0000226 ... P02550 24855948
    152191 3j6e:N (4.7) BS01 G2P ? GO:0000226 ... P02554 24855948
    152192 3j6e:O (4.7) BS01 GTP 3.6.5.- GO:0000226 ... P02550 24855948
    152193 3j6e:P (4.7) BS01 G2P ? GO:0000226 ... P02554 24855948
    152194 3j6e:Q (4.7) BS01 GTP 3.6.5.- GO:0000226 ... P02550 24855948
    152195 3j6e:R (4.7) BS01 G2P ? GO:0000226 ... P02554 24855948
    152196 3j6f:A (4.9) BS01 GTP 3.6.5.- GO:0000226 ... P02550 24855948
    152197 3j6f:B (4.9) BS01 GDP ? GO:0000226 ... P02554 24855948
    152198 3j6f:C (4.9) BS01 GTP 3.6.5.- GO:0000226 ... P02550 24855948
    152199 3j6f:D (4.9) BS01 GDP ? GO:0000226 ... P02554 24855948
    152200 3j6f:E (4.9) BS01 GTP 3.6.5.- GO:0000226 ... P02550 24855948

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).