SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    152201 3j6f:F (4.9) BS01 GDP ? GO:0000226 ... P02554 24855948
    152202 3j6f:G (4.9) BS01 GTP 3.6.5.- GO:0000226 ... P02550 24855948
    152203 3j6f:H (4.9) BS01 GDP ? GO:0000226 ... P02554 24855948
    152204 3j6f:I (4.9) BS01 GTP 3.6.5.- GO:0000226 ... P02550 24855948
    152205 3j6f:J (4.9) BS01 GDP ? GO:0000226 ... P02554 24855948
    152206 3j6f:K (4.9) BS01 GTP 3.6.5.- GO:0000226 ... P02550 24855948
    152207 3j6f:L (4.9) BS01 GDP ? GO:0000226 ... P02554 24855948
    152208 3j6f:M (4.9) BS01 GTP 3.6.5.- GO:0000226 ... P02550 24855948
    152209 3j6f:N (4.9) BS01 GDP ? GO:0000226 ... P02554 24855948
    152210 3j6f:O (4.9) BS01 GTP 3.6.5.- GO:0000226 ... P02550 24855948
    152211 3j6f:P (4.9) BS01 GDP ? GO:0000226 ... P02554 24855948
    152212 3j6f:Q (4.9) BS01 GTP 3.6.5.- GO:0000226 ... P02550 24855948
    152213 3j6f:R (4.9) BS01 GDP ? GO:0000226 ... P02554 24855948
    152214 3j6g:A (5.5) BS01 GTP 3.6.5.- GO:0000226 ... P02550 24855948
    152215 3j6g:B (5.5) BS01 GDP ? GO:0000226 ... P02554 24855948
    152216 3j6g:B (5.5) BS02 TA1 ? GO:0000226 ... P02554 24855948 BindingDB: EC50=520nM
    152217 3j6g:C (5.5) BS01 GTP 3.6.5.- GO:0000226 ... P02550 24855948
    152218 3j6g:D (5.5) BS01 GDP ? GO:0000226 ... P02554 24855948
    152219 3j6g:D (5.5) BS02 TA1 ? GO:0000226 ... P02554 24855948 BindingDB: EC50=520nM
    152220 3j6g:E (5.5) BS01 GTP 3.6.5.- GO:0000226 ... P02550 24855948
    152221 3j6g:F (5.5) BS01 GDP ? GO:0000226 ... P02554 24855948
    152222 3j6g:F (5.5) BS02 TA1 ? GO:0000226 ... P02554 24855948 BindingDB: EC50=520nM
    152223 3j6g:G (5.5) BS01 GTP 3.6.5.- GO:0000226 ... P02550 24855948
    152224 3j6g:H (5.5) BS01 GDP ? GO:0000226 ... P02554 24855948
    152225 3j6g:H (5.5) BS02 TA1 ? GO:0000226 ... P02554 24855948 BindingDB: EC50=520nM
    152226 3j6g:I (5.5) BS01 GTP 3.6.5.- GO:0000226 ... P02550 24855948
    152227 3j6g:J (5.5) BS01 GDP ? GO:0000226 ... P02554 24855948
    152228 3j6g:J (5.5) BS02 TA1 ? GO:0000226 ... P02554 24855948 BindingDB: EC50=520nM
    152229 3j6g:K (5.5) BS01 GTP 3.6.5.- GO:0000226 ... P02550 24855948
    152230 3j6g:L (5.5) BS01 GDP ? GO:0000226 ... P02554 24855948
    152231 3j6g:L (5.5) BS02 TA1 ? GO:0000226 ... P02554 24855948 BindingDB: EC50=520nM
    152232 3j6g:M (5.5) BS01 GTP 3.6.5.- GO:0000226 ... P02550 24855948
    152233 3j6g:N (5.5) BS01 GDP ? GO:0000226 ... P02554 24855948
    152234 3j6g:N (5.5) BS02 TA1 ? GO:0000226 ... P02554 24855948 BindingDB: EC50=520nM
    152235 3j6g:O (5.5) BS01 GTP 3.6.5.- GO:0000226 ... P02550 24855948
    152236 3j6g:P (5.5) BS01 GDP ? GO:0000226 ... P02554 24855948
    152237 3j6g:P (5.5) BS02 TA1 ? GO:0000226 ... P02554 24855948 BindingDB: EC50=520nM
    152238 3j6g:Q (5.5) BS01 GTP 3.6.5.- GO:0000226 ... P02550 24855948
    152239 3j6g:R (5.5) BS01 GDP ? GO:0000226 ... P02554 24855948
    152240 3j6g:R (5.5) BS02 TA1 ? GO:0000226 ... P02554 24855948 BindingDB: EC50=520nM
    152241 3j6h:A (8.1) BS01 GTP 3.6.5.- GO:0000226 ... P02550 25777528
    152242 3j6h:B (8.1) BS01 MG ? GO:0000226 ... P02554 25777528
    152243 3j6h:B (8.1) BS02 G2P ? GO:0000226 ... P02554 25777528
    152244 3j6p:A (8.2) BS01 GTP 3.6.5.- GO:0000226 ... P02550 25583999
    152245 3j6p:B (8.2) BS01 GDP ? GO:0000226 ... P02554 25583999
    152246 3j6p:B (8.2) BS02 TA1 ? GO:0000226 ... P02554 25583999 BindingDB: EC50=520nM
    152247 3j6q:A (3.8) BS01 SAH ? GO:0000166 ... Q914N6 24690366
    152248 3j6q:A (3.8) BS02 SAH ? GO:0000166 ... Q914N6 24690366
    152249 3j6q:B (3.8) BS01 SAH ? GO:0000166 ... Q914N6 24690366
    152250 3j6q:B (3.8) BS02 SAH ? GO:0000166 ... Q914N6 24690366
    152251 3j6q:C (3.8) BS01 SAH ? GO:0000166 ... Q914N6 24690366
    152252 3j6q:C (3.8) BS02 SAH ? GO:0000166 ... Q914N6 24690366
    152253 3j6q:D (3.8) BS01 SAH ? GO:0000166 ... Q914N6 24690366
    152254 3j6q:D (3.8) BS02 SAH ? GO:0000166 ... Q914N6 24690366
    152255 3j6q:E (3.8) BS01 SAH ? GO:0000166 ... Q914N6 24690366
    152256 3j6q:E (3.8) BS02 SAH ? GO:0000166 ... Q914N6 24690366
    152257 3j6x:10 (6.1) BS01 rna ? GO:0000054 ... Q08745 24927574
    152258 3j6x:11 (6.1) BS01 rna ? GO:0000028 ... P0CX47 24927574
    152259 3j6x:12 (6.1) BS01 rna ? GO:0000028 ... P48589 24927574
    152260 3j6x:13 (6.1) BS01 rna ? GO:0000462 ... P05756 24927574
    152261 3j6x:14 (6.1) BS01 rna ? GO:0000028 ... P06367 24927574
    152262 3j6x:15 (6.1) BS01 rna ? GO:0000054 ... Q01855 24927574
    152263 3j6x:16 (6.1) BS01 rna ? GO:0000462 ... P0CX51 24927574
    152264 3j6x:17 (6.1) BS01 rna ? GO:0000028 ... P02407 24927574
    152265 3j6x:18 (6.1) BS01 rna ? GO:0000054 ... P0CX55 24927574
    152266 3j6x:19 (6.1) BS01 rna ? GO:0000054 ... P07280 24927574
    152267 3j6x:20 (6.1) BS01 rna ? GO:0000462 ... P38701 24927574
    152268 3j6x:22 (6.1) BS01 rna ? GO:0002181 ... P0C0W1 24927574
    152269 3j6x:23 (6.1) BS01 rna ? GO:0000462 ... P0CX29 24927574
    152270 3j6x:24 (6.1) BS01 rna ? GO:0000462 ... P0CX31 24927574
    152271 3j6x:25 (6.1) BS01 rna ? GO:0002181 ... Q3E792 24927574
    152272 3j6x:26 (6.1) BS01 rna ? GO:0000054 ... P39938 24927574
    152273 3j6x:27 (6.1) BS01 rna ? GO:0000028 ... P35997 24927574
    152274 3j6x:28 (6.1) BS01 rna ? GO:0000028 ... Q3E7X9 24927574
    152275 3j6x:29 (6.1) BS01 rna ? GO:0002181 ... P41057 24927574
    152276 3j6x:30 (6.1) BS01 rna ? GO:0002181 ... P0CX33 24927574
    152277 3j6x:31 (6.1) BS01 rna ? GO:0000028 ... P05759 24927574
    152278 3j6x:50 (6.1) BS01 rna ? GO:0000027 ... P41805 24927574
    152279 3j6x:50 (6.1) BS02 rna ? GO:0000027 ... P41805 24927574
    152280 3j6x:51 (6.1) BS01 rna ? GO:0000027 ... P0C0W9 24927574
    152281 3j6x:51 (6.1) BS02 rna ? GO:0000027 ... P0C0W9 24927574
    152282 3j6x:53 (6.1) BS01 rna ? GO:0002181 ... Q12690 24927574
    152283 3j6x:53 (6.1) BS02 rna ? GO:0002181 ... Q12690 24927574
    152284 3j6x:54 (6.1) BS01 rna ? GO:0000027 ... P36105 24927574
    152285 3j6x:55 (6.1) BS01 rna ? GO:0000470 ... P05748 24927574
    152286 3j6x:55 (6.1) BS02 rna ? GO:0000470 ... P05748 24927574
    152287 3j6x:56 (6.1) BS01 rna ? GO:0000470 ... P26784 24927574
    152288 3j6x:57 (6.1) BS01 rna ? GO:0000448 ... P05740 24927574
    152289 3j6x:57 (6.1) BS02 rna ? GO:0000448 ... P05740 24927574
    152290 3j6x:58 (6.1) BS01 rna ? GO:0002181 ... P0CX49 24927574
    152291 3j6x:59 (6.1) BS01 rna ? GO:0002181 ... P0CX82 24927574
    152292 3j6x:59 (6.1) BS02 rna ? GO:0002181 ... P0CX82 24927574
    152293 3j6x:60 (6.1) BS01 rna ? GO:0002181 ... P0CX23 24927574
    152294 3j6x:60 (6.1) BS02 rna ? GO:0002181 ... P0CX23 24927574
    152295 3j6x:61 (6.1) BS01 rna ? GO:0002181 ... Q02753 24927574
    152296 3j6x:61 (6.1) BS02 rna ? GO:0002181 ... Q02753 24927574
    152297 3j6x:62 (6.1) BS01 rna ? GO:0002181 ... P05749 24927574
    152298 3j6x:63 (6.1) BS01 rna ? GO:0002181 ... P0CX41 24927574
    152299 3j6x:64 (6.1) BS01 rna ? GO:0002181 ... P04449 24927574
    152300 3j6x:65 (6.1) BS01 rna ? GO:0000027 ... P04456 24927574
    152301 3j6x:65 (6.1) BS02 rna ? GO:0000027 ... P04456 24927574
    152302 3j6x:66 (6.1) BS01 rna ? GO:0002181 ... P05743 24927574
    152303 3j6x:66 (6.1) BS02 rna ? GO:0002181 ... P05743 24927574
    152304 3j6x:67 (6.1) BS01 rna ? GO:0002181 ... P0C2H6 24927574
    152305 3j6x:68 (6.1) BS01 rna ? GO:0002181 ... P02406 24927574
    152306 3j6x:69 (6.1) BS01 rna ? GO:0002181 ... P05747 24927574
    152307 3j6x:70 (6.1) BS01 rna ? GO:0002181 ... P14120 24927574
    152308 3j6x:71 (6.1) BS01 rna ? GO:0002181 ... P0C2H8 24927574
    152309 3j6x:72 (6.1) BS01 rna ? GO:0002181 ... P38061 24927574
    152310 3j6x:73 (6.1) BS01 rna ? GO:0000027 ... P05744 24927574
    152311 3j6x:74 (6.1) BS01 rna ? GO:0002181 ... P87262 24927574
    152312 3j6x:75 (6.1) BS01 rna ? GO:0000463 ... P0CX84 24927574
    152313 3j6x:75 (6.1) BS02 rna ? GO:0000463 ... P0CX84 24927574
    152314 3j6x:76 (6.1) BS01 rna ? GO:0000470 ... P05745 24927574
    152315 3j6x:77 (6.1) BS01 rna ? GO:0000448 ... P49166 24927574
    152316 3j6x:77 (6.1) BS02 rna ? GO:0000448 ... P49166 24927574
    152317 3j6x:78 (6.1) BS01 rna ? GO:0002181 ... P49167 24927574
    152318 3j6x:79 (6.1) BS01 rna ? GO:0002181 ... P04650 24927574
    152319 3j6x:79 (6.1) BS02 rna ? GO:0002181 ... P04650 24927574
    152320 3j6x:80 (6.1) BS01 rna ? GO:0000027 ... P0CH08 24927574
    152321 3j6x:82 (6.1) BS01 rna ? GO:0002181 ... P0CX27 24927574
    152322 3j6x:83 (6.1) BS01 rna ? GO:0002181 ... P0CX25 24927574
    152323 3j6x:L1 (6.1) BS01 rna ? GO:0000055 ... P0CX43 24927574
    152324 3j6x:L2 (6.1) BS01 rna ? GO:0002181 ... P0CX45 24927574
    152325 3j6x:L2 (6.1) BS02 rna ? GO:0002181 ... P0CX45 24927574
    152326 3j6x:L3 (6.1) BS01 rna ? GO:0000027 ... P14126 24927574
    152327 3j6x:L4 (6.1) BS01 rna ? GO:0002181 ... P10664 24927574
    152328 3j6x:L5 (6.1) BS01 rna ? GO:0000027 ... P26321 24927574
    152329 3j6x:L5 (6.1) BS02 rna ? GO:0000027 ... P26321 24927574
    152330 3j6x:L6 (6.1) BS01 rna ? GO:0000027 ... Q02326 24927574
    152331 3j6x:L7 (6.1) BS01 rna ? GO:0000463 ... P05737 24927574
    152332 3j6x:L7 (6.1) BS02 rna ? GO:0000463 ... P05737 24927574
    152333 3j6x:L8 (6.1) BS01 rna ? GO:0000470 ... P17076 24927574
    152334 3j6x:L8 (6.1) BS02 rna ? GO:0000470 ... P17076 24927574
    152335 3j6x:L9 (6.1) BS01 rna ? GO:0002181 ... P05738 24927574
    152336 3j6x:RA (6.1) BS01 rna ? GO:0001965 ... P38011 24927574
    152337 3j6x:S0 (6.1) BS01 rna ? GO:0000028 ... P32905 24927574
    152338 3j6x:S1 (6.1) BS01 rna ? GO:0000462 ... P33442 24927574
    152339 3j6x:S2 (6.1) BS01 rna ? GO:0000054 ... P25443 24927574
    152340 3j6x:S3 (6.1) BS01 rna ? GO:0000054 ... P05750 24927574
    152341 3j6x:S4 (6.1) BS01 rna ? GO:0002181 ... P0CX35 24927574
    152342 3j6x:S5 (6.1) BS01 rna ? GO:0000054 ... P26783 24927574
    152343 3j6x:S6 (6.1) BS01 rna ? GO:0000462 ... P0CX37 24927574
    152344 3j6x:S7 (6.1) BS01 rna ? GO:0002181 ... P26786 24927574
    152345 3j6x:S8 (6.1) BS01 rna ? GO:0000462 ... P0CX39 24927574
    152346 3j6x:S8 (6.1) BS02 rna ? GO:0000462 ... P0CX39 24927574
    152347 3j6x:S9 (6.1) BS01 rna ? GO:0000462 ... O13516 24927574
    152348 3j6y:10 (6.1) BS01 rna ? GO:0000054 ... Q08745 24927574
    152349 3j6y:11 (6.1) BS01 rna ? GO:0000028 ... P0CX47 24927574
    152350 3j6y:12 (6.1) BS01 rna ? GO:0000028 ... P48589 24927574
    152351 3j6y:13 (6.1) BS01 rna ? GO:0000462 ... P05756 24927574
    152352 3j6y:14 (6.1) BS01 rna ? GO:0000028 ... P06367 24927574
    152353 3j6y:15 (6.1) BS01 rna ? GO:0000054 ... Q01855 24927574
    152354 3j6y:16 (6.1) BS01 rna ? GO:0000462 ... P0CX51 24927574
    152355 3j6y:17 (6.1) BS01 rna ? GO:0000028 ... P02407 24927574
    152356 3j6y:18 (6.1) BS01 rna ? GO:0000054 ... P0CX55 24927574
    152357 3j6y:19 (6.1) BS01 rna ? GO:0000054 ... P07280 24927574
    152358 3j6y:20 (6.1) BS01 rna ? GO:0000462 ... P38701 24927574
    152359 3j6y:22 (6.1) BS01 rna ? GO:0002181 ... P0C0W1 24927574
    152360 3j6y:23 (6.1) BS01 rna ? GO:0000462 ... P0CX29 24927574
    152361 3j6y:24 (6.1) BS01 rna ? GO:0000462 ... P0CX31 24927574
    152362 3j6y:25 (6.1) BS01 rna ? GO:0002181 ... Q3E792 24927574
    152363 3j6y:26 (6.1) BS01 rna ? GO:0000054 ... P39938 24927574
    152364 3j6y:27 (6.1) BS01 rna ? GO:0000028 ... P35997 24927574
    152365 3j6y:28 (6.1) BS01 rna ? GO:0000028 ... Q3E7X9 24927574
    152366 3j6y:29 (6.1) BS01 rna ? GO:0002181 ... P41057 24927574
    152367 3j6y:30 (6.1) BS01 rna ? GO:0002181 ... P0CX33 24927574
    152368 3j6y:31 (6.1) BS01 rna ? GO:0000028 ... P05759 24927574
    152369 3j6y:50 (6.1) BS01 rna ? GO:0000027 ... P41805 24927574
    152370 3j6y:50 (6.1) BS02 rna ? GO:0000027 ... P41805 24927574
    152371 3j6y:51 (6.1) BS01 rna ? GO:0000027 ... P0C0W9 24927574
    152372 3j6y:51 (6.1) BS02 rna ? GO:0000027 ... P0C0W9 24927574
    152373 3j6y:53 (6.1) BS01 rna ? GO:0002181 ... Q12690 24927574
    152374 3j6y:54 (6.1) BS01 rna ? GO:0000027 ... P36105 24927574
    152375 3j6y:55 (6.1) BS01 rna ? GO:0000470 ... P05748 24927574
    152376 3j6y:55 (6.1) BS02 rna ? GO:0000470 ... P05748 24927574
    152377 3j6y:56 (6.1) BS01 rna ? GO:0000470 ... P26784 24927574
    152378 3j6y:57 (6.1) BS01 rna ? GO:0000448 ... P05740 24927574
    152379 3j6y:57 (6.1) BS02 rna ? GO:0000448 ... P05740 24927574
    152380 3j6y:58 (6.1) BS01 rna ? GO:0002181 ... P0CX49 24927574
    152381 3j6y:59 (6.1) BS01 rna ? GO:0002181 ... P0CX82 24927574
    152382 3j6y:59 (6.1) BS02 rna ? GO:0002181 ... P0CX82 24927574
    152383 3j6y:60 (6.1) BS01 rna ? GO:0002181 ... P0CX23 24927574
    152384 3j6y:60 (6.1) BS02 rna ? GO:0002181 ... P0CX23 24927574
    152385 3j6y:61 (6.1) BS01 rna ? GO:0002181 ... Q02753 24927574
    152386 3j6y:61 (6.1) BS02 rna ? GO:0002181 ... Q02753 24927574
    152387 3j6y:62 (6.1) BS01 rna ? GO:0002181 ... P05749 24927574
    152388 3j6y:63 (6.1) BS01 rna ? GO:0002181 ... P0CX41 24927574
    152389 3j6y:63 (6.1) BS02 rna ? GO:0002181 ... P0CX41 24927574
    152390 3j6y:64 (6.1) BS01 rna ? GO:0002181 ... P04449 24927574
    152391 3j6y:65 (6.1) BS01 rna ? GO:0000027 ... P04456 24927574
    152392 3j6y:65 (6.1) BS02 rna ? GO:0000027 ... P04456 24927574
    152393 3j6y:66 (6.1) BS01 rna ? GO:0002181 ... P05743 24927574
    152394 3j6y:66 (6.1) BS02 rna ? GO:0002181 ... P05743 24927574
    152395 3j6y:67 (6.1) BS01 rna ? GO:0002181 ... P0C2H6 24927574
    152396 3j6y:68 (6.1) BS01 rna ? GO:0002181 ... P02406 24927574
    152397 3j6y:69 (6.1) BS01 rna ? GO:0002181 ... P05747 24927574
    152398 3j6y:70 (6.1) BS01 rna ? GO:0002181 ... P14120 24927574
    152399 3j6y:71 (6.1) BS01 rna ? GO:0002181 ... P0C2H8 24927574
    152400 3j6y:72 (6.1) BS01 rna ? GO:0002181 ... P38061 24927574

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).