SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    152401 3j6y:73 (6.1) BS01 rna ? GO:0000027 ... P05744 24927574
    152402 3j6y:74 (6.1) BS01 rna ? GO:0002181 ... P87262 24927574
    152403 3j6y:75 (6.1) BS01 rna ? GO:0000463 ... P0CX84 24927574
    152404 3j6y:75 (6.1) BS02 rna ? GO:0000463 ... P0CX84 24927574
    152405 3j6y:76 (6.1) BS01 rna ? GO:0000470 ... P05745 24927574
    152406 3j6y:77 (6.1) BS01 rna ? GO:0000448 ... P49166 24927574
    152407 3j6y:77 (6.1) BS02 rna ? GO:0000448 ... P49166 24927574
    152408 3j6y:78 (6.1) BS01 rna ? GO:0002181 ... P49167 24927574
    152409 3j6y:79 (6.1) BS01 rna ? GO:0002181 ... P04650 24927574
    152410 3j6y:79 (6.1) BS02 rna ? GO:0002181 ... P04650 24927574
    152411 3j6y:80 (6.1) BS01 rna ? GO:0000027 ... P0CH08 24927574
    152412 3j6y:82 (6.1) BS01 rna ? GO:0002181 ... P0CX27 24927574
    152413 3j6y:83 (6.1) BS01 rna ? GO:0002181 ... P0CX25 24927574
    152414 3j6y:L1 (6.1) BS01 rna ? GO:0000055 ... P0CX43 24927574
    152415 3j6y:L2 (6.1) BS01 rna ? GO:0002181 ... P0CX45 24927574
    152416 3j6y:L2 (6.1) BS02 rna ? GO:0002181 ... P0CX45 24927574
    152417 3j6y:L3 (6.1) BS01 rna ? GO:0000027 ... P14126 24927574
    152418 3j6y:L4 (6.1) BS01 rna ? GO:0002181 ... P10664 24927574
    152419 3j6y:L4 (6.1) BS02 rna ? GO:0002181 ... P10664 24927574
    152420 3j6y:L5 (6.1) BS01 rna ? GO:0000027 ... P26321 24927574
    152421 3j6y:L5 (6.1) BS02 rna ? GO:0000027 ... P26321 24927574
    152422 3j6y:L6 (6.1) BS01 rna ? GO:0000027 ... Q02326 24927574
    152423 3j6y:L7 (6.1) BS01 rna ? GO:0000463 ... P05737 24927574
    152424 3j6y:L7 (6.1) BS02 rna ? GO:0000463 ... P05737 24927574
    152425 3j6y:L8 (6.1) BS01 rna ? GO:0000470 ... P17076 24927574
    152426 3j6y:L8 (6.1) BS02 rna ? GO:0000470 ... P17076 24927574
    152427 3j6y:L9 (6.1) BS01 rna ? GO:0002181 ... P05738 24927574
    152428 3j6y:RA (6.1) BS01 rna ? GO:0001965 ... P38011 24927574
    152429 3j6y:S0 (6.1) BS01 rna ? GO:0000028 ... P32905 24927574
    152430 3j6y:S1 (6.1) BS01 rna ? GO:0000462 ... P33442 24927574
    152431 3j6y:S2 (6.1) BS01 rna ? GO:0000054 ... P25443 24927574
    152432 3j6y:S3 (6.1) BS01 rna ? GO:0000054 ... P05750 24927574
    152433 3j6y:S4 (6.1) BS01 rna ? GO:0002181 ... P0CX35 24927574
    152434 3j6y:S5 (6.1) BS01 rna ? GO:0000054 ... P26783 24927574
    152435 3j6y:S6 (6.1) BS01 rna ? GO:0000462 ... P0CX37 24927574
    152436 3j6y:S7 (6.1) BS01 rna ? GO:0002181 ... P26786 24927574
    152437 3j6y:S8 (6.1) BS01 rna ? GO:0000462 ... P0CX39 24927574
    152438 3j6y:S8 (6.1) BS02 rna ? GO:0000462 ... P0CX39 24927574
    152439 3j6y:S9 (6.1) BS01 rna ? GO:0000462 ... O13516 24927574
    152440 3j77:10 (6.2) BS01 rna ? GO:0000054 ... Q08745 25043550
    152441 3j77:11 (6.2) BS01 rna ? GO:0000028 ... P0CX47 25043550
    152442 3j77:12 (6.2) BS01 rna ? GO:0000028 ... P48589 25043550
    152443 3j77:13 (6.2) BS01 rna ? GO:0000462 ... P05756 25043550
    152444 3j77:14 (6.2) BS01 rna ? GO:0000028 ... P06367 25043550
    152445 3j77:15 (6.2) BS01 rna ? GO:0000054 ... Q01855 25043550
    152446 3j77:16 (6.2) BS01 rna ? GO:0000462 ... P0CX51 25043550
    152447 3j77:17 (6.2) BS01 rna ? GO:0000028 ... P02407 25043550
    152448 3j77:18 (6.2) BS01 rna ? GO:0000054 ... P0CX55 25043550
    152449 3j77:19 (6.2) BS01 rna ? GO:0000054 ... P07280 25043550
    152450 3j77:20 (6.2) BS01 rna ? GO:0000462 ... P38701 25043550
    152451 3j77:21 (6.2) BS01 rna ? GO:0000447 ... P0C0V8 25043550
    152452 3j77:22 (6.2) BS01 rna ? GO:0002181 ... P0C0W1 25043550
    152453 3j77:23 (6.2) BS01 rna ? GO:0000462 ... P0CX29 25043550
    152454 3j77:24 (6.2) BS01 rna ? GO:0000462 ... P0CX31 25043550
    152455 3j77:25 (6.2) BS01 rna ? GO:0002181 ... Q3E792 25043550
    152456 3j77:26 (6.2) BS01 rna ? GO:0000054 ... P39938 25043550
    152457 3j77:27 (6.2) BS01 rna ? GO:0000028 ... P35997 25043550
    152458 3j77:28 (6.2) BS01 rna ? GO:0000028 ... Q3E7X9 25043550
    152459 3j77:29 (6.2) BS01 rna ? GO:0002181 ... P41057 25043550
    152460 3j77:30 (6.2) BS01 rna ? GO:0002181 ... P0CX33 25043550
    152461 3j77:31 (6.2) BS01 rna ? GO:0000028 ... P05759 25043550
    152462 3j77:60 (6.2) BS01 rna ? GO:0000027 ... P41805 25043550
    152463 3j77:60 (6.2) BS02 rna ? GO:0000027 ... P41805 25043550
    152464 3j77:61 (6.2) BS01 rna ? GO:0000027 ... P0C0W9 25043550
    152465 3j77:61 (6.2) BS02 rna ? GO:0000027 ... P0C0W9 25043550
    152466 3j77:62 (6.2) BS01 rna ? GO:0000027 ... P0CX53 25043550
    152467 3j77:63 (6.2) BS01 rna ? GO:0002181 ... Q12690 25043550
    152468 3j77:63 (6.2) BS02 rna ? GO:0002181 ... Q12690 25043550
    152469 3j77:64 (6.2) BS01 rna ? GO:0000027 ... P36105 25043550
    152470 3j77:65 (6.2) BS01 rna ? GO:0000470 ... P05748 25043550
    152471 3j77:65 (6.2) BS02 rna ? GO:0000470 ... P05748 25043550
    152472 3j77:66 (6.2) BS01 rna ? GO:0000470 ... P26784 25043550
    152473 3j77:67 (6.2) BS01 rna ? GO:0000448 ... P05740 25043550
    152474 3j77:67 (6.2) BS02 rna ? GO:0000448 ... P05740 25043550
    152475 3j77:68 (6.2) BS01 rna ? GO:0002181 ... P0CX49 25043550
    152476 3j77:69 (6.2) BS01 rna ? GO:0002181 ... P0CX82 25043550
    152477 3j77:69 (6.2) BS02 rna ? GO:0002181 ... P0CX82 25043550
    152478 3j77:70 (6.2) BS01 rna ? GO:0002181 ... P0CX23 25043550
    152479 3j77:70 (6.2) BS02 rna ? GO:0002181 ... P0CX23 25043550
    152480 3j77:71 (6.2) BS01 rna ? GO:0002181 ... Q02753 25043550
    152481 3j77:71 (6.2) BS02 rna ? GO:0002181 ... Q02753 25043550
    152482 3j77:72 (6.2) BS01 rna ? GO:0002181 ... P05749 25043550
    152483 3j77:73 (6.2) BS01 rna ? GO:0002181 ... P0CX41 25043550
    152484 3j77:73 (6.2) BS02 rna ? GO:0002181 ... P0CX41 25043550
    152485 3j77:74 (6.2) BS01 rna ? GO:0002181 ... P04449 25043550
    152486 3j77:74 (6.2) BS02 rna ? GO:0002181 ... P04449 25043550
    152487 3j77:75 (6.2) BS01 rna ? GO:0000027 ... P04456 25043550
    152488 3j77:75 (6.2) BS02 rna ? GO:0000027 ... P04456 25043550
    152489 3j77:76 (6.2) BS01 rna ? GO:0002181 ... P05743 25043550
    152490 3j77:76 (6.2) BS02 rna ? GO:0002181 ... P05743 25043550
    152491 3j77:77 (6.2) BS01 rna ? GO:0002181 ... P0C2H6 25043550
    152492 3j77:78 (6.2) BS01 rna ? GO:0002181 ... P02406 25043550
    152493 3j77:79 (6.2) BS01 rna ? GO:0002181 ... P05747 25043550
    152494 3j77:80 (6.2) BS01 rna ? GO:0002181 ... P14120 25043550
    152495 3j77:81 (6.2) BS01 rna ? GO:0002181 ... P0C2H8 25043550
    152496 3j77:82 (6.2) BS01 rna ? GO:0002181 ... P38061 25043550
    152497 3j77:83 (6.2) BS01 rna ? GO:0000027 ... P05744 25043550
    152498 3j77:84 (6.2) BS01 rna ? GO:0002181 ... P87262 25043550
    152499 3j77:85 (6.2) BS01 rna ? GO:0000463 ... P0CX84 25043550
    152500 3j77:85 (6.2) BS02 rna ? GO:0000463 ... P0CX84 25043550
    152501 3j77:86 (6.2) BS01 rna ? GO:0000470 ... P05745 25043550
    152502 3j77:87 (6.2) BS01 rna ? GO:0000448 ... P49166 25043550
    152503 3j77:87 (6.2) BS02 rna ? GO:0000448 ... P49166 25043550
    152504 3j77:88 (6.2) BS01 rna ? GO:0002181 ... P49167 25043550
    152505 3j77:89 (6.2) BS01 rna ? GO:0002181 ... P04650 25043550
    152506 3j77:89 (6.2) BS02 rna ? GO:0002181 ... P04650 25043550
    152507 3j77:90 (6.2) BS01 rna ? GO:0000027 ... P0CH08 25043550
    152508 3j77:92 (6.2) BS01 rna ? GO:0002181 ... P0CX27 25043550
    152509 3j77:92 (6.2) BS02 rna ? GO:0002181 ... P0CX27 25043550
    152510 3j77:93 (6.2) BS01 rna ? GO:0002181 ... P0CX25 25043550
    152511 3j77:93 (6.2) BS02 rna ? GO:0002181 ... P0CX25 25043550
    152512 3j77:L1 (6.2) BS01 rna ? GO:0000055 ... P0CX43 25043550
    152513 3j77:L2 (6.2) BS01 rna ? GO:0002181 ... P0CX45 25043550
    152514 3j77:L3 (6.2) BS01 rna ? GO:0000027 ... P14126 25043550
    152515 3j77:L4 (6.2) BS01 rna ? GO:0002181 ... P10664 25043550
    152516 3j77:L4 (6.2) BS02 rna ? GO:0002181 ... P10664 25043550
    152517 3j77:L5 (6.2) BS01 rna ? GO:0000027 ... P26321 25043550
    152518 3j77:L5 (6.2) BS02 rna ? GO:0000027 ... P26321 25043550
    152519 3j77:L6 (6.2) BS01 rna ? GO:0000027 ... Q02326 25043550
    152520 3j77:L7 (6.2) BS01 rna ? GO:0000463 ... P05737 25043550
    152521 3j77:L7 (6.2) BS02 rna ? GO:0000463 ... P05737 25043550
    152522 3j77:L8 (6.2) BS01 rna ? GO:0000470 ... P17076 25043550
    152523 3j77:L8 (6.2) BS02 rna ? GO:0000470 ... P17076 25043550
    152524 3j77:L9 (6.2) BS01 rna ? GO:0002181 ... P05738 25043550
    152525 3j77:P0 (6.2) BS01 rna ? GO:0000027 ... P05317 25043550
    152526 3j77:RC (6.2) BS01 rna ? GO:0001965 ... P38011 25043550
    152527 3j77:S0 (6.2) BS01 rna ? GO:0000028 ... P32905 25043550
    152528 3j77:S1 (6.2) BS01 rna ? GO:0000462 ... P33442 25043550
    152529 3j77:S1 (6.2) BS02 rna ? GO:0000462 ... P33442 25043550
    152530 3j77:S2 (6.2) BS01 rna ? GO:0000054 ... P25443 25043550
    152531 3j77:S3 (6.2) BS01 rna ? GO:0000054 ... P05750 25043550
    152532 3j77:S4 (6.2) BS01 rna ? GO:0002181 ... P0CX35 25043550
    152533 3j77:S5 (6.2) BS01 rna ? GO:0000054 ... P26783 25043550
    152534 3j77:S6 (6.2) BS01 rna ? GO:0000462 ... P0CX37 25043550
    152535 3j77:S7 (6.2) BS01 rna ? GO:0002181 ... P26786 25043550
    152536 3j77:S8 (6.2) BS01 rna ? GO:0000462 ... P0CX39 25043550
    152537 3j77:S9 (6.2) BS01 rna ? GO:0000462 ... O13516 25043550
    152538 3j78:10 (6.3) BS01 rna ? GO:0000054 ... Q08745 25043550
    152539 3j78:11 (6.3) BS01 rna ? GO:0000028 ... P0CX47 25043550
    152540 3j78:12 (6.3) BS01 rna ? GO:0000028 ... P48589 25043550
    152541 3j78:13 (6.3) BS01 rna ? GO:0000462 ... P05756 25043550
    152542 3j78:14 (6.3) BS01 rna ? GO:0000028 ... P06367 25043550
    152543 3j78:15 (6.3) BS01 rna ? GO:0000054 ... Q01855 25043550
    152544 3j78:16 (6.3) BS01 rna ? GO:0000462 ... P0CX51 25043550
    152545 3j78:17 (6.3) BS01 rna ? GO:0000028 ... P02407 25043550
    152546 3j78:18 (6.3) BS01 rna ? GO:0000054 ... P0CX55 25043550
    152547 3j78:19 (6.3) BS01 rna ? GO:0000054 ... P07280 25043550
    152548 3j78:20 (6.3) BS01 rna ? GO:0000462 ... P38701 25043550
    152549 3j78:21 (6.3) BS01 rna ? GO:0000447 ... P0C0V8 25043550
    152550 3j78:22 (6.3) BS01 rna ? GO:0002181 ... P0C0W1 25043550
    152551 3j78:23 (6.3) BS01 rna ? GO:0000462 ... P0CX29 25043550
    152552 3j78:24 (6.3) BS01 rna ? GO:0000462 ... P0CX31 25043550
    152553 3j78:25 (6.3) BS01 rna ? GO:0002181 ... Q3E792 25043550
    152554 3j78:26 (6.3) BS01 rna ? GO:0000054 ... P39938 25043550
    152555 3j78:27 (6.3) BS01 rna ? GO:0000028 ... P35997 25043550
    152556 3j78:28 (6.3) BS01 rna ? GO:0000028 ... Q3E7X9 25043550
    152557 3j78:29 (6.3) BS01 rna ? GO:0002181 ... P41057 25043550
    152558 3j78:30 (6.3) BS01 rna ? GO:0002181 ... P0CX33 25043550
    152559 3j78:31 (6.3) BS01 rna ? GO:0000028 ... P05759 25043550
    152560 3j78:60 (6.3) BS01 rna ? GO:0000027 ... P41805 25043550
    152561 3j78:60 (6.3) BS02 rna ? GO:0000027 ... P41805 25043550
    152562 3j78:61 (6.3) BS01 rna ? GO:0000027 ... P0C0W9 25043550
    152563 3j78:61 (6.3) BS02 rna ? GO:0000027 ... P0C0W9 25043550
    152564 3j78:62 (6.3) BS01 rna ? GO:0000027 ... P0CX53 25043550
    152565 3j78:63 (6.3) BS01 rna ? GO:0002181 ... Q12690 25043550
    152566 3j78:63 (6.3) BS02 rna ? GO:0002181 ... Q12690 25043550
    152567 3j78:64 (6.3) BS01 rna ? GO:0000027 ... P36105 25043550
    152568 3j78:65 (6.3) BS01 rna ? GO:0000470 ... P05748 25043550
    152569 3j78:65 (6.3) BS02 rna ? GO:0000470 ... P05748 25043550
    152570 3j78:66 (6.3) BS01 rna ? GO:0000470 ... P26784 25043550
    152571 3j78:67 (6.3) BS01 rna ? GO:0000448 ... P05740 25043550
    152572 3j78:67 (6.3) BS02 rna ? GO:0000448 ... P05740 25043550
    152573 3j78:68 (6.3) BS01 rna ? GO:0002181 ... P0CX49 25043550
    152574 3j78:69 (6.3) BS01 rna ? GO:0002181 ... P0CX82 25043550
    152575 3j78:69 (6.3) BS02 rna ? GO:0002181 ... P0CX82 25043550
    152576 3j78:70 (6.3) BS01 rna ? GO:0002181 ... P0CX23 25043550
    152577 3j78:70 (6.3) BS02 rna ? GO:0002181 ... P0CX23 25043550
    152578 3j78:71 (6.3) BS01 rna ? GO:0002181 ... Q02753 25043550
    152579 3j78:71 (6.3) BS02 rna ? GO:0002181 ... Q02753 25043550
    152580 3j78:72 (6.3) BS01 rna ? GO:0002181 ... P05749 25043550
    152581 3j78:73 (6.3) BS01 rna ? GO:0002181 ... P0CX41 25043550
    152582 3j78:74 (6.3) BS01 rna ? GO:0002181 ... P04449 25043550
    152583 3j78:75 (6.3) BS01 rna ? GO:0000027 ... P04456 25043550
    152584 3j78:75 (6.3) BS02 rna ? GO:0000027 ... P04456 25043550
    152585 3j78:76 (6.3) BS01 rna ? GO:0002181 ... P05743 25043550
    152586 3j78:76 (6.3) BS02 rna ? GO:0002181 ... P05743 25043550
    152587 3j78:77 (6.3) BS01 rna ? GO:0002181 ... P0C2H6 25043550
    152588 3j78:78 (6.3) BS01 rna ? GO:0002181 ... P02406 25043550
    152589 3j78:79 (6.3) BS01 rna ? GO:0002181 ... P05747 25043550
    152590 3j78:80 (6.3) BS01 rna ? GO:0002181 ... P14120 25043550
    152591 3j78:81 (6.3) BS01 rna ? GO:0002181 ... P0C2H8 25043550
    152592 3j78:82 (6.3) BS01 rna ? GO:0002181 ... P38061 25043550
    152593 3j78:83 (6.3) BS01 rna ? GO:0000027 ... P05744 25043550
    152594 3j78:84 (6.3) BS01 rna ? GO:0002181 ... P87262 25043550
    152595 3j78:85 (6.3) BS01 rna ? GO:0000463 ... P0CX84 25043550
    152596 3j78:85 (6.3) BS02 rna ? GO:0000463 ... P0CX84 25043550
    152597 3j78:86 (6.3) BS01 rna ? GO:0000470 ... P05745 25043550
    152598 3j78:87 (6.3) BS01 rna ? GO:0000448 ... P49166 25043550
    152599 3j78:87 (6.3) BS02 rna ? GO:0000448 ... P49166 25043550
    152600 3j78:88 (6.3) BS01 rna ? GO:0002181 ... P49167 25043550

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).