SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    153601 3j9x:T (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    153602 3j9x:T (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    153603 3j9x:U (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    153604 3j9x:U (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    153605 3j9x:V (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    153606 3j9x:V (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    153607 3j9x:W (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    153608 3j9x:W (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    153609 3j9x:X (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    153610 3j9x:X (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    153611 3j9x:Y (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    153612 3j9x:Y (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    153613 3j9x:Z (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    153614 3j9x:Z (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    153615 3j9x:a (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    153616 3j9x:a (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    153617 3j9x:b (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    153618 3j9x:b (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    153619 3j9x:c (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    153620 3j9x:c (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    153621 3j9x:d (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    153622 3j9x:d (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    153623 3j9x:e (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    153624 3j9x:e (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    153625 3j9x:f (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    153626 3j9x:f (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    153627 3j9x:g (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    153628 3j9x:g (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    153629 3j9x:h (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    153630 3j9x:h (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    153631 3j9x:i (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    153632 3j9x:i (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    153633 3j9x:j (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    153634 3j9x:j (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    153635 3j9x:k (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    153636 3j9x:k (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    153637 3j9x:l (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    153638 3j9x:l (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    153639 3j9x:m (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    153640 3j9x:m (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    153641 3j9x:n (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    153642 3j9x:n (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    153643 3j9x:o (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    153644 3j9x:o (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    153645 3j9x:p (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    153646 3j9x:p (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    153647 3j9x:q (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    153648 3j9x:q (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    153649 3j9x:r (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    153650 3j9x:r (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    153651 3j9x:s (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    153652 3j9x:s (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    153653 3j9x:t (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    153654 3j9x:t (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    153655 3j9x:u (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    153656 3j9x:u (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    153657 3j9x:v (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    153658 3j9x:v (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    153659 3j9x:w (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    153660 3j9x:w (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    153661 3j9x:x (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    153662 3j9x:x (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    153663 3j9x:y (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    153664 3j9x:y (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    153665 3j9x:z (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    153666 3j9x:z (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    153667 3j9y:0 (3.9) BS01 rna ? GO:0000027 ... P0A7N4 25870267
    153668 3j9y:1 (3.9) BS01 rna ? GO:0000027 ... P0A7N9 25870267
    153669 3j9y:2 (3.9) BS01 rna ? GO:0002181 ... P0A7P5 25870267
    153670 3j9y:3 (3.9) BS01 rna ? GO:0002181 ... P0A7Q1 25870267
    153671 3j9y:4 (3.9) BS01 rna ? GO:0002181 ... P0A7Q6 25870267
    153672 3j9y:5 (3.9) BS01 rna ? GO:0002181 ... P0A7J3 25870267
    153673 3j9y:6 (3.9) BS01 rna ? GO:0002181 ... P0A7M9 25870267
    153674 3j9y:C (3.9) BS01 rna ? GO:0000027 ... P60422 25870267
    153675 3j9y:D (3.9) BS01 rna ? GO:0000027 ... P60438 25870267
    153676 3j9y:E (3.9) BS01 rna ? GO:0001070 ... P60723 25870267
    153677 3j9y:F (3.9) BS01 rna ? GO:0000027 ... P62399 25870267
    153678 3j9y:F (3.9) BS02 rna ? GO:0000027 ... P62399 25870267
    153679 3j9y:F (3.9) BS03 rna ? GO:0000027 ... P62399 25870267
    153680 3j9y:G (3.9) BS01 rna ? GO:0000027 ... P0AG55 25870267
    153681 3j9y:H (3.9) BS01 rna ? GO:0002181 ... P0A7R1 25870267
    153682 3j9y:I (3.9) BS01 rna ? GO:0000027 ... P0A7J7 25870267
    153683 3j9y:J (3.9) BS01 rna ? GO:0002181 ... P0AA10 25870267
    153684 3j9y:K (3.9) BS01 rna ? GO:0002181 ... P0ADY3 25870267
    153685 3j9y:K (3.9) BS02 rna ? GO:0002181 ... P0ADY3 25870267
    153686 3j9y:L (3.9) BS01 rna ? GO:0002181 ... P02413 25870267
    153687 3j9y:M (3.9) BS01 rna ? GO:0000027 ... P0ADY7 25870267
    153688 3j9y:M (3.9) BS02 rna ? GO:0000027 ... P0ADY7 25870267
    153689 3j9y:N (3.9) BS01 rna ? GO:0000027 ... P0AG44 25870267
    153690 3j9y:O (3.9) BS01 rna ? GO:0002181 ... P0C018 25870267
    153691 3j9y:O (3.9) BS02 rna ? GO:0002181 ... P0C018 25870267
    153692 3j9y:P (3.9) BS01 rna ? GO:0000027 ... P0A7K6 25870267
    153693 3j9y:P (3.9) BS02 rna ? GO:0000027 ... P0A7K6 25870267
    153694 3j9y:Q (3.9) BS01 rna ? GO:0000027 ... P0A7L3 25870267
    153695 3j9y:R (3.9) BS01 rna ? GO:0002181 ... P0AG48 25870267
    153696 3j9y:S (3.9) BS01 rna ? GO:0002181 ... P61175 25870267
    153697 3j9y:T (3.9) BS01 rna ? GO:0000027 ... P0ADZ0 25870267
    153698 3j9y:U (3.9) BS01 rna ? GO:0000027 ... P60624 25870267
    153699 3j9y:V (3.9) BS01 rna ? GO:0000027 ... P68919 25870267
    153700 3j9y:W (3.9) BS01 rna ? GO:0000027 ... P0A7L8 25870267
    153701 3j9y:W (3.9) BS02 rna ? GO:0000027 ... P0A7L8 25870267
    153702 3j9y:X (3.9) BS01 rna ? GO:0000027 ... P0A7M2 25870267
    153703 3j9y:Y (3.9) BS01 rna ? GO:0000027 ... P0A7M6 25870267
    153704 3j9y:Z (3.9) BS01 rna ? GO:0000027 ... P0AG51 25870267
    153705 3j9y:Z (3.9) BS02 rna ? GO:0000027 ... P0AG51 25870267
    153706 3j9y:b (3.9) BS01 rna ? GO:0000028 ... P0A7V0 25870267
    153707 3j9y:c (3.9) BS01 rna ? GO:0000028 ... P0A7V3 25870267
    153708 3j9y:d (3.9) BS01 rna ? GO:0000028 ... P0A7V8 25870267
    153709 3j9y:e (3.9) BS01 rna ? GO:0000028 ... P0A7W1 25870267
    153710 3j9y:f (3.9) BS01 rna ? GO:0002181 ... P02358 25870267
    153711 3j9y:g (3.9) BS01 rna ? GO:0000028 ... P02359 25870267
    153712 3j9y:h (3.9) BS01 rna ? GO:0000028 ... P0A7W7 25870267
    153713 3j9y:i (3.9) BS01 rna ? GO:0002181 ... P0A7X3 25870267
    153714 3j9y:i (3.9) BS02 rna ? GO:0002181 ... P0A7X3 25870267
    153715 3j9y:j (3.9) BS01 rna ? GO:0000049 ... P0A7R5 25870267
    153716 3j9y:k (3.9) BS01 rna ? GO:0002181 ... P0A7R9 25870267
    153717 3j9y:l (3.9) BS01 rna ? GO:0000049 ... P0A7S3 25870267
    153718 3j9y:m (3.9) BS01 rna ? GO:0000049 ... P0A7S9 25870267
    153719 3j9y:n (3.9) BS01 rna ? GO:0003735 ... P0AG59 25870267
    153720 3j9y:o (3.9) BS01 rna ? GO:0000028 ... P0ADZ4 25870267
    153721 3j9y:o (3.9) BS02 rna ? GO:0000028 ... P0ADZ4 25870267
    153722 3j9y:p (3.9) BS01 rna ? GO:0000028 ... P0A7T3 25870267
    153723 3j9y:q (3.9) BS01 rna ? GO:0000028 ... P0AG63 25870267
    153724 3j9y:r (3.9) BS01 rna ? GO:0002181 ... P0A7T7 25870267
    153725 3j9y:s (3.9) BS01 rna ? GO:0002181 ... P0A7U3 25870267
    153726 3j9y:t (3.9) BS01 rna ? GO:0000028 ... P0A7U7 25870267
    153727 3j9y:u (3.9) BS01 rna ? GO:0000028 ... P68679 25870267
    153728 3j9y:w (3.9) BS01 rna ? GO:0003924 ... P21598 25870267
    153729 3j9y:w (3.9) BS02 rna ? GO:0003924 ... P21598 25870267
    153730 3j9z:L1 (3.6) BS01 rna ? GO:0000027 ... P0A7N4 26229983
    153731 3j9z:L2 (3.6) BS01 rna ? GO:0000027 ... P0A7N9 26229983
    153732 3j9z:L3 (3.6) BS01 rna ? GO:0002181 ... P0A7P5 26229983
    153733 3j9z:L4 (3.6) BS01 rna ? GO:0002181 ... P0A7Q1 26229983
    153734 3j9z:L5 (3.6) BS01 rna ? GO:0002181 ... P0A7Q6 26229983
    153735 3j9z:L6 (3.6) BS01 rna ? GO:0001070 ... P60723 26229983
    153736 3j9z:L7 (3.6) BS01 rna ? GO:0000027 ... P62399 26229983
    153737 3j9z:L7 (3.6) BS02 rna ? GO:0000027 ... P62399 26229983
    153738 3j9z:L7 (3.6) BS03 rna ? GO:0000027 ... P62399 26229983
    153739 3j9z:L8 (3.6) BS01 rna ? GO:0000027 ... P0AG55 26229983
    153740 3j9z:L9 (3.6) BS01 rna ? GO:0002181 ... P0A7R1 26229983
    153741 3j9z:LC (3.6) BS01 rna ? GO:0000027 ... P0A7L0 26229983
    153742 3j9z:LC (3.6) BS02 rna ? GO:0000027 ... P0A7L0 26229983
    153743 3j9z:LD (3.6) BS01 rna ? GO:0002181 ... P0A7J3 26229983
    153744 3j9z:LE (3.6) BS01 rna ? GO:0000027 ... P0A7J7 26229983
    153745 3j9z:LF (3.6) BS01 rna ? GO:0002181 ... P0AA10 26229983
    153746 3j9z:LG (3.6) BS01 rna ? GO:0002181 ... P0ADY3 26229983
    153747 3j9z:LG (3.6) BS02 rna ? GO:0002181 ... P0ADY3 26229983
    153748 3j9z:LH (3.6) BS01 rna ? GO:0002181 ... P02413 26229983
    153749 3j9z:LI (3.6) BS01 rna ? GO:0000027 ... P0ADY7 26229983
    153750 3j9z:LI (3.6) BS02 rna ? GO:0000027 ... P0ADY7 26229983
    153751 3j9z:LJ (3.6) BS01 rna ? GO:0000027 ... P0AG44 26229983
    153752 3j9z:LK (3.6) BS01 rna ? GO:0002181 ... P0C018 26229983
    153753 3j9z:LK (3.6) BS02 rna ? GO:0002181 ... P0C018 26229983
    153754 3j9z:LM (3.6) BS01 rna ? GO:0000027 ... P0A7K6 26229983
    153755 3j9z:LM (3.6) BS02 rna ? GO:0000027 ... P0A7K6 26229983
    153756 3j9z:LN (3.6) BS01 rna ? GO:0000027 ... P60422 26229983
    153757 3j9z:LN (3.6) BS02 rna ? GO:0000027 ... P60422 26229983
    153758 3j9z:LO (3.6) BS01 rna ? GO:0000027 ... P0A7L3 26229983
    153759 3j9z:LP (3.6) BS01 rna ? GO:0002181 ... P0AG48 26229983
    153760 3j9z:LQ (3.6) BS01 rna ? GO:0002181 ... P61175 26229983
    153761 3j9z:LR (3.6) BS01 rna ? GO:0000027 ... P0ADZ0 26229983
    153762 3j9z:LS (3.6) BS01 rna ? GO:0000027 ... P60624 26229983
    153763 3j9z:LT (3.6) BS01 rna ? GO:0000027 ... P68919 26229983
    153764 3j9z:LT (3.6) BS02 rna ? GO:0000027 ... P68919 26229983
    153765 3j9z:LU (3.6) BS01 rna ? GO:0000027 ... P0A7L8 26229983
    153766 3j9z:LU (3.6) BS02 rna ? GO:0000027 ... P0A7L8 26229983
    153767 3j9z:LV (3.6) BS01 rna ? GO:0000027 ... P0A7M2 26229983
    153768 3j9z:LW (3.6) BS01 rna ? GO:0000027 ... P0A7M6 26229983
    153769 3j9z:LX (3.6) BS01 rna ? GO:0000027 ... P60438 26229983
    153770 3j9z:LY (3.6) BS01 rna ? GO:0000027 ... P0AG51 26229983
    153771 3j9z:LY (3.6) BS02 rna ? GO:0000027 ... P0AG51 26229983
    153772 3j9z:LZ (3.6) BS01 rna ? GO:0002181 ... P0A7M9 26229983
    153773 3j9z:LZ (3.6) BS02 rna ? GO:0002181 ... P0A7M9 26229983
    153774 3j9z:S1 (3.6) BS01 rna 3.6.5.- GO:0003746 ... P0A6M8 26229983
    153775 3j9z:S1 (3.6) BS02 rna 3.6.5.- GO:0003746 ... P0A6M8 26229983
    153776 3j9z:S1 (3.6) BS03 rna 3.6.5.- GO:0003746 ... P0A6M8 26229983
    153777 3j9z:S1 (3.6) BS04 GTP 3.6.5.- GO:0003746 ... P0A6M8 26229983
    153778 3j9z:SB (3.6) BS01 rna ? GO:0000028 ... P0A7V0 26229983
    153779 3j9z:SC (3.6) BS01 rna ? GO:0000028 ... P0A7V3 26229983
    153780 3j9z:SD (3.6) BS01 rna ? GO:0000028 ... P0A7V8 26229983
    153781 3j9z:SE (3.6) BS01 rna ? GO:0000028 ... P0A7W1 26229983
    153782 3j9z:SF (3.6) BS01 rna ? GO:0002181 ... P02358 26229983
    153783 3j9z:SG (3.6) BS01 rna ? GO:0000028 ... P02359 26229983
    153784 3j9z:SG (3.6) BS02 rna ? GO:0000028 ... P02359 26229983
    153785 3j9z:SH (3.6) BS01 rna ? GO:0000028 ... P0A7W7 26229983
    153786 3j9z:SI (3.6) BS01 rna ? GO:0002181 ... P0A7X3 26229983
    153787 3j9z:SJ (3.6) BS01 rna ? GO:0000049 ... P0A7R5 26229983
    153788 3j9z:SK (3.6) BS01 rna ? GO:0002181 ... P0A7R9 26229983
    153789 3j9z:SK (3.6) BS02 rna ? GO:0002181 ... P0A7R9 26229983
    153790 3j9z:SL (3.6) BS01 rna ? GO:0000049 ... P0A7S3 26229983
    153791 3j9z:SM (3.6) BS01 rna ? GO:0000049 ... P0A7S9 26229983
    153792 3j9z:SN (3.6) BS01 rna ? GO:0000028 ... P0AG59 26229983
    153793 3j9z:SO (3.6) BS01 rna ? GO:0003735 ... Q8X9M2 26229983
    153794 3j9z:SO (3.6) BS02 rna ? GO:0003735 ... Q8X9M2 26229983
    153795 3j9z:SP (3.6) BS01 rna ? GO:0000028 ... P0A7T3 26229983
    153796 3j9z:SQ (3.6) BS01 rna ? GO:0000028 ... P0AG63 26229983
    153797 3j9z:SR (3.6) BS01 rna ? GO:0002181 ... P0A7T7 26229983
    153798 3j9z:SS (3.6) BS01 rna ? GO:0002181 ... P0A7U3 26229983
    153799 3j9z:SS (3.6) BS02 rna ? GO:0002181 ... P0A7U3 26229983
    153800 3j9z:ST (3.6) BS01 rna ? GO:0000028 ... P0A7U7 26229983

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).