SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    153801 3j9z:SU (3.6) BS01 rna ? GO:0000028 ... P68679 26229983
    153802 3ja1:L0 (3.6) BS01 rna ? GO:0000027 ... P0A7M6 26229983
    153803 3ja1:L1 (3.6) BS01 rna ? GO:0000027 ... P0AG51 26229983
    153804 3ja1:L2 (3.6) BS01 rna ? GO:0002181 ... P0A7M9 26229983
    153805 3ja1:L2 (3.6) BS02 rna ? GO:0002181 ... P0A7M9 26229983
    153806 3ja1:L3 (3.6) BS01 rna ? GO:0000027 ... P0A7N4 26229983
    153807 3ja1:L4 (3.6) BS01 rna ? GO:0000027 ... P0A7N9 26229983
    153808 3ja1:L5 (3.6) BS01 rna ? GO:0002181 ... P0A7P5 26229983
    153809 3ja1:L6 (3.6) BS01 rna ? GO:0002181 ... P0A7Q1 26229983
    153810 3ja1:L7 (3.6) BS01 rna ? GO:0002181 ... P0A7Q6 26229983
    153811 3ja1:LC (3.6) BS01 rna ? GO:0000027 ... P0A7L0 26229983
    153812 3ja1:LC (3.6) BS02 rna ? GO:0000027 ... P0A7L0 26229983
    153813 3ja1:LD (3.6) BS01 rna ? GO:0000027 ... P60422 26229983
    153814 3ja1:LD (3.6) BS02 rna ? GO:0000027 ... P60422 26229983
    153815 3ja1:LE (3.6) BS01 rna ? GO:0000027 ... P60438 26229983
    153816 3ja1:LF (3.6) BS01 rna ? GO:0001070 ... P60723 26229983
    153817 3ja1:LG (3.6) BS01 rna ? GO:0000027 ... P62399 26229983
    153818 3ja1:LG (3.6) BS02 rna ? GO:0000027 ... P62399 26229983
    153819 3ja1:LH (3.6) BS01 rna ? GO:0000027 ... P0AG55 26229983
    153820 3ja1:LI (3.6) BS01 rna ? GO:0002181 ... P0A7R1 26229983
    153821 3ja1:LJ (3.6) BS01 rna ? GO:0002181 ... P0A7J3 26229983
    153822 3ja1:LK (3.6) BS01 rna ? GO:0000027 ... P0A7J7 26229983
    153823 3ja1:LL (3.6) BS01 rna ? GO:0002181 ... P0AA10 26229983
    153824 3ja1:LM (3.6) BS01 rna ? GO:0002181 ... P0ADY3 26229983
    153825 3ja1:LM (3.6) BS02 rna ? GO:0002181 ... P0ADY3 26229983
    153826 3ja1:LN (3.6) BS01 rna ? GO:0002181 ... P02413 26229983
    153827 3ja1:LO (3.6) BS01 rna ? GO:0000027 ... P0ADY7 26229983
    153828 3ja1:LO (3.6) BS02 rna ? GO:0000027 ... P0ADY7 26229983
    153829 3ja1:LP (3.6) BS01 rna ? GO:0000027 ... P0AG44 26229983
    153830 3ja1:LQ (3.6) BS01 rna ? GO:0002181 ... P0C018 26229983
    153831 3ja1:LQ (3.6) BS02 rna ? GO:0002181 ... P0C018 26229983
    153832 3ja1:LR (3.6) BS01 rna ? GO:0000027 ... P0A7K6 26229983
    153833 3ja1:LR (3.6) BS02 rna ? GO:0000027 ... P0A7K6 26229983
    153834 3ja1:LS (3.6) BS01 rna ? GO:0000027 ... P0A7L3 26229983
    153835 3ja1:LT (3.6) BS01 rna ? GO:0002181 ... P0AG48 26229983
    153836 3ja1:LU (3.6) BS01 rna ? GO:0002181 ... P61175 26229983
    153837 3ja1:LV (3.6) BS01 rna ? GO:0000027 ... P0ADZ0 26229983
    153838 3ja1:LW (3.6) BS01 rna ? GO:0000027 ... P60624 26229983
    153839 3ja1:LX (3.6) BS01 rna ? GO:0000027 ... P68919 26229983
    153840 3ja1:LY (3.6) BS01 rna ? GO:0000027 ... P0A7L8 26229983
    153841 3ja1:LY (3.6) BS02 rna ? GO:0000027 ... P0A7L8 26229983
    153842 3ja1:LZ (3.6) BS01 rna ? GO:0000027 ... P0A7M2 26229983
    153843 3ja1:S3 (3.6) BS01 rna 3.6.5.- GO:0003746 ... P0A6M8 26229983
    153844 3ja1:S3 (3.6) BS02 rna 3.6.5.- GO:0003746 ... P0A6M8 26229983
    153845 3ja1:S3 (3.6) BS03 GTP 3.6.5.- GO:0003746 ... P0A6M8 26229983
    153846 3ja1:SB (3.6) BS01 rna ? GO:0000028 ... P0A7V0 26229983
    153847 3ja1:SC (3.6) BS01 rna ? GO:0000028 ... P0A7V3 26229983
    153848 3ja1:SC (3.6) BS02 rna ? GO:0000028 ... P0A7V3 26229983
    153849 3ja1:SD (3.6) BS01 rna ? GO:0000028 ... P0A7V8 26229983
    153850 3ja1:SD (3.6) BS02 rna ? GO:0000028 ... P0A7V8 26229983
    153851 3ja1:SE (3.6) BS01 rna ? GO:0000028 ... P0A7W1 26229983
    153852 3ja1:SE (3.6) BS02 rna ? GO:0000028 ... P0A7W1 26229983
    153853 3ja1:SF (3.6) BS01 rna ? GO:0002181 ... P02358 26229983
    153854 3ja1:SF (3.6) BS02 rna ? GO:0002181 ... P02358 26229983
    153855 3ja1:SG (3.6) BS01 rna ? GO:0000028 ... P02359 26229983
    153856 3ja1:SG (3.6) BS02 rna ? GO:0000028 ... P02359 26229983
    153857 3ja1:SH (3.6) BS01 rna ? GO:0000028 ... P0A7W7 26229983
    153858 3ja1:SI (3.6) BS01 rna ? GO:0002181 ... P0A7X3 26229983
    153859 3ja1:SJ (3.6) BS01 rna ? GO:0000049 ... P0A7R5 26229983
    153860 3ja1:SK (3.6) BS01 rna ? GO:0002181 ... P0A7R9 26229983
    153861 3ja1:SK (3.6) BS02 rna ? GO:0002181 ... P0A7R9 26229983
    153862 3ja1:SK (3.6) BS03 rna ? GO:0002181 ... P0A7R9 26229983
    153863 3ja1:SL (3.6) BS01 rna ? GO:0000049 ... P0A7S3 26229983
    153864 3ja1:SM (3.6) BS01 rna ? GO:0000049 ... P0A7S9 26229983
    153865 3ja1:SN (3.6) BS01 rna ? GO:0000028 ... P0AG59 26229983
    153866 3ja1:SO (3.6) BS01 rna ? GO:0003735 ... Q8X9M2 26229983
    153867 3ja1:SO (3.6) BS02 rna ? GO:0003735 ... Q8X9M2 26229983
    153868 3ja1:SP (3.6) BS01 rna ? GO:0000028 ... P0A7T3 26229983
    153869 3ja1:SQ (3.6) BS01 rna ? GO:0000028 ... P0AG63 26229983
    153870 3ja1:SR (3.6) BS01 rna ? GO:0002181 ... P0A7T7 26229983
    153871 3ja1:SR (3.6) BS02 rna ? GO:0002181 ... P0A7T7 26229983
    153872 3ja1:SS (3.6) BS01 rna ? GO:0002181 ... P0A7U3 26229983
    153873 3ja1:SS (3.6) BS02 rna ? GO:0002181 ... P0A7U3 26229983
    153874 3ja1:ST (3.6) BS01 rna ? GO:0000028 ... P0A7U7 26229983
    153875 3ja1:SU (3.6) BS01 rna ? GO:0000028 ... P68679 26229983
    153876 3ja1:SU (3.6) BS02 rna ? GO:0000028 ... P68679 26229983
    153877 3ja8:2 (3.8) BS01 ADP 3.6.4.12 GO:0000727 ... P29469 26222030
    153878 3ja8:2 (3.8) BS02 ADP 3.6.4.12 GO:0000727 ... P29469 26222030
    153879 3ja8:3 (3.8) BS01 ADP 3.6.4.12 GO:0000727 ... P24279 26222030
    153880 3ja8:3 (3.8) BS02 ADP 3.6.4.12 GO:0000727 ... P24279 26222030
    153881 3ja8:4 (3.8) BS01 ADP 3.6.4.12 GO:0000727 ... P30665 26222030
    153882 3ja8:4 (3.8) BS02 ADP 3.6.4.12 GO:0000727 ... P30665 26222030
    153883 3ja8:5 (3.8) BS01 ADP 3.6.4.12 GO:0000727 ... P29496 26222030
    153884 3ja8:5 (3.8) BS02 ADP 3.6.4.12 GO:0000727 ... P29496 26222030
    153885 3ja8:6 (3.8) BS01 ADP 3.6.4.12 GO:0000727 ... P53091 26222030
    153886 3ja8:7 (3.8) BS01 ADP 3.6.4.12 GO:0000727 ... P38132 26222030
    153887 3jaa:A (22.0) BS01 dna 2.7.7.7 GO:0003684 ... Q9Y253 26503230
    153888 3jaa:A (22.0) BS02 dna 2.7.7.7 GO:0003684 ... Q9Y253 26503230
    153889 3jaa:A (22.0) BS03 DZ4 2.7.7.7 GO:0003684 ... Q9Y253 26503230
    153890 3jaa:A (22.0) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 26503230
    153891 3jaa:A (22.0) BS05 MG 2.7.7.7 GO:0003684 ... Q9Y253 26503230
    153892 3jaa:A (22.0) BS06 DZ4 2.7.7.7 GO:0003684 ... Q9Y253 26503230
    153893 3jab:C (11.0) BS01 peptide 3.1.4.35 GO:0004114 ... P16586
    Q28156
    25809480
    153894 3jab:O (11.0) BS01 peptide 3.1.4.35 GO:0004114 ... P16586
    Q28156
    25809480
    153895 3jad:A (3.9) BS01 SY9 ? GO:0004888 ... O93430 26344198
    153896 3jad:A (3.9) BS02 SY9 ? GO:0004888 ... O93430 26344198
    153897 3jad:B (3.9) BS01 SY9 ? GO:0004888 ... O93430 26344198
    153898 3jad:B (3.9) BS02 SY9 ? GO:0004888 ... O93430 26344198
    153899 3jad:C (3.9) BS01 SY9 ? GO:0004888 ... O93430 26344198
    153900 3jad:C (3.9) BS02 SY9 ? GO:0004888 ... O93430 26344198
    153901 3jad:D (3.9) BS01 SY9 ? GO:0004888 ... O93430 26344198
    153902 3jad:D (3.9) BS02 SY9 ? GO:0004888 ... O93430 26344198
    153903 3jad:E (3.9) BS01 SY9 ? GO:0004888 ... O93430 26344198
    153904 3jad:E (3.9) BS02 SY9 ? GO:0004888 ... O93430 26344198
    153905 3jaf:A (3.8) BS01 IVM ? GO:0004888 ... O93430 26344198
    153906 3jaf:A (3.8) BS02 IVM ? GO:0004888 ... O93430 26344198
    153907 3jaf:B (3.8) BS01 IVM ? GO:0004888 ... O93430 26344198
    153908 3jaf:B (3.8) BS02 IVM ? GO:0004888 ... O93430 26344198
    153909 3jaf:C (3.8) BS01 IVM ? GO:0004888 ... O93430 26344198
    153910 3jaf:C (3.8) BS02 IVM ? GO:0004888 ... O93430 26344198
    153911 3jaf:D (3.8) BS01 IVM ? GO:0004888 ... O93430 26344198
    153912 3jaf:D (3.8) BS02 IVM ? GO:0004888 ... O93430 26344198
    153913 3jaf:E (3.8) BS01 IVM ? GO:0004888 ... O93430 26344198
    153914 3jaf:E (3.8) BS02 IVM ? GO:0004888 ... O93430 26344198
    153915 3jag:A (3.65) BS01 rna ? GO:0002181 ... G1TT27 26245381
    153916 3jag:AA (3.65) BS01 rna N/A GO:0003735 ... N/A 26245381
    153917 3jag:B (3.65) BS01 rna ? GO:0003723 ... G1TL06 26245381
    153918 3jag:BB (3.65) BS01 rna ? GO:0003735 ... G1SS70 26245381
    153919 3jag:C (3.65) BS01 rna ? GO:0003735 ... G1SVW5 26245381
    153920 3jag:C (3.65) BS02 rna ? GO:0003735 ... G1SVW5 26245381
    153921 3jag:CC (3.65) BS01 rna N/A GO:0003723 ... N/A 26245381
    153922 3jag:D (3.65) BS01 rna ? GO:0000027 ... P19949 26245381
    153923 3jag:D (3.65) BS02 rna ? GO:0000027 ... P19949 26245381
    153924 3jag:DD (3.65) BS01 rna 4.2.99.18 GO:0003723 ... G1TNM3 26245381
    153925 3jag:E (3.65) BS01 rna ? GO:0003735 ... G1TG04 26245381
    153926 3jag:EE (3.65) BS01 rna ? GO:0003723 ... G1TK17 26245381
    153927 3jag:F (3.65) BS01 rna N/A GO:0003723 ... N/A 26245381
    153928 3jag:F (3.65) BS02 rna N/A GO:0003723 ... N/A 26245381
    153929 3jag:FF (3.65) BS01 rna ? GO:0003723 ... G1TFM5 26245381
    153930 3jag:FF (3.65) BS02 rna ? GO:0003723 ... G1TFM5 26245381
    153931 3jag:G (3.65) BS01 rna ? GO:0003723 ... G1STW0 26245381
    153932 3jag:G (3.65) BS02 rna ? GO:0003723 ... G1STW0 26245381
    153933 3jag:GG (3.65) BS01 rna ? GO:0003735 ... G1TM55 26245381
    153934 3jag:H (3.65) BS01 rna ? GO:0002181 ... G1SWI6 26245381
    153935 3jag:HH (3.65) BS01 rna ? GO:0003735 ... G1SVB0 26245381
    153936 3jag:I (3.65) BS01 rna ? GO:0003735 ... B7NZQ2 26245381
    153937 3jag:I (3.65) BS02 rna ? GO:0003735 ... B7NZQ2 26245381
    153938 3jag:II (3.65) BS01 rna ? GO:0003735 ... G1TJW1 26245381
    153939 3jag:II (3.65) BS02 rna ? GO:0003735 ... G1TJW1 26245381
    153940 3jag:J (3.65) BS01 rna ? GO:0003735 ... G1TUB8 26245381
    153941 3jag:J (3.65) BS02 rna ? GO:0003735 ... G1TUB8 26245381
    153942 3jag:J (3.65) BS03 rna ? GO:0003735 ... G1TUB8 26245381
    153943 3jag:JJ (3.65) BS01 rna ? GO:0003723 ... B7NZS8 26245381
    153944 3jag:KK (3.65) BS01 rna ? N/A G1TPV3 26245381
    153945 3jag:L (3.65) BS01 rna N/A GO:0003735 ... N/A 26245381
    153946 3jag:L (3.65) BS02 rna N/A GO:0003735 ... N/A 26245381
    153947 3jag:LL (3.65) BS01 rna ? GO:0003735 ... G1TRM4 26245381
    153948 3jag:LL (3.65) BS02 MG ? GO:0003735 ... G1TRM4 26245381
    153949 3jag:M (3.65) BS01 rna ? GO:0003723 ... G1SZ12 26245381
    153950 3jag:MM (3.65) BS01 rna ? GO:0003735 ... G1SFR8 26245381
    153951 3jag:N (3.65) BS01 rna ? GO:0002181 ... G1T0C1 26245381
    153952 3jag:N (3.65) BS02 rna ? GO:0002181 ... G1T0C1 26245381
    153953 3jag:NN (3.65) BS01 rna ? GO:0003735 ... G1SP51 26245381
    153954 3jag:O (3.65) BS01 rna N/A GO:0003735 ... N/A 26245381
    153955 3jag:OO (3.65) BS01 rna ? GO:0003735 ... G1T1F0 26245381
    153956 3jag:P (3.65) BS01 peptide N/A GO:0003735 ... N/A 26245381
    153957 3jag:P (3.65) BS02 rna N/A GO:0003735 ... N/A 26245381
    153958 3jag:P (3.65) BS03 rna N/A GO:0003735 ... N/A 26245381
    153959 3jag:PP (3.65) BS01 rna ? GO:0003723 ... G1U0Q2 26245381
    153960 3jag:Q (3.65) BS01 rna N/A GO:0003735 ... N/A 26245381
    153961 3jag:QQ (3.65) BS01 rna ? GO:0000462 ... G1SGX4 26245381
    153962 3jag:R (3.65) BS01 rna N/A GO:0003723 ... N/A 26245381
    153963 3jag:R (3.65) BS02 rna N/A GO:0003723 ... N/A 26245381
    153964 3jag:RR (3.65) BS01 rna ? GO:0003735 ... G1TU13 26245381
    153965 3jag:S (3.65) BS01 rna N/A GO:0003735 ... N/A 26245381
    153966 3jag:S (3.65) BS02 rna N/A GO:0003735 ... N/A 26245381
    153967 3jag:SS (3.65) BS01 rna ? GO:0003676 ... G1TPG3 26245381
    153968 3jag:T (3.65) BS01 rna ? GO:0003735 ... G1SHQ2 26245381
    153969 3jag:T (3.65) BS02 rna ? GO:0003735 ... G1SHQ2 26245381
    153970 3jag:TT (3.65) BS01 rna ? GO:0000028 ... G1TN62 26245381
    153971 3jag:U (3.65) BS01 rna N/A GO:0003735 ... N/A 26245381
    153972 3jag:UU (3.65) BS01 rna ? GO:0003723 ... G1SIZ2 26245381
    153973 3jag:V (3.65) BS01 rna ? GO:0000122 ... G1T6D1 26245381
    153974 3jag:W (3.65) BS01 rna N/A GO:0003735 ... N/A 26245381
    153975 3jag:WW (3.65) BS01 rna ? GO:0003735 ... G1TG89 26245381
    153976 3jag:X (3.65) BS01 rna ? GO:0003735 ... G1SE76 26245381
    153977 3jag:X (3.65) BS02 rna ? GO:0003735 ... G1SE76 26245381
    153978 3jag:XX (3.65) BS01 rna ? GO:0003735 ... G1SZ47 26245381
    153979 3jag:Y (3.65) BS01 rna ? GO:0003723 ... G1SQH0 26245381
    153980 3jag:Y (3.65) BS02 rna ? GO:0003723 ... G1SQH0 26245381
    153981 3jag:YY (3.65) BS01 rna ? GO:0003735 ... G1T3D8 26245381
    153982 3jag:Z (3.65) BS01 rna ? GO:0002181 ... G1TXF6 26245381
    153983 3jag:ZZ (3.65) BS01 rna ? N/A G1TDB3 26245381
    153984 3jag:a (3.65) BS01 rna ? GO:0003735 ... G1SNY0 26245381
    153985 3jag:aa (3.65) BS01 rna N/A GO:0003735 ... N/A 26245381
    153986 3jag:aa (3.65) BS02 ZN N/A GO:0003735 ... N/A 26245381
    153987 3jag:b (3.65) BS01 rna ? GO:0003735 ... G1SGR6 26245381
    153988 3jag:bb (3.65) BS01 rna ? GO:0003735 ... G1TZ76 26245381
    153989 3jag:c (3.65) BS01 rna N/A GO:0003723 ... N/A 26245381
    153990 3jag:cc (3.65) BS01 rna ? GO:0003735 ... G1TIB4 26245381
    153991 3jag:d (3.65) BS01 rna ? GO:0003735 ... G1SHG0 26245381
    153992 3jag:dd (3.65) BS01 rna ? GO:0002181 ... G1U7M4 26245381
    153993 3jag:dd (3.65) BS02 ZN ? GO:0002181 ... G1U7M4 26245381
    153994 3jag:e (3.65) BS01 rna ? GO:0003735 ... G1TUN8 26245381
    153995 3jag:ee (3.65) BS01 rna ? GO:0003735 ... G1T8A2 26245381
    153996 3jag:f (3.65) BS01 rna ? GO:0003735 ... G1SF08 26245381
    153997 3jag:ff (3.65) BS01 rna ? GO:0003735 ... G1SK22 26245381
    153998 3jag:ff (3.65) BS02 ZN ? GO:0003735 ... G1SK22 26245381
    153999 3jag:g (3.65) BS01 rna ? GO:0003735 ... G1TXG5 26245381
    154000 3jag:g (3.65) BS02 ZN ? GO:0003735 ... G1TXG5 26245381

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).