SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    154801 3jbn:L (4.7) BS01 rna ? GO:0002181 ... Q8IM10 26432834
    154802 3jbn:L (4.7) BS02 rna ? GO:0002181 ... Q8IM10 26432834
    154803 3jbn:M (4.7) BS01 rna ? GO:0000462 ... Q8IAX5 26432834
    154804 3jbn:N (4.7) BS01 rna ? GO:0003735 ... Q8IK02 26432834
    154805 3jbn:O (4.7) BS01 rna ? N/A Q8IBQ5 26432834
    154806 3jbn:P (4.7) BS01 rna N/A GO:0003735 ... N/A 26432834
    154807 3jbn:Q (4.7) BS01 rna ? GO:0003735 ... O97248 26432834
    154808 3jbn:S (4.7) BS01 rna ? GO:0003676 ... Q8IIA2 26432834
    154809 3jbn:T (4.7) BS01 rna ? GO:0003735 ... C0H4K8 26432834
    154810 3jbn:U (4.7) BS01 rna ? GO:0000462 ... Q8IDB0 26432834
    154811 3jbn:U (4.7) BS02 rna ? GO:0000462 ... Q8IDB0 26432834
    154812 3jbn:V (4.7) BS01 rna ? GO:0003735 ... O77381 26432834
    154813 3jbn:W (4.7) BS01 rna ? GO:0003735 ... Q8I502 26432834
    154814 3jbn:X (4.7) BS01 rna ? GO:0003723 ... C0H5C2 26432834
    154815 3jbn:Y (4.7) BS01 rna ? GO:0003735 ... Q8IFP2 26432834
    154816 3jbn:Z (4.7) BS01 rna ? GO:0003735 ... Q8IHS5 26432834
    154817 3jbo:1 (5.8) BS01 rna ? GO:0002181 ... Q8I3R6 26432834
    154818 3jbo:2 (5.8) BS01 rna ? N/A Q8ILN8 26432834
    154819 3jbo:3 (5.8) BS01 rna ? GO:0003735 ... O96258 26432834
    154820 3jbo:4 (5.8) BS01 rna ? GO:0003735 ... Q8IEN2 26432834
    154821 3jbo:5 (5.8) BS01 rna ? GO:0000028 ... Q8IKL9 26432834
    154822 3jbo:6 (5.8) BS01 rna ? GO:0003735 ... O96269 26432834
    154823 3jbo:A0 (5.8) BS01 rna ? GO:0003735 ... Q8IEM3 26432834
    154824 3jbo:A1 (5.8) BS01 rna ? GO:0003735 ... Q8IKM5 26432834
    154825 3jbo:A2 (5.8) BS01 rna ? GO:0022625 ... Q8IHU0 26432834
    154826 3jbo:A3 (5.8) BS01 rna ? GO:0000463 ... Q8IIB4 26432834
    154827 3jbo:A3 (5.8) BS02 rna ? GO:0000463 ... Q8IIB4 26432834
    154828 3jbo:A4 (5.8) BS01 rna ? GO:0002181 ... C6S3J6 26432834
    154829 3jbo:A5 (5.8) BS01 rna ? GO:0003723 ... O97250 26432834
    154830 3jbo:A5 (5.8) BS02 rna ? GO:0003723 ... O97250 26432834
    154831 3jbo:A6 (5.8) BS01 rna ? GO:0003723 ... Q8IJK8 26432834
    154832 3jbo:A7 (5.8) BS01 rna ? GO:0003735 ... Q8I463 26432834
    154833 3jbo:A8 (5.8) BS01 rna ? GO:0003735 ... Q8I3B0 26432834
    154834 3jbo:A9 (5.8) BS01 rna ? GO:0003735 ... Q8IHT9 26432834
    154835 3jbo:AD (5.8) BS01 rna ? GO:0002181 ... Q8I3T9 26432834
    154836 3jbo:AD (5.8) BS02 rna ? GO:0002181 ... Q8I3T9 26432834
    154837 3jbo:AE (5.8) BS01 rna ? GO:0003723 ... Q8IJC6 26432834
    154838 3jbo:AF (5.8) BS01 rna ? GO:0003723 ... Q8I431 26432834
    154839 3jbo:AF (5.8) BS02 rna ? GO:0003723 ... Q8I431 26432834
    154840 3jbo:AG (5.8) BS01 rna ? GO:0003723 ... Q8IBQ6 26432834
    154841 3jbo:AG (5.8) BS02 rna ? GO:0003723 ... Q8IBQ6 26432834
    154842 3jbo:AH (5.8) BS01 rna ? GO:0002181 ... Q8IE85 26432834
    154843 3jbo:AI (5.8) BS01 rna N/A GO:0003735 ... N/A 26432834
    154844 3jbo:AJ (5.8) BS01 rna ? GO:0003723 ... Q8ILL2 26432834
    154845 3jbo:AK (5.8) BS01 rna ? GO:0003729 ... Q8IJZ7 26432834
    154846 3jbo:AL (5.8) BS01 rna ? GO:0003723 ... Q8IAX6 26432834
    154847 3jbo:AM (5.8) BS01 rna ? GO:0003735 ... Q8IE09 26432834
    154848 3jbo:AM (5.8) BS02 rna ? GO:0003735 ... Q8IE09 26432834
    154849 3jbo:AN (5.8) BS01 rna ? GO:0003723 ... Q8ILE8 26432834
    154850 3jbo:AO (5.8) BS01 rna ? GO:0003735 ... C6KT23 26432834
    154851 3jbo:AP (5.8) BS01 rna ? GO:0002181 ... C0H4A6 26432834
    154852 3jbo:AP (5.8) BS02 rna ? GO:0002181 ... C0H4A6 26432834
    154853 3jbo:AQ (5.8) BS01 rna ? GO:0003735 ... Q8ILV2 26432834
    154854 3jbo:AQ (5.8) BS02 rna ? GO:0003735 ... Q8ILV2 26432834
    154855 3jbo:AR (5.8) BS01 rna ? GO:0000027 ... Q8ILL3 26432834
    154856 3jbo:AR (5.8) BS02 rna ? GO:0000027 ... Q8ILL3 26432834
    154857 3jbo:AS (5.8) BS01 rna ? GO:0002181 ... C0H5G3 26432834
    154858 3jbo:AT (5.8) BS01 rna ? GO:0003723 ... C6KSY6 26432834
    154859 3jbo:AT (5.8) BS02 rna ? GO:0003723 ... C6KSY6 26432834
    154860 3jbo:AU (5.8) BS01 rna ? GO:0002181 ... Q8IDS6 26432834
    154861 3jbo:AU (5.8) BS02 rna ? GO:0002181 ... Q8IDS6 26432834
    154862 3jbo:AV (5.8) BS01 rna ? GO:0003735 ... Q8ILK3 26432834
    154863 3jbo:AV (5.8) BS02 rna ? GO:0003735 ... Q8ILK3 26432834
    154864 3jbo:AW (5.8) BS01 rna ? GO:0003735 ... Q8IDI5 26432834
    154865 3jbo:AW (5.8) BS02 rna ? GO:0003735 ... Q8IDI5 26432834
    154866 3jbo:AX (5.8) BS01 rna ? GO:0003735 ... Q8IB51 26432834
    154867 3jbo:AY (5.8) BS01 rna ? GO:0003735 ... Q8IE82 26432834
    154868 3jbo:AY (5.8) BS02 rna ? GO:0003735 ... Q8IE82 26432834
    154869 3jbo:AZ (5.8) BS01 rna ? GO:0002181 ... O77364 26432834
    154870 3jbo:AZ (5.8) BS02 rna ? GO:0002181 ... O77364 26432834
    154871 3jbo:Aa (5.8) BS01 rna ? GO:0003735 ... Q8IBY4 26432834
    154872 3jbo:Ab (5.8) BS01 rna ? GO:0002181 ... Q8I713 26432834
    154873 3jbo:Ac (5.8) BS01 rna ? GO:0000448 ... C0H4L5 26432834
    154874 3jbo:Ac (5.8) BS02 rna ? GO:0000448 ... C0H4L5 26432834
    154875 3jbo:Ad (5.8) BS01 rna ? GO:0003735 ... Q8II62 26432834
    154876 3jbo:Ae (5.8) BS01 rna ? GO:0002181 ... C0H4H3 26432834
    154877 3jbo:Ae (5.8) BS02 rna ? GO:0002181 ... C0H4H3 26432834
    154878 3jbo:Af (5.8) BS01 rna ? GO:0003735 ... Q8ID50 26432834
    154879 3jbo:Ag (5.8) BS01 rna ? GO:0003700 ... C6S3G4 26432834
    154880 3jbo:Ah (5.8) BS01 rna ? GO:0003735 ... O96184 26432834
    154881 3jbo:Ah (5.8) BS02 rna ? GO:0003735 ... O96184 26432834
    154882 3jbo:Ai (5.8) BS01 rna ? GO:0002181 ... O97231 26432834
    154883 3jbo:Ai (5.8) BS02 rna ? GO:0002181 ... O97231 26432834
    154884 3jbo:B (5.8) BS01 rna ? GO:0003735 ... O97313 26432834
    154885 3jbo:C (5.8) BS01 rna ? GO:0003735 ... Q8IJD4 26432834
    154886 3jbo:D (5.8) BS01 rna ? GO:0003723 ... Q8IKH8 26432834
    154887 3jbo:E (5.8) BS01 rna ? GO:0003723 ... Q8I3R0 26432834
    154888 3jbo:F (5.8) BS01 rna ? GO:0003723 ... Q8IIU8 26432834
    154889 3jbo:G (5.8) BS01 rna ? GO:0003723 ... Q8IL02 26432834
    154890 3jbo:H (5.8) BS01 rna ? GO:0003735 ... Q8IDR9 26432834
    154891 3jbo:I (5.8) BS01 rna ? GO:0003723 ... Q8IBN5 26432834
    154892 3jbo:J (5.8) BS01 rna ? GO:0003735 ... Q8IET7 26432834
    154893 3jbo:K (5.8) BS01 rna ? GO:0003735 ... O77395 26432834
    154894 3jbo:L (5.8) BS01 rna ? GO:0002181 ... Q8IM10 26432834
    154895 3jbo:L (5.8) BS02 rna ? GO:0002181 ... Q8IM10 26432834
    154896 3jbo:M (5.8) BS01 rna ? GO:0000462 ... Q8IAX5 26432834
    154897 3jbo:N (5.8) BS01 rna ? GO:0003735 ... Q8IK02 26432834
    154898 3jbo:O (5.8) BS01 rna ? N/A Q8IBQ5 26432834
    154899 3jbo:P (5.8) BS01 rna N/A GO:0003735 ... N/A 26432834
    154900 3jbo:Q (5.8) BS01 rna ? GO:0003735 ... O97248 26432834
    154901 3jbo:S (5.8) BS01 rna ? GO:0003676 ... Q8IIA2 26432834
    154902 3jbo:T (5.8) BS01 rna ? GO:0003735 ... C0H4K8 26432834
    154903 3jbo:U (5.8) BS01 rna ? GO:0000462 ... Q8IDB0 26432834
    154904 3jbo:U (5.8) BS02 rna ? GO:0000462 ... Q8IDB0 26432834
    154905 3jbo:V (5.8) BS01 rna ? GO:0003735 ... O77381 26432834
    154906 3jbo:W (5.8) BS01 rna ? GO:0003735 ... Q8I502 26432834
    154907 3jbo:X (5.8) BS01 rna ? GO:0003723 ... C0H5C2 26432834
    154908 3jbo:Y (5.8) BS01 rna ? GO:0003735 ... Q8IFP2 26432834
    154909 3jbp:1 (6.7) BS01 rna ? GO:0002181 ... Q8I3R6 26432834
    154910 3jbp:2 (6.7) BS01 rna ? N/A Q8ILN8 26432834
    154911 3jbp:3 (6.7) BS01 rna ? GO:0003735 ... O96258 26432834
    154912 3jbp:4 (6.7) BS01 rna ? GO:0003735 ... Q8IEN2 26432834
    154913 3jbp:5 (6.7) BS01 rna ? GO:0000028 ... Q8IKL9 26432834
    154914 3jbp:6 (6.7) BS01 rna ? GO:0003735 ... O96269 26432834
    154915 3jbp:A0 (6.7) BS01 rna ? GO:0003735 ... Q8IEM3 26432834
    154916 3jbp:A1 (6.7) BS01 rna ? GO:0003735 ... Q8IKM5 26432834
    154917 3jbp:A2 (6.7) BS01 rna ? GO:0022625 ... Q8IHU0 26432834
    154918 3jbp:A3 (6.7) BS01 rna ? GO:0000463 ... Q8IIB4 26432834
    154919 3jbp:A3 (6.7) BS02 rna ? GO:0000463 ... Q8IIB4 26432834
    154920 3jbp:A4 (6.7) BS01 rna ? GO:0002181 ... C6S3J6 26432834
    154921 3jbp:A5 (6.7) BS01 rna ? GO:0003723 ... O97250 26432834
    154922 3jbp:A5 (6.7) BS02 rna ? GO:0003723 ... O97250 26432834
    154923 3jbp:A6 (6.7) BS01 rna ? GO:0003723 ... Q8IJK8 26432834
    154924 3jbp:A7 (6.7) BS01 rna ? GO:0003735 ... Q8I463 26432834
    154925 3jbp:A8 (6.7) BS01 rna ? GO:0003735 ... Q8I3B0 26432834
    154926 3jbp:A9 (6.7) BS01 rna ? GO:0003735 ... Q8IHT9 26432834
    154927 3jbp:AD (6.7) BS01 rna ? GO:0002181 ... Q8I3T9 26432834
    154928 3jbp:AE (6.7) BS01 rna ? GO:0003723 ... Q8IJC6 26432834
    154929 3jbp:AF (6.7) BS01 rna ? GO:0003723 ... Q8I431 26432834
    154930 3jbp:AF (6.7) BS02 rna ? GO:0003723 ... Q8I431 26432834
    154931 3jbp:AG (6.7) BS01 rna ? GO:0003723 ... Q8IBQ6 26432834
    154932 3jbp:AG (6.7) BS02 rna ? GO:0003723 ... Q8IBQ6 26432834
    154933 3jbp:AH (6.7) BS01 rna ? GO:0002181 ... Q8IE85 26432834
    154934 3jbp:AI (6.7) BS01 rna N/A GO:0003735 ... N/A 26432834
    154935 3jbp:AJ (6.7) BS01 rna ? GO:0003723 ... Q8ILL2 26432834
    154936 3jbp:AK (6.7) BS01 rna ? GO:0003729 ... Q8IJZ7 26432834
    154937 3jbp:AL (6.7) BS01 rna ? GO:0003723 ... Q8IAX6 26432834
    154938 3jbp:AM (6.7) BS01 rna ? GO:0003735 ... Q8IE09 26432834
    154939 3jbp:AN (6.7) BS01 rna ? GO:0003723 ... Q8ILE8 26432834
    154940 3jbp:AO (6.7) BS01 rna ? GO:0003735 ... C6KT23 26432834
    154941 3jbp:AP (6.7) BS01 rna ? GO:0002181 ... C0H4A6 26432834
    154942 3jbp:AP (6.7) BS02 rna ? GO:0002181 ... C0H4A6 26432834
    154943 3jbp:AQ (6.7) BS01 rna ? GO:0003735 ... Q8ILV2 26432834
    154944 3jbp:AQ (6.7) BS02 rna ? GO:0003735 ... Q8ILV2 26432834
    154945 3jbp:AR (6.7) BS01 rna ? GO:0000027 ... Q8ILL3 26432834
    154946 3jbp:AR (6.7) BS02 rna ? GO:0000027 ... Q8ILL3 26432834
    154947 3jbp:AS (6.7) BS01 rna ? GO:0002181 ... C0H5G3 26432834
    154948 3jbp:AT (6.7) BS01 rna ? GO:0003723 ... C6KSY6 26432834
    154949 3jbp:AT (6.7) BS02 rna ? GO:0003723 ... C6KSY6 26432834
    154950 3jbp:AU (6.7) BS01 rna ? GO:0002181 ... Q8IDS6 26432834
    154951 3jbp:AU (6.7) BS02 rna ? GO:0002181 ... Q8IDS6 26432834
    154952 3jbp:AV (6.7) BS01 rna ? GO:0003735 ... Q8ILK3 26432834
    154953 3jbp:AV (6.7) BS02 rna ? GO:0003735 ... Q8ILK3 26432834
    154954 3jbp:AW (6.7) BS01 rna ? GO:0003735 ... Q8IDI5 26432834
    154955 3jbp:AW (6.7) BS02 rna ? GO:0003735 ... Q8IDI5 26432834
    154956 3jbp:AX (6.7) BS01 rna ? GO:0003735 ... Q8IB51 26432834
    154957 3jbp:AY (6.7) BS01 rna ? GO:0003735 ... Q8IE82 26432834
    154958 3jbp:AY (6.7) BS02 rna ? GO:0003735 ... Q8IE82 26432834
    154959 3jbp:AZ (6.7) BS01 rna ? GO:0002181 ... O77364 26432834
    154960 3jbp:AZ (6.7) BS02 rna ? GO:0002181 ... O77364 26432834
    154961 3jbp:Aa (6.7) BS01 rna ? GO:0003735 ... Q8IBY4 26432834
    154962 3jbp:Ab (6.7) BS01 rna ? GO:0002181 ... Q8I713 26432834
    154963 3jbp:Ac (6.7) BS01 rna ? GO:0000448 ... C0H4L5 26432834
    154964 3jbp:Ac (6.7) BS02 rna ? GO:0000448 ... C0H4L5 26432834
    154965 3jbp:Ad (6.7) BS01 rna ? GO:0003735 ... Q8II62 26432834
    154966 3jbp:Ae (6.7) BS01 rna ? GO:0002181 ... C0H4H3 26432834
    154967 3jbp:Ae (6.7) BS02 rna ? GO:0002181 ... C0H4H3 26432834
    154968 3jbp:Af (6.7) BS01 rna ? GO:0003735 ... Q8ID50 26432834
    154969 3jbp:Ag (6.7) BS01 rna ? GO:0003700 ... C6S3G4 26432834
    154970 3jbp:Ag (6.7) BS02 rna ? GO:0003700 ... C6S3G4 26432834
    154971 3jbp:Ah (6.7) BS01 rna ? GO:0003735 ... O96184 26432834
    154972 3jbp:Ai (6.7) BS01 rna ? GO:0002181 ... O97231 26432834
    154973 3jbp:Ai (6.7) BS02 rna ? GO:0002181 ... O97231 26432834
    154974 3jbp:B (6.7) BS01 rna ? GO:0003735 ... O97313 26432834
    154975 3jbp:C (6.7) BS01 rna ? GO:0003735 ... Q8IJD4 26432834
    154976 3jbp:D (6.7) BS01 rna ? GO:0003723 ... Q8IKH8 26432834
    154977 3jbp:E (6.7) BS01 rna ? GO:0003723 ... Q8I3R0 26432834
    154978 3jbp:F (6.7) BS01 rna ? GO:0003723 ... Q8IIU8 26432834
    154979 3jbp:G (6.7) BS01 rna ? GO:0003723 ... Q8IL02 26432834
    154980 3jbp:H (6.7) BS01 rna ? GO:0003735 ... Q8IDR9 26432834
    154981 3jbp:I (6.7) BS01 rna ? GO:0003723 ... Q8IBN5 26432834
    154982 3jbp:J (6.7) BS01 rna ? GO:0003735 ... Q8IET7 26432834
    154983 3jbp:K (6.7) BS01 rna ? GO:0003735 ... O77395 26432834
    154984 3jbp:L (6.7) BS01 rna ? GO:0002181 ... Q8IM10 26432834
    154985 3jbp:L (6.7) BS02 rna ? GO:0002181 ... Q8IM10 26432834
    154986 3jbp:M (6.7) BS01 rna ? GO:0000462 ... Q8IAX5 26432834
    154987 3jbp:N (6.7) BS01 rna ? GO:0003735 ... Q8IK02 26432834
    154988 3jbp:O (6.7) BS01 rna ? N/A Q8IBQ5 26432834
    154989 3jbp:P (6.7) BS01 rna N/A GO:0003735 ... N/A 26432834
    154990 3jbp:Q (6.7) BS01 rna ? GO:0003735 ... O97248 26432834
    154991 3jbp:S (6.7) BS01 rna ? GO:0003676 ... Q8IIA2 26432834
    154992 3jbp:T (6.7) BS01 rna ? GO:0003735 ... C0H4K8 26432834
    154993 3jbp:U (6.7) BS01 rna ? GO:0000462 ... Q8IDB0 26432834
    154994 3jbp:V (6.7) BS01 rna ? GO:0003735 ... O77381 26432834
    154995 3jbp:W (6.7) BS01 rna ? GO:0003735 ... Q8I502 26432834
    154996 3jbp:X (6.7) BS01 rna ? GO:0003723 ... C0H5C2 26432834
    154997 3jbp:Y (6.7) BS01 rna ? GO:0003735 ... Q8IFP2 26432834
    154998 3jbp:Z (6.7) BS01 rna ? GO:0003735 ... Q8IHS5 26432834
    154999 3jbq:B (11.0) BS01 peptide 3.1.4.35 GO:0004114 ... P16586
    Q28156
    25809480
    155000 3jbq:F (11.0) BS01 peptide 3.1.4.35 GO:0004114 ... P16586
    Q28156
    25809480

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).