SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    155001 3jbt:A (3.8) BS01 DTP ? GO:0000166 ... O14727 26543158
    155002 3jbt:A (3.8) BS02 MG ? GO:0000166 ... O14727 26543158
    155003 3jbt:B (3.8) BS01 HEM ? GO:0005515 ... P00004 26543158
    155004 3jbt:C (3.8) BS01 DTP ? GO:0000166 ... O14727 26543158
    155005 3jbt:C (3.8) BS02 MG ? GO:0000166 ... O14727 26543158
    155006 3jbt:D (3.8) BS01 HEM ? GO:0005515 ... P00004 26543158
    155007 3jbt:E (3.8) BS01 DTP ? GO:0000166 ... O14727 26543158
    155008 3jbt:E (3.8) BS02 MG ? GO:0000166 ... O14727 26543158
    155009 3jbt:F (3.8) BS01 HEM ? GO:0005515 ... P00004 26543158
    155010 3jbt:G (3.8) BS01 DTP ? GO:0000166 ... O14727 26543158
    155011 3jbt:G (3.8) BS02 MG ? GO:0000166 ... O14727 26543158
    155012 3jbt:H (3.8) BS01 HEM ? GO:0005515 ... P00004 26543158
    155013 3jbt:I (3.8) BS01 DTP ? GO:0000166 ... O14727 26543158
    155014 3jbt:I (3.8) BS02 MG ? GO:0000166 ... O14727 26543158
    155015 3jbt:J (3.8) BS01 HEM ? GO:0005515 ... P00004 26543158
    155016 3jbt:K (3.8) BS01 DTP ? GO:0000166 ... O14727 26543158
    155017 3jbt:K (3.8) BS02 MG ? GO:0000166 ... O14727 26543158
    155018 3jbt:L (3.8) BS01 HEM ? GO:0005515 ... P00004 26543158
    155019 3jbt:M (3.8) BS01 DTP ? GO:0000166 ... O14727 26543158
    155020 3jbt:M (3.8) BS02 MG ? GO:0000166 ... O14727 26543158
    155021 3jbt:N (3.8) BS01 HEM ? GO:0005515 ... P00004 26543158
    155022 3jbu:0 (3.64) BS01 rna ? GO:0000027 ... P0A7M2 26670735
    155023 3jbu:1 (3.64) BS01 rna ? GO:0000027 ... P0A7M6 26670735
    155024 3jbu:2 (3.64) BS01 rna ? GO:0000027 ... P0AG51 26670735
    155025 3jbu:2 (3.64) BS02 rna ? GO:0000027 ... P0AG51 26670735
    155026 3jbu:3 (3.64) BS01 rna ? GO:0000027 ... P0A7N4 26670735
    155027 3jbu:4 (3.64) BS01 rna ? GO:0000027 ... P0A7N9 26670735
    155028 3jbu:6 (3.64) BS01 rna ? GO:0002181 ... P0A7P5 26670735
    155029 3jbu:7 (3.64) BS01 rna ? GO:0002181 ... P0A7Q1 26670735
    155030 3jbu:8 (3.64) BS01 rna ? GO:0002181 ... P0A7Q6 26670735
    155031 3jbu:B (3.64) BS01 rna ? GO:0000028 ... P0A7V0 26670735
    155032 3jbu:C (3.64) BS01 rna ? GO:0000028 ... P0A7V3 26670735
    155033 3jbu:D (3.64) BS01 rna ? GO:0000028 ... P0A7V8 26670735
    155034 3jbu:E (3.64) BS01 rna ? GO:0000028 ... P0A7W1 26670735
    155035 3jbu:F (3.64) BS01 rna ? GO:0002181 ... P02358 26670735
    155036 3jbu:G (3.64) BS01 rna ? GO:0003723 ... P02359 26670735
    155037 3jbu:H (3.64) BS01 rna ? GO:0000028 ... P0A7W7 26670735
    155038 3jbu:I (3.64) BS01 rna ? GO:0002181 ... P0A7X3 26670735
    155039 3jbu:I (3.64) BS02 rna ? GO:0002181 ... P0A7X3 26670735
    155040 3jbu:J (3.64) BS01 rna ? GO:0000049 ... P0A7R5 26670735
    155041 3jbu:K (3.64) BS01 rna ? GO:0002181 ... P0A7R9 26670735
    155042 3jbu:L (3.64) BS01 rna ? GO:0000049 ... P0A7S3 26670735
    155043 3jbu:M (3.64) BS01 rna ? GO:0000049 ... P0A7S9 26670735
    155044 3jbu:M (3.64) BS02 rna ? GO:0000049 ... P0A7S9 26670735
    155045 3jbu:N (3.64) BS01 rna ? GO:0000028 ... P0AG59 26670735
    155046 3jbu:O (3.64) BS01 rna ? GO:0000028 ... P0ADZ4 26670735
    155047 3jbu:O (3.64) BS02 rna ? GO:0000028 ... P0ADZ4 26670735
    155048 3jbu:P (3.64) BS01 rna ? GO:0000028 ... P0A7T3 26670735
    155049 3jbu:Q (3.64) BS01 rna ? GO:0000028 ... P0AG63 26670735
    155050 3jbu:R (3.64) BS01 rna ? GO:0002181 ... P0A7T7 26670735
    155051 3jbu:S (3.64) BS01 rna ? GO:0002181 ... P0A7U3 26670735
    155052 3jbu:T (3.64) BS01 rna ? GO:0000028 ... P0A7U7 26670735
    155053 3jbu:U (3.64) BS01 rna ? GO:0000028 ... P68679 26670735
    155054 3jbu:c (3.64) BS01 rna ? GO:0000027 ... P60422 26670735
    155055 3jbu:d (3.64) BS01 rna ? GO:0000027 ... P60438 26670735
    155056 3jbu:e (3.64) BS01 rna ? GO:0001070 ... P60723 26670735
    155057 3jbu:f (3.64) BS01 rna ? GO:0000027 ... P62399 26670735
    155058 3jbu:f (3.64) BS02 rna ? GO:0000027 ... P62399 26670735
    155059 3jbu:f (3.64) BS03 rna ? GO:0000027 ... P62399 26670735
    155060 3jbu:g (3.64) BS01 rna ? GO:0000027 ... P0AG55 26670735
    155061 3jbu:h (3.64) BS01 rna ? GO:0002181 ... P0A7R1 26670735
    155062 3jbu:j (3.64) BS01 rna ? GO:0002181 ... P0AA10 26670735
    155063 3jbu:k (3.64) BS01 rna ? GO:0002181 ... P0ADY3 26670735
    155064 3jbu:l (3.64) BS01 rna ? GO:0002181 ... P02413 26670735
    155065 3jbu:m (3.64) BS01 rna ? GO:0000027 ... P0ADY7 26670735
    155066 3jbu:m (3.64) BS02 rna ? GO:0000027 ... P0ADY7 26670735
    155067 3jbu:n (3.64) BS01 rna ? GO:0000027 ... P0AG44 26670735
    155068 3jbu:o (3.64) BS01 rna ? GO:0002181 ... P0C018 26670735
    155069 3jbu:o (3.64) BS02 rna ? GO:0002181 ... P0C018 26670735
    155070 3jbu:p (3.64) BS01 rna ? GO:0000027 ... P0A7K6 26670735
    155071 3jbu:p (3.64) BS02 rna ? GO:0000027 ... P0A7K6 26670735
    155072 3jbu:q (3.64) BS01 rna ? GO:0000027 ... P0A7L3 26670735
    155073 3jbu:r (3.64) BS01 rna ? GO:0002181 ... P0AG48 26670735
    155074 3jbu:s (3.64) BS01 peptide ? GO:0002181 ... P61175 26670735
    155075 3jbu:s (3.64) BS02 rna ? GO:0002181 ... P61175 26670735
    155076 3jbu:t (3.64) BS01 rna ? GO:0000027 ... P0ADZ0 26670735
    155077 3jbu:u (3.64) BS01 rna ? GO:0000027 ... P60624 26670735
    155078 3jbu:w (3.64) BS01 rna ? GO:0000027 ... P68919 26670735
    155079 3jbu:y (3.64) BS01 rna ? GO:0000027 ... P0A7L8 26670735
    155080 3jbu:y (3.64) BS02 rna ? GO:0000027 ... P0A7L8 26670735
    155081 3jbv:0 (3.32) BS01 rna ? GO:0000027 ... P0A7M2 26670735
    155082 3jbv:1 (3.32) BS01 rna ? GO:0000027 ... P0A7M6 26670735
    155083 3jbv:2 (3.32) BS01 rna ? GO:0000027 ... P0AG51 26670735
    155084 3jbv:3 (3.32) BS01 rna ? GO:0000027 ... P0A7N4 26670735
    155085 3jbv:4 (3.32) BS01 rna ? GO:0000027 ... P0A7N9 26670735
    155086 3jbv:6 (3.32) BS01 rna ? GO:0002181 ... P0A7P5 26670735
    155087 3jbv:7 (3.32) BS01 rna ? GO:0002181 ... P0A7Q1 26670735
    155088 3jbv:8 (3.32) BS01 rna ? GO:0002181 ... P0A7Q6 26670735
    155089 3jbv:B (3.32) BS01 rna ? GO:0000028 ... P0A7V0 26670735
    155090 3jbv:C (3.32) BS01 rna ? GO:0000028 ... P0A7V3 26670735
    155091 3jbv:C (3.32) BS02 rna ? GO:0000028 ... P0A7V3 26670735
    155092 3jbv:D (3.32) BS01 rna ? GO:0000028 ... P0A7V8 26670735
    155093 3jbv:E (3.32) BS01 rna ? GO:0000028 ... P0A7W1 26670735
    155094 3jbv:F (3.32) BS01 rna ? GO:0002181 ... P02358 26670735
    155095 3jbv:G (3.32) BS01 rna ? GO:0003723 ... C4ZUJ6 26670735
    155096 3jbv:H (3.32) BS01 rna ? GO:0000028 ... P0A7W7 26670735
    155097 3jbv:I (3.32) BS01 rna ? GO:0002181 ... P0A7X3 26670735
    155098 3jbv:I (3.32) BS02 rna ? GO:0002181 ... P0A7X3 26670735
    155099 3jbv:J (3.32) BS01 rna ? GO:0000049 ... P0A7R5 26670735
    155100 3jbv:K (3.32) BS01 rna ? GO:0002181 ... P0A7R9 26670735
    155101 3jbv:L (3.32) BS01 rna ? GO:0000049 ... P0A7S3 26670735
    155102 3jbv:M (3.32) BS01 rna ? GO:0000049 ... P0A7S9 26670735
    155103 3jbv:N (3.32) BS01 rna ? GO:0000028 ... P0AG59 26670735
    155104 3jbv:O (3.32) BS01 rna ? GO:0003735 ... Q8X9M2 26670735
    155105 3jbv:O (3.32) BS02 rna ? GO:0003735 ... Q8X9M2 26670735
    155106 3jbv:P (3.32) BS01 rna ? GO:0000028 ... P0A7T3 26670735
    155107 3jbv:Q (3.32) BS01 rna ? GO:0000028 ... P0AG63 26670735
    155108 3jbv:R (3.32) BS01 rna ? GO:0002181 ... P0A7T7 26670735
    155109 3jbv:S (3.32) BS01 rna ? GO:0002181 ... P0A7U3 26670735
    155110 3jbv:T (3.32) BS01 rna ? GO:0000028 ... P0A7U7 26670735
    155111 3jbv:U (3.32) BS01 rna ? GO:0000028 ... P68679 26670735
    155112 3jbv:c (3.32) BS01 rna ? GO:0000027 ... P60422 26670735
    155113 3jbv:c (3.32) BS02 rna ? GO:0000027 ... P60422 26670735
    155114 3jbv:d (3.32) BS01 rna ? GO:0000027 ... P60438 26670735
    155115 3jbv:e (3.32) BS01 rna ? GO:0001070 ... P60723 26670735
    155116 3jbv:e (3.32) BS02 peptide ? GO:0001070 ... P60723 26670735
    155117 3jbv:f (3.32) BS01 rna ? GO:0000027 ... P62399 26670735
    155118 3jbv:f (3.32) BS02 rna ? GO:0000027 ... P62399 26670735
    155119 3jbv:g (3.32) BS01 rna ? GO:0000027 ... P0AG55 26670735
    155120 3jbv:h (3.32) BS01 rna ? GO:0002181 ... P0A7R1 26670735
    155121 3jbv:i (3.32) BS01 rna ? GO:0000027 ... P0A7J7 26670735
    155122 3jbv:j (3.32) BS01 rna ? GO:0002181 ... P0AA10 26670735
    155123 3jbv:k (3.32) BS01 rna ? GO:0002181 ... P0ADY3 26670735
    155124 3jbv:k (3.32) BS02 rna ? GO:0002181 ... P0ADY3 26670735
    155125 3jbv:l (3.32) BS01 rna ? GO:0002181 ... P02413 26670735
    155126 3jbv:m (3.32) BS01 rna ? GO:0000027 ... P0ADY7 26670735
    155127 3jbv:m (3.32) BS02 rna ? GO:0000027 ... P0ADY7 26670735
    155128 3jbv:n (3.32) BS01 rna ? GO:0000027 ... P0AG44 26670735
    155129 3jbv:o (3.32) BS01 rna ? GO:0002181 ... P0C018 26670735
    155130 3jbv:o (3.32) BS02 rna ? GO:0002181 ... P0C018 26670735
    155131 3jbv:p (3.32) BS01 rna ? GO:0000027 ... P0A7K6 26670735
    155132 3jbv:p (3.32) BS02 rna ? GO:0000027 ... P0A7K6 26670735
    155133 3jbv:q (3.32) BS01 rna ? GO:0000027 ... P0A7L3 26670735
    155134 3jbv:r (3.32) BS01 rna ? GO:0002181 ... P0AG48 26670735
    155135 3jbv:s (3.32) BS01 rna ? GO:0002181 ... P61175 26670735
    155136 3jbv:s (3.32) BS02 peptide ? GO:0002181 ... P61175 26670735
    155137 3jbv:t (3.32) BS01 rna ? GO:0000027 ... P0ADZ0 26670735
    155138 3jbv:u (3.32) BS01 rna ? GO:0000027 ... P60624 26670735
    155139 3jbv:w (3.32) BS01 rna ? GO:0000027 ... P68919 26670735
    155140 3jbv:y (3.32) BS01 rna ? GO:0000027 ... P0A7L8 26670735
    155141 3jbv:y (3.32) BS02 rna ? GO:0000027 ... P0A7L8 26670735
    155142 3jbw:A (4.6) BS01 dna 2.3.2.27
    3.1.-.-
    GO:0004519 ... O13033 26548953
    155143 3jbw:A (4.6) BS02 dna 2.3.2.27
    3.1.-.-
    GO:0004519 ... O13033 26548953
    155144 3jbw:A (4.6) BS03 dna 2.3.2.27
    3.1.-.-
    GO:0004519 ... O13033 26548953
    155145 3jbw:A (4.6) BS04 dna 2.3.2.27
    3.1.-.-
    GO:0004519 ... O13033 26548953
    155146 3jbw:A (4.6) BS05 dna 2.3.2.27
    3.1.-.-
    GO:0004519 ... O13033 26548953
    155147 3jbw:A (4.6) BS06 ZN 2.3.2.27
    3.1.-.-
    GO:0004519 ... O13033 26548953
    155148 3jbw:B (4.6) BS01 dna ? GO:0003677 ... O13034 26548953
    155149 3jbw:B (4.6) BS02 dna ? GO:0003677 ... O13034 26548953
    155150 3jbw:C (4.6) BS01 dna 2.3.2.27
    3.1.-.-
    GO:0004519 ... O13033 26548953
    155151 3jbw:C (4.6) BS02 dna 2.3.2.27
    3.1.-.-
    GO:0004519 ... O13033 26548953
    155152 3jbw:C (4.6) BS03 dna 2.3.2.27
    3.1.-.-
    GO:0004519 ... O13033 26548953
    155153 3jbw:C (4.6) BS04 dna 2.3.2.27
    3.1.-.-
    GO:0004519 ... O13033 26548953
    155154 3jbw:C (4.6) BS05 dna 2.3.2.27
    3.1.-.-
    GO:0004519 ... O13033 26548953
    155155 3jbw:C (4.6) BS06 ZN 2.3.2.27
    3.1.-.-
    GO:0004519 ... O13033 26548953
    155156 3jbw:D (4.6) BS01 dna ? GO:0003677 ... O13034 26548953
    155157 3jbw:D (4.6) BS02 dna ? GO:0003677 ... O13034 26548953
    155158 3jbx:A (3.4) BS01 dna 2.3.2.27
    3.1.-.-
    GO:0004519 ... O13033 26548953
    155159 3jbx:A (3.4) BS02 dna 2.3.2.27
    3.1.-.-
    GO:0004519 ... O13033 26548953
    155160 3jbx:A (3.4) BS03 dna 2.3.2.27
    3.1.-.-
    GO:0004519 ... O13033 26548953
    155161 3jbx:A (3.4) BS04 dna 2.3.2.27
    3.1.-.-
    GO:0004519 ... O13033 26548953
    155162 3jbx:A (3.4) BS05 dna 2.3.2.27
    3.1.-.-
    GO:0004519 ... O13033 26548953
    155163 3jbx:A (3.4) BS06 dna 2.3.2.27
    3.1.-.-
    GO:0004519 ... O13033 26548953
    155164 3jbx:A (3.4) BS07 ZN 2.3.2.27
    3.1.-.-
    GO:0004519 ... O13033 26548953
    155165 3jbx:A (3.4) BS08 MG 2.3.2.27
    3.1.-.-
    GO:0004519 ... O13033 26548953
    155166 3jbx:B (3.4) BS01 dna ? GO:0003677 ... O13034 26548953
    155167 3jbx:B (3.4) BS02 dna ? GO:0003677 ... O13034 26548953
    155168 3jbx:C (3.4) BS01 dna 2.3.2.27
    3.1.-.-
    GO:0004519 ... O13033 26548953
    155169 3jbx:C (3.4) BS02 dna 2.3.2.27
    3.1.-.-
    GO:0004519 ... O13033 26548953
    155170 3jbx:C (3.4) BS03 dna 2.3.2.27
    3.1.-.-
    GO:0004519 ... O13033 26548953
    155171 3jbx:C (3.4) BS04 dna 2.3.2.27
    3.1.-.-
    GO:0004519 ... O13033 26548953
    155172 3jbx:C (3.4) BS05 dna 2.3.2.27
    3.1.-.-
    GO:0004519 ... O13033 26548953
    155173 3jbx:C (3.4) BS06 dna 2.3.2.27
    3.1.-.-
    GO:0004519 ... O13033 26548953
    155174 3jbx:C (3.4) BS07 ZN 2.3.2.27
    3.1.-.-
    GO:0004519 ... O13033 26548953
    155175 3jbx:C (3.4) BS08 MG 2.3.2.27
    3.1.-.-
    GO:0004519 ... O13033 26548953
    155176 3jbx:D (3.4) BS01 dna ? GO:0003677 ... O13034 26548953
    155177 3jbx:D (3.4) BS02 dna ? GO:0003677 ... O13034 26548953
    155178 3jby:A (3.7) BS01 dna 2.3.2.27
    3.1.-.-
    GO:0004519 ... O13033 26548953
    155179 3jby:A (3.7) BS02 dna 2.3.2.27
    3.1.-.-
    GO:0004519 ... O13033 26548953
    155180 3jby:A (3.7) BS03 dna 2.3.2.27
    3.1.-.-
    GO:0004519 ... O13033 26548953
    155181 3jby:A (3.7) BS04 dna 2.3.2.27
    3.1.-.-
    GO:0004519 ... O13033 26548953
    155182 3jby:A (3.7) BS05 dna 2.3.2.27
    3.1.-.-
    GO:0004519 ... O13033 26548953
    155183 3jby:A (3.7) BS06 ZN 2.3.2.27
    3.1.-.-
    GO:0004519 ... O13033 26548953
    155184 3jby:A (3.7) BS07 CA 2.3.2.27
    3.1.-.-
    GO:0004519 ... O13033 26548953
    155185 3jby:A (3.7) BS08 CA 2.3.2.27
    3.1.-.-
    GO:0004519 ... O13033 26548953
    155186 3jby:B (3.7) BS01 dna ? GO:0003677 ... O13034 26548953
    155187 3jby:B (3.7) BS02 dna ? GO:0003677 ... O13034 26548953
    155188 3jby:C (3.7) BS01 dna 2.3.2.27
    3.1.-.-
    GO:0004519 ... O13033 26548953
    155189 3jby:C (3.7) BS02 dna 2.3.2.27
    3.1.-.-
    GO:0004519 ... O13033 26548953
    155190 3jby:C (3.7) BS03 dna 2.3.2.27
    3.1.-.-
    GO:0004519 ... O13033 26548953
    155191 3jby:C (3.7) BS04 dna 2.3.2.27
    3.1.-.-
    GO:0004519 ... O13033 26548953
    155192 3jby:C (3.7) BS05 dna 2.3.2.27
    3.1.-.-
    GO:0004519 ... O13033 26548953
    155193 3jby:C (3.7) BS06 ZN 2.3.2.27
    3.1.-.-
    GO:0004519 ... O13033 26548953
    155194 3jby:C (3.7) BS07 CA 2.3.2.27
    3.1.-.-
    GO:0004519 ... O13033 26548953
    155195 3jby:C (3.7) BS08 CA 2.3.2.27
    3.1.-.-
    GO:0004519 ... O13033 26548953
    155196 3jby:D (3.7) BS01 dna ? GO:0003677 ... O13034 26548953
    155197 3jby:D (3.7) BS02 dna ? GO:0003677 ... O13034 26548953
    155198 3jbz:A (28.0) BS01 ADP 2.7.11.1 GO:0004674 ... P42345 27097373
    155199 3jbz:A (28.0) BS02 MGF 2.7.11.1 GO:0004674 ... P42345 27097373
    155200 3jc2:1 (3.6) BS01 peptide ? GO:0005048 ... P38377 26721998

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).