SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1401 13yl:A (1.83) BS02 Q4L N/A N/A F1T146 N/A
    1402 13ym:A (1.34) BS01 W0M N/A N/A F1T146 N/A
    1403 13yn:A (1.77) BS01 A1AND N/A N/A F1T146 N/A
    1404 13yo:A (1.47) BS01 VVY N/A N/A F1T146 N/A
    1405 13yp:A (1.57) BS01 TT3 N/A N/A F1T146 N/A
    1406 13yq:A (1.34) BS01 O1M N/A N/A F1T146 N/A
    1407 13yq:A (1.34) BS02 O1M N/A N/A F1T146 N/A
    1408 13yr:A (1.83) BS01 LJA N/A N/A F1T146 N/A
    1409 13ys:A (1.41) BS01 A1C9Z N/A N/A F1T146 N/A
    1410 13yt:A (1.71) BS01 A1BE7 N/A N/A F1T146 N/A
    1411 13yu:A (1.46) BS01 A1C90 N/A N/A F1T146 N/A
    1412 13yu:A (1.46) BS02 A1C90 N/A N/A F1T146 N/A
    1413 13yu:A (1.46) BS03 A1C90 N/A N/A F1T146 N/A
    1414 13yu:A (1.46) BS04 A1C90 N/A N/A F1T146 N/A
    1415 13yv:A (1.34) BS01 K0M N/A N/A F1T146 N/A
    1416 13yv:A (1.34) BS02 K0M N/A N/A F1T146 N/A
    1417 13yw:A (1.77) BS01 GQP N/A N/A F1T146 N/A
    1418 13yx:A (1.55) BS01 NZ4 N/A N/A F1T146 N/A
    1419 13yy:A (1.34) BS01 JHP N/A N/A F1T146 N/A
    1420 13yz:A (1.45) BS01 KB3 N/A N/A F1T146 N/A
    1421 13yz:A (1.45) BS02 KB3 N/A N/A F1T146 N/A
    1422 13za:A (1.4) BS01 A1C92 N/A N/A F1T146 N/A
    1423 13zb:A (1.44) BS01 UVA N/A N/A F1T146 N/A
    1424 13zb:A (1.44) BS02 UVA N/A N/A F1T146 N/A
    1425 13zc:A (1.43) BS01 A1C91 N/A N/A F1T146 N/A
    1426 13zc:A (1.43) BS02 A1C91 N/A N/A F1T146 N/A
    1427 13zd:A (1.59) BS01 GX4 N/A N/A F1T146 N/A
    1428 13ze:A (1.42) BS01 UXA N/A N/A F1T146 N/A
    1429 13zf:A (1.66) BS01 A1BFG N/A N/A F1T146 N/A
    1430 13zg:A (1.34) BS01 A1BFI N/A N/A F1T146 N/A
    1431 13zg:A (1.34) BS02 A1BFI N/A N/A F1T146 N/A
    1432 13zh:A (1.66) BS01 SZX N/A N/A F1T146 N/A
    1433 13zi:A (1.34) BS01 A1BMW N/A N/A F1T146 N/A
    1434 13zj:A (1.5) BS01 A1C93 N/A N/A F1T146 N/A
    1435 13zk:A (1.38) BS01 WL7 N/A N/A F1T146 N/A
    1436 13zk:A (1.38) BS02 WL7 N/A N/A F1T146 N/A
    1437 13zl:A (1.34) BS01 NY4 N/A N/A F1T146 N/A
    1438 13zm:A (1.34) BS01 UQS N/A N/A F1T146 N/A
    1439 13zo:A (1.51) BS01 UXJ N/A N/A F1T146 N/A
    1440 13zp:A (1.72) BS01 X0S N/A N/A F1T146 N/A
    1441 13zp:A (1.72) BS02 X0S N/A N/A F1T146 N/A
    1442 13zq:A (1.8) BS01 JGG N/A N/A F1T146 N/A
    1443 13zr:A (1.5) BS01 STV N/A N/A F1T146 N/A
    1444 13zs:A (1.6) BS01 NX7 N/A N/A F1T146 N/A
    1445 13zt:A (1.34) BS01 ZV2 N/A N/A F1T146 N/A
    1446 13zt:A (1.34) BS02 ZV2 N/A N/A F1T146 N/A
    1447 13zu:A (1.51) BS01 A1ANC N/A N/A F1T146 N/A
    1448 13zw:A (1.78) BS01 A1C95 N/A N/A F1T146 N/A
    1449 13zx:A (1.48) BS01 A1BDK N/A N/A F1T146 N/A
    1450 13zy:A (1.34) BS01 B0V N/A N/A F1T146 N/A
    1451 13zz:A (1.52) BS01 RX7 N/A N/A F1T146 N/A
    1452 148l:E (1.9) BS01 peptide 3.2.1.17 GO:0003796 ... P00720 8266098
    1453 148l:E (1.9) BS02 MUB 3.2.1.17 GO:0003796 ... P00720 8266098
    1454 155c:A (2.5) BS01 HEM ? GO:0009055 ... P00096 180013
    1455 16pk:A (1.6) BS01 BIS 2.7.2.3 GO:0004618 ... P07378 9642090
    1456 17gs:A (1.9) BS01 GTX 2.5.1.18 GO:0000122 ... P09211 N/A
    1457 17gs:B (1.9) BS01 GTX 2.5.1.18 GO:0000122 ... P09211 N/A
    1458 182l:A (1.8) BS01 BZF 3.2.1.17 GO:0003796 ... P00720 7612599 MOAD: Ka=8900M^-1
    1459 183l:A (1.8) BS01 DEN 3.2.1.17 GO:0003796 ... P00720 7612599 MOAD: Ka=5170M^-1
    1460 184l:A (1.8) BS01 I4B 3.2.1.17 GO:0003796 ... P00720 7612599 MOAD: Ka=51000M^-1
    1461 185l:A (1.8) BS01 IND 3.2.1.17 GO:0003796 ... P00720 7612599 MOAD: Kd=289uM
    1462 186l:A (1.8) BS01 N4B 3.2.1.17 GO:0003796 ... P00720 7612599 MOAD: Kd=14uM
    1463 187l:A (1.8) BS01 PXY 3.2.1.17 GO:0003796 ... P00720 7612599 MOAD: Kd=422uM
    BindingDB: Kd=151000nM
    1464 188l:A (1.8) BS01 OXE 3.2.1.17 GO:0003796 ... P00720 7612599 MOAD: Kd=469uM
    1465 18gs:A (1.9) BS01 GDN 2.5.1.18 GO:0000122 ... P09211 10452896
    1466 18gs:B (1.9) BS01 GDN 2.5.1.18 GO:0000122 ... P09211 10452896
    1467 193l:A (1.33) BS01 NA 3.2.1.17 GO:0003796 ... P00698 15299672
    1468 194l:A (1.4) BS01 NA 3.2.1.17 GO:0003796 ... P00698 15299672
    1469 19gs:A (1.9) BS01 BSP 2.5.1.18 GO:0000122 ... P09211 10452896
    1470 19gs:A (1.9) BS02 GSH 2.5.1.18 GO:0000122 ... P09211 10452896
    1471 19gs:B (1.9) BS01 BSP 2.5.1.18 GO:0000122 ... P09211 10452896
    1472 19gs:B (1.9) BS02 GSH 2.5.1.18 GO:0000122 ... P09211 10452896
    1473 19hc:A (1.8) BS01 HEM ? GO:0009055 ... Q9RN68 10368280
    1474 19hc:A (1.8) BS02 HEM ? GO:0009055 ... Q9RN68 10368280
    1475 19hc:A (1.8) BS03 HEM ? GO:0009055 ... Q9RN68 10368280
    1476 19hc:A (1.8) BS04 HEM ? GO:0009055 ... Q9RN68 10368280
    1477 19hc:A (1.8) BS05 HEM ? GO:0009055 ... Q9RN68 10368280
    1478 19hc:A (1.8) BS06 HEM ? GO:0009055 ... Q9RN68 10368280
    1479 19hc:A (1.8) BS07 HEM ? GO:0009055 ... Q9RN68 10368280
    1480 19hc:A (1.8) BS08 HEM ? GO:0009055 ... Q9RN68 10368280
    1481 19hc:A (1.8) BS09 HEM ? GO:0009055 ... Q9RN68 10368280
    1482 19hc:A (1.8) BS10 HEM ? GO:0009055 ... Q9RN68 10368280
    1483 19hc:B (1.8) BS01 HEM ? GO:0009055 ... Q9RN68 10368280
    1484 19hc:B (1.8) BS02 HEM ? GO:0009055 ... Q9RN68 10368280
    1485 19hc:B (1.8) BS03 HEM ? GO:0009055 ... Q9RN68 10368280
    1486 19hc:B (1.8) BS04 HEM ? GO:0009055 ... Q9RN68 10368280
    1487 19hc:B (1.8) BS05 HEM ? GO:0009055 ... Q9RN68 10368280
    1488 19hc:B (1.8) BS06 HEM ? GO:0009055 ... Q9RN68 10368280
    1489 19hc:B (1.8) BS07 HEM ? GO:0009055 ... Q9RN68 10368280
    1490 19hc:B (1.8) BS08 HEM ? GO:0009055 ... Q9RN68 10368280
    1491 19hc:B (1.8) BS09 HEM ? GO:0009055 ... Q9RN68 10368280
    1492 1a00:A (2.0) BS01 HEM ? GO:0004601 ... P69905 9521756
    1493 1a00:B (2.0) BS01 HEM ? GO:0004601 ... P68871 9521756
    1494 1a00:C (2.0) BS01 HEM ? GO:0004601 ... P69905 9521756
    1495 1a00:D (2.0) BS01 HEM ? GO:0004601 ... P68871 9521756
    1496 1a01:A (1.8) BS01 HEM ? GO:0004601 ... P69905 9521756
    1497 1a01:B (1.8) BS01 HEM ? GO:0004601 ... P68871 9521756
    1498 1a01:C (1.8) BS01 HEM ? GO:0004601 ... P69905 9521756
    1499 1a01:D (1.8) BS01 HEM ? GO:0004601 ... P68871 9521756
    1500 1a02:F (2.7) BS01 dna ? GO:0003677 ... P01100 9510247
    1501 1a02:F (2.7) BS02 dna ? GO:0003677 ... P01100 9510247
    1502 1a02:J (2.7) BS01 dna ? GO:0003677 ... P05412 9510247
    1503 1a02:J (2.7) BS02 dna ? GO:0003677 ... P05412 9510247
    1504 1a02:N (2.7) BS01 dna ? GO:0003677 ... Q13469 9510247
    1505 1a02:N (2.7) BS02 dna ? GO:0003677 ... Q13469 9510247
    1506 1a05:A (2.0) BS01 IPM 1.1.1.85 GO:0000287 ... Q56268 9739088
    1507 1a05:B (2.0) BS01 IPM 1.1.1.85 GO:0000287 ... Q56268 9739088
    1508 1a07:A (2.2) BS01 peptide 2.7.10.2 N/A P12931 9174343
    1509 1a07:B (2.2) BS01 peptide 2.7.10.2 N/A P12931 9174343
    1510 1a08:A (2.2) BS01 peptide 2.7.10.2 N/A P12931 9174343
    1511 1a08:B (2.2) BS01 peptide 2.7.10.2 N/A P12931 9174343
    1512 1a09:A (2.0) BS01 peptide 2.7.10.2 N/A P12931 9174343
    1513 1a09:B (2.0) BS01 peptide 2.7.10.2 N/A P12931 9174343
    1514 1a0a:A (2.8) BS01 dna ? GO:0046983 ... P07270 9303313
    1515 1a0a:A (2.8) BS02 dna ? GO:0046983 ... P07270 9303313
    1516 1a0a:B (2.8) BS01 dna ? GO:0046983 ... P07270 9303313
    1517 1a0a:B (2.8) BS02 dna ? GO:0046983 ... P07270 9303313
    1518 1a0b:A (2.06) BS01 ZN 2.7.13.3 GO:0000160 ... P0AEC3 9054511
    1519 1a0c:A (2.5) BS01 CO 5.3.1.5 GO:0000287 ... P19148 N/A
    1520 1a0c:A (2.5) BS02 CO 5.3.1.5 GO:0000287 ... P19148 N/A
    1521 1a0c:B (2.5) BS01 CO 5.3.1.5 GO:0000287 ... P19148 N/A
    1522 1a0c:B (2.5) BS02 CO 5.3.1.5 GO:0000287 ... P19148 N/A
    1523 1a0c:C (2.5) BS01 CO 5.3.1.5 GO:0000287 ... P19148 N/A
    1524 1a0c:C (2.5) BS02 CO 5.3.1.5 GO:0000287 ... P19148 N/A
    1525 1a0c:D (2.5) BS01 CO 5.3.1.5 GO:0000287 ... P19148 N/A
    1526 1a0c:D (2.5) BS02 CO 5.3.1.5 GO:0000287 ... P19148 N/A
    1527 1a0d:A (3.0) BS01 MN 5.3.1.5 GO:0000287 ... P54273 N/A
    1528 1a0d:A (3.0) BS02 MN 5.3.1.5 GO:0000287 ... P54273 N/A
    1529 1a0d:B (3.0) BS01 MN 5.3.1.5 GO:0000287 ... P54273 N/A
    1530 1a0d:B (3.0) BS02 MN 5.3.1.5 GO:0000287 ... P54273 N/A
    1531 1a0d:C (3.0) BS01 MN 5.3.1.5 GO:0000287 ... P54273 N/A
    1532 1a0d:C (3.0) BS02 MN 5.3.1.5 GO:0000287 ... P54273 N/A
    1533 1a0d:D (3.0) BS01 MN 5.3.1.5 GO:0000287 ... P54273 N/A
    1534 1a0d:D (3.0) BS02 MN 5.3.1.5 GO:0000287 ... P54273 N/A
    1535 1a0e:A (2.7) BS01 CO 5.3.1.5 GO:0000287 ... P45687 N/A
    1536 1a0e:A (2.7) BS02 CO 5.3.1.5 GO:0000287 ... P45687 N/A
    1537 1a0e:D (2.7) BS01 CO 5.3.1.5 GO:0000287 ... P45687 N/A
    1538 1a0e:D (2.7) BS02 CO 5.3.1.5 GO:0000287 ... P45687 N/A
    1539 1a0f:A (2.1) BS01 GTS 2.5.1.18 GO:0004364 ... P0A9D2 9680481
    1540 1a0f:B (2.1) BS01 GTS 2.5.1.18 GO:0004364 ... P0A9D2 9680481
    1541 1a0g:A (2.0) BS01 PMP 2.6.1.21 GO:0003824 ... P19938 9749913
    1542 1a0g:B (2.0) BS01 PMP 2.6.1.21 GO:0003824 ... P19938 9749913
    1543 1a0h:B (3.2) BS01 0G6 3.4.21.5 GO:0004252 ... P00735 9438869
    1544 1a0h:E (3.2) BS01 0G6 3.4.21.5 GO:0004252 ... P00735 9438869
    1545 1a0i:A (2.6) BS01 ATP 6.5.1.1 GO:0000166 ... P00969 8653795
    1546 1a0j:A (1.7) BS01 CA 3.4.21.4 GO:0004252 ... P35033 9757092
    1547 1a0l:A (3.0) BS01 APA 3.4.21.59 GO:0004252 ... P20231 9521329
    1548 1a0l:B (3.0) BS01 APA 3.4.21.59 GO:0004252 ... P20231 9521329
    1549 1a0l:C (3.0) BS01 APA 3.4.21.59 GO:0004252 ... P20231 9521329
    1550 1a0l:D (3.0) BS01 APA 3.4.21.59 GO:0004252 ... P20231 9521329
    1551 1a0n:B (-1.00) BS01 peptide 2.7.10.2 N/A P06241 8961927
    1552 1a0o:A (2.95) BS01 MN ? GO:0000156 ... P0AE67 9437425
    1553 1a0o:C (2.95) BS01 MN ? GO:0000156 ... P0AE67 9437425
    1554 1a0o:E (2.95) BS01 MN ? GO:0000156 ... P0AE67 9437425
    1555 1a0o:G (2.95) BS01 MN ? GO:0000156 ... P0AE67 9437425
    1556 1a0q:H (2.3) BS01 ZN ? N/A P01869 9753552
    1557 1a0q:H (2.3) BS02 HEP ? N/A P01869 9753552 MOAD: Ki=27nM
    1558 1a0q:L (2.3) BS01 ZN ? GO:0002250 ... P01837 9753552
    1559 1a0q:L (2.3) BS02 HEP ? GO:0002250 ... P01837 9753552
    1560 1a0r:B (2.8) BS01 FAR ? GO:0001750 ... P62871 9739091
    1561 1a0s:P (2.4) BS01 CA ? GO:0015288 ... P22340 9437428
    1562 1a0s:Q (2.4) BS01 CA ? GO:0015288 ... P22340 9437428
    1563 1a0s:R (2.4) BS01 CA ? GO:0015288 ... P22340 9437428
    1564 1a0t:P (2.4) BS01 GLC ? GO:0015288 ... P22340 9437428
    1565 1a0t:P (2.4) BS02 FRU ? GO:0015288 ... P22340 9437428
    1566 1a0t:P (2.4) BS03 GLC ? GO:0015288 ... P22340 9437428
    1567 1a0t:P (2.4) BS04 CA ? GO:0015288 ... P22340 9437428
    1568 1a0t:Q (2.4) BS01 GLC ? GO:0015288 ... P22340 9437428
    1569 1a0t:Q (2.4) BS02 FRU ? GO:0015288 ... P22340 9437428
    1570 1a0t:Q (2.4) BS03 GLC ? GO:0015288 ... P22340 9437428
    1571 1a0t:Q (2.4) BS04 CA ? GO:0015288 ... P22340 9437428
    1572 1a0t:R (2.4) BS01 GLC ? GO:0015288 ... P22340 9437428
    1573 1a0t:R (2.4) BS02 FRU ? GO:0015288 ... P22340 9437428
    1574 1a0t:R (2.4) BS03 GLC ? GO:0015288 ... P22340 9437428
    1575 1a0t:R (2.4) BS04 CA ? GO:0015288 ... P22340 9437428
    1576 1a0u:A (2.14) BS01 HEM ? GO:0004601 ... P69905 9521756
    1577 1a0u:B (2.14) BS01 HEM ? GO:0004601 ... P68871 9521756
    1578 1a0u:C (2.14) BS01 HEM ? GO:0004601 ... P69905 9521756
    1579 1a0u:D (2.14) BS01 HEM ? GO:0004601 ... P68871 9521756
    1580 1a0z:A (2.0) BS01 HEM ? GO:0004601 ... P69905 9521756
    1581 1a0z:B (2.0) BS01 HEM ? GO:0004601 ... P68871 9521756
    1582 1a0z:C (2.0) BS01 HEM ? GO:0004601 ... P69905 9521756
    1583 1a0z:D (2.0) BS01 HEM ? GO:0004601 ... P68871 9521756
    1584 1a14:N (2.5) BS01 CA 3.2.1.18 GO:0004308 ... P03472 9642070
    1585 1a16:A (2.3) BS01 PRO 3.4.11.9 GO:0004177 ... P15034 9520390
    1586 1a16:A (2.3) BS02 LEU 3.4.11.9 GO:0004177 ... P15034 9520390
    1587 1a16:A (2.3) BS03 MN 3.4.11.9 GO:0004177 ... P15034 9520390
    1588 1a16:A (2.3) BS04 MN 3.4.11.9 GO:0004177 ... P15034 9520390
    1589 1a1a:A (2.0) BS01 peptide 2.7.10.2 N/A P12931 9174343
    1590 1a1a:B (2.0) BS01 peptide 2.7.10.2 N/A P12931 9174343
    1591 1a1a:B (2.0) BS02 peptide 2.7.10.2 N/A P12931 9174343
    1592 1a1b:A (2.2) BS01 peptide 2.7.10.2 N/A P12931 9174343
    1593 1a1b:B (2.2) BS01 peptide 2.7.10.2 N/A P12931 9174343
    1594 1a1c:A (2.4) BS01 peptide 2.7.10.2 N/A P12931 9174343
    1595 1a1c:B (2.4) BS01 peptide 2.7.10.2 N/A P12931 9174343
    1596 1a1e:A (2.2) BS01 peptide 2.7.10.2 N/A P12931 9174343
    1597 1a1e:B (2.2) BS01 peptide 2.7.10.2 N/A P12931 9174343
    1598 1a1f:A (2.1) BS01 dna ? N/A P08046 9562555
    1599 1a1f:A (2.1) BS02 dna ? N/A P08046 9562555
    1600 1a1f:A (2.1) BS03 ZN ? N/A P08046 9562555

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).