SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    165601 3mkd:A (2.4) BS02 ADP 3.6.4.1 GO:0003774 ... P08799 N/A
    165602 3mke:A (1.75) BS01 MA4 3.5.2.6 GO:0008800 ... P0AD64 21041505
    165603 3mke:A (1.75) BS02 MA4 3.5.2.6 GO:0008800 ... P0AD64 21041505
    165604 3mke:A (1.75) BS03 CB4 3.5.2.6 GO:0008800 ... P0AD64 21041505 BindingDB: Ki=2200nM
    165605 3mke:A (1.75) BS04 CZ6 3.5.2.6 GO:0008800 ... P0AD64 21041505
    165606 3mkf:A (1.33) BS01 CZ7 3.5.2.6 GO:0008800 ... P0AD64 21041505
    165607 3mkf:A (1.33) BS02 MA4 3.5.2.6 GO:0008800 ... P0AD64 21041505
    165608 3mkf:A (1.33) BS03 MA4 3.5.2.6 GO:0008800 ... P0AD64 21041505
    165609 3mkg:A (2.2) BS01 ZN 1.15.1.1 GO:0005507 ... P14831 N/A
    165610 3mkg:B (2.2) BS01 ZN 1.15.1.1 GO:0005507 ... P14831 N/A
    165611 3mkh:A (1.995) BS01 FAD 1.7.3.1 GO:0003995 ... B2AM55 20481475
    165612 3mkh:A (1.995) BS02 FAD 1.7.3.1 GO:0003995 ... B2AM55 20481475
    165613 3mkh:B (1.995) BS01 FAD 1.7.3.1 GO:0003995 ... B2AM55 20481475
    165614 3mkh:B (1.995) BS02 FAD 1.7.3.1 GO:0003995 ... B2AM55 20481475
    165615 3mkh:C (1.995) BS01 FAD 1.7.3.1 GO:0003995 ... B2AM55 20481475
    165616 3mkh:C (1.995) BS02 FAD 1.7.3.1 GO:0003995 ... B2AM55 20481475
    165617 3mkh:D (1.995) BS01 FAD 1.7.3.1 GO:0003995 ... B2AM55 20481475
    165618 3mkh:D (1.995) BS02 FAD 1.7.3.1 GO:0003995 ... B2AM55 20481475
    165619 3mkj:A (1.65) BS01 PZP 4.4.1.11 GO:0000096 ... Q84AR1 20601224
    165620 3mkk:A (1.91) BS01 GLC 3.2.1.- GO:0003824 ... A5ZY13 20581222
    165621 3mkk:A (1.91) BS02 BGC 3.2.1.- GO:0003824 ... A5ZY13 20581222
    165622 3mkk:B (1.91) BS01 BGC 3.2.1.- GO:0003824 ... A5ZY13 20581222
    165623 3mkk:B (1.91) BS02 GLC 3.2.1.- GO:0003824 ... A5ZY13 20581222
    165624 3mkm:A (2.2) BS01 CA 3.2.2.8 GO:0005509 ... C3T3U2 21082835
    165625 3mkm:B (2.2) BS01 CA 3.2.2.8 GO:0005509 ... C3T3U2 21082835
    165626 3mkm:C (2.2) BS01 CA 3.2.2.8 GO:0005509 ... C3T3U2 21082835
    165627 3mkm:D (2.2) BS01 CA 3.2.2.8 GO:0005509 ... C3T3U2 21082835
    165628 3mkn:A (2.0) BS01 CA 3.2.2.8 GO:0005509 ... C3T3U2 21082835
    165629 3mkn:A (2.0) BS02 DNB 3.2.2.8 GO:0005509 ... C3T3U2 21082835 MOAD: Ki=76uM
    165630 3mkn:B (2.0) BS01 CA 3.2.2.8 GO:0005509 ... C3T3U2 21082835
    165631 3mkn:B (2.0) BS02 DNB 3.2.2.8 GO:0005509 ... C3T3U2 21082835 MOAD: Ki=76uM
    165632 3mkn:C (2.0) BS01 CA 3.2.2.8 GO:0005509 ... C3T3U2 21082835
    165633 3mkn:C (2.0) BS02 DNB 3.2.2.8 GO:0005509 ... C3T3U2 21082835 MOAD: Ki=76uM
    165634 3mkn:D (2.0) BS01 CA 3.2.2.8 GO:0005509 ... C3T3U2 21082835
    165635 3mkn:D (2.0) BS02 DNB 3.2.2.8 GO:0005509 ... C3T3U2 21082835 MOAD: Ki=76uM
    165636 3mkp:A (2.81) BS01 SGN ? N/A P14210 N/A
    165637 3mkp:C (2.81) BS01 SGN ? N/A P14210 N/A
    165638 3mkp:C (2.81) BS02 IDS ? N/A P14210 N/A
    165639 3mkp:C (2.81) BS03 IDS ? N/A P14210 N/A
    165640 3mks:D (2.6) BS01 C1C ? N/A P07834 20581844
    165641 3mkv:A (2.4) BS01 ZN ? GO:0016787 ... B2T4I1 20604542
    165642 3mkv:A (2.4) BS02 ZN ? GO:0016787 ... B2T4I1 20604542
    165643 3mkv:B (2.4) BS01 ZN ? GO:0016787 ... B2T4I1 20604542
    165644 3mkv:B (2.4) BS02 ZN ? GO:0016787 ... B2T4I1 20604542
    165645 3mkv:C (2.4) BS01 ZN ? GO:0016787 ... B2T4I1 20604542
    165646 3mkv:C (2.4) BS02 ZN ? GO:0016787 ... B2T4I1 20604542
    165647 3mkv:D (2.4) BS01 ZN ? GO:0016787 ... B2T4I1 20604542
    165648 3mkv:D (2.4) BS02 ZN ? GO:0016787 ... B2T4I1 20604542
    165649 3mkv:E (2.4) BS01 ZN ? GO:0016787 ... B2T4I1 20604542
    165650 3mkv:E (2.4) BS02 ZN ? GO:0016787 ... B2T4I1 20604542
    165651 3mkv:F (2.4) BS01 ZN ? GO:0016787 ... B2T4I1 20604542
    165652 3mkv:F (2.4) BS02 ZN ? GO:0016787 ... B2T4I1 20604542
    165653 3mkv:F (2.4) BS03 CO3 ? GO:0016787 ... B2T4I1 20604542
    165654 3mkv:G (2.4) BS01 ZN ? GO:0016787 ... B2T4I1 20604542
    165655 3mkv:G (2.4) BS02 ZN ? GO:0016787 ... B2T4I1 20604542
    165656 3mkv:G (2.4) BS03 CO3 ? GO:0016787 ... B2T4I1 20604542
    165657 3mkv:H (2.4) BS01 ZN ? GO:0016787 ... B2T4I1 20604542
    165658 3mkv:H (2.4) BS02 ZN ? GO:0016787 ... B2T4I1 20604542
    165659 3mkw:B (2.99) BS01 dna ? GO:0003677 ... P62558 20236989
    165660 3mkw:B (2.99) BS02 dna ? GO:0003677 ... P62558 20236989
    165661 3mky:B (2.86) BS01 dna ? GO:0003677 ... P62558 20236989
    165662 3mky:B (2.86) BS02 dna ? GO:0003677 ... P62558 20236989
    165663 3mkz:A (2.98) BS01 dna ? GO:0003677 ... P62558 20236989
    165664 3mkz:A (2.98) BS02 dna ? GO:0003677 ... P62558 20236989
    165665 3mkz:A (2.98) BS03 CA ? GO:0003677 ... P62558 20236989
    165666 3mkz:N (2.98) BS01 dna ? GO:0003677 ... P62558 20236989
    165667 3mkz:N (2.98) BS02 dna ? GO:0003677 ... P62558 20236989
    165668 3mkz:U (2.98) BS01 dna ? GO:0003677 ... P62558 20236989
    165669 3mkz:U (2.98) BS02 dna ? GO:0003677 ... P62558 20236989
    165670 3ml0:B (3.5) BS01 CA 3.5.1.11 GO:0016787 ... O34142 22442220
    165671 3ml1:A (1.6) BS01 SF4 1.9.6.1 GO:0005506 ... P39185 21419779
    165672 3ml1:A (1.6) BS02 MGD 1.9.6.1 GO:0005506 ... P39185 21419779
    165673 3ml1:A (1.6) BS03 MGD 1.9.6.1 GO:0005506 ... P39185 21419779
    165674 3ml1:A (1.6) BS04 HEC 1.9.6.1 GO:0005506 ... P39185 21419779
    165675 3ml1:B (1.6) BS01 HEC 1.9.6.1 GO:0009061 ... P39186 21419779
    165676 3ml1:B (1.6) BS02 HEC 1.9.6.1 GO:0009061 ... P39186 21419779
    165677 3ml2:A (1.8) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 20598552
    165678 3ml2:A (1.8) BS02 SU0 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 20598552 MOAD: Ki=9.1nM
    BindingDB: Ki=9nM
    165679 3ml4:A (2.6) BS01 peptide ? GO:0019901 ... Q18PE0 20603078
    165680 3ml4:B (2.6) BS01 peptide ? GO:0019901 ... Q18PE0 20603078
    165681 3ml4:B (2.6) BS02 peptide ? GO:0019901 ... Q18PE0 20603078
    165682 3ml4:C (2.6) BS01 peptide ? GO:0019901 ... Q18PE0 20603078
    165683 3ml4:C (2.6) BS02 peptide ? GO:0019901 ... Q18PE0 20603078
    165684 3ml4:D (2.6) BS01 peptide ? GO:0019901 ... Q18PE0 20603078
    165685 3ml4:D (2.6) BS02 peptide ? GO:0019901 ... Q18PE0 20603078
    165686 3ml5:A (2.05) BS01 ZN 4.2.1.1 GO:0004089 ... P43166 20688517
    165687 3ml5:A (2.05) BS02 AZM 4.2.1.1 GO:0004089 ... P43166 20688517 BindingDB: Ki=2.5nM, Kd=17nM, IC50=3440nM
    165688 3ml8:A (2.7) BS01 ML8 2.7.11.1
    2.7.1.137
    2.7.1.153
    2.7.1.154
    GO:0016301 ... P48736 24900568
    165689 3ml9:A (2.55) BS01 ML9 2.7.11.1
    2.7.1.137
    2.7.1.153
    2.7.1.154
    GO:0016301 ... P48736 24900568
    165690 3mla:A (1.75) BS01 JJZ 2.7.7.18 GO:0003824 ... C3L5T6 20578699 BindingDB: Ki=1.0e+4nM, IC50=2.5e+4nM
    165691 3mla:B (1.75) BS01 JJZ 2.7.7.18 GO:0003824 ... C3L5T6 20578699 BindingDB: Ki=1.0e+4nM, IC50=2.5e+4nM
    165692 3mlb:A (1.8) BS01 LJZ 2.7.7.18 GO:0003824 ... C3L5T6 20578699 MOAD: ic50=16uM
    165693 3mlb:B (1.8) BS01 LJZ 2.7.7.18 GO:0003824 ... C3L5T6 20578699
    165694 3mlc:A (2.224) BS01 PR6 4.1.1.- N/A F2Z288 23781927
    165695 3mlc:B (2.224) BS01 PR6 4.1.1.- N/A F2Z288 23781927
    165696 3mlc:C (2.224) BS01 PR6 4.1.1.- N/A F2Z288 23781927
    165697 3mlc:D (2.224) BS01 PR6 4.1.1.- N/A F2Z288 23781927
    165698 3mlc:E (2.224) BS01 PR6 4.1.1.- N/A F2Z288 23781927
    165699 3mle:A (2.8) BS01 MG 6.3.3.3 GO:0000287 ... O24872 22284390
    165700 3mle:A (2.8) BS02 8AC 6.3.3.3 GO:0000287 ... O24872 22284390
    165701 3mle:A (2.8) BS03 ADP 6.3.3.3 GO:0000287 ... O24872 22284390
    165702 3mle:A (2.8) BS04 8AC 6.3.3.3 GO:0000287 ... O24872 22284390
    165703 3mle:B (2.8) BS01 MG 6.3.3.3 GO:0000287 ... O24872 22284390
    165704 3mle:B (2.8) BS02 8AC 6.3.3.3 GO:0000287 ... O24872 22284390
    165705 3mle:B (2.8) BS03 ADP 6.3.3.3 GO:0000287 ... O24872 22284390
    165706 3mle:B (2.8) BS04 8AC 6.3.3.3 GO:0000287 ... O24872 22284390
    165707 3mle:C (2.8) BS01 8AC 6.3.3.3 GO:0000287 ... O24872 22284390
    165708 3mle:C (2.8) BS02 MG 6.3.3.3 GO:0000287 ... O24872 22284390
    165709 3mle:C (2.8) BS03 8AC 6.3.3.3 GO:0000287 ... O24872 22284390
    165710 3mle:C (2.8) BS04 ADP 6.3.3.3 GO:0000287 ... O24872 22284390
    165711 3mle:D (2.8) BS01 8AC 6.3.3.3 GO:0000287 ... O24872 22284390
    165712 3mle:D (2.8) BS02 MG 6.3.3.3 GO:0000287 ... O24872 22284390
    165713 3mle:D (2.8) BS03 8AC 6.3.3.3 GO:0000287 ... O24872 22284390
    165714 3mle:D (2.8) BS04 ADP 6.3.3.3 GO:0000287 ... O24872 22284390
    165715 3mle:E (2.8) BS01 MG 6.3.3.3 GO:0000287 ... O24872 22284390
    165716 3mle:E (2.8) BS02 ADP 6.3.3.3 GO:0000287 ... O24872 22284390
    165717 3mle:E (2.8) BS03 8AC 6.3.3.3 GO:0000287 ... O24872 22284390
    165718 3mle:F (2.8) BS01 8AC 6.3.3.3 GO:0000287 ... O24872 22284390
    165719 3mle:F (2.8) BS02 MG 6.3.3.3 GO:0000287 ... O24872 22284390
    165720 3mle:F (2.8) BS03 8AC 6.3.3.3 GO:0000287 ... O24872 22284390
    165721 3mle:F (2.8) BS04 ADP 6.3.3.3 GO:0000287 ... O24872 22284390
    165722 3mli:D (2.9) BS01 CA ? N/A O25025 21068371
    165723 3mlj:A (2.15) BS01 CU 1.14.17.3
    4.3.2.5
    GO:0003824 ... P14925 20958070
    165724 3mlj:A (2.15) BS02 CU 1.14.17.3
    4.3.2.5
    GO:0003824 ... P14925 20958070
    165725 3mlj:A (2.15) BS03 CMO 1.14.17.3
    4.3.2.5
    GO:0003824 ... P14925 20958070
    165726 3mlk:A (3.1) BS01 CU 1.14.17.3
    4.3.2.5
    GO:0003824 ... P14925 20958070
    165727 3mlk:A (3.1) BS02 NO2 1.14.17.3
    4.3.2.5
    GO:0003824 ... P14925 20958070
    165728 3mlk:A (3.1) BS03 NO2 1.14.17.3
    4.3.2.5
    GO:0003824 ... P14925 20958070
    165729 3mll:A (3.25) BS01 CU 1.14.17.3
    4.3.2.5
    GO:0003824 ... P14925 20958070
    165730 3mlm:A (2.21) BS01 MYR 3.1.1.4 GO:0004623 ... Q9IAT9 21108987
    165731 3mlm:B (2.21) BS01 MYR 3.1.1.4 GO:0004623 ... Q9IAT9 21108987
    165732 3mln:A (2.4) BS01 dna ? GO:0003677 ... Q07802 20876732
    165733 3mln:A (2.4) BS02 dna ? GO:0003677 ... Q07802 20876732
    165734 3mln:A (2.4) BS03 ZN ? GO:0003677 ... Q07802 20876732
    165735 3mln:B (2.4) BS01 dna ? GO:0003677 ... Q07802 20876732
    165736 3mln:B (2.4) BS02 dna ? GO:0003677 ... Q07802 20876732
    165737 3mln:B (2.4) BS03 ZN ? GO:0003677 ... Q07802 20876732
    165738 3mlo:A (3.01) BS01 dna ? GO:0003677 ... Q07802 20876732
    165739 3mlo:A (3.01) BS02 dna ? GO:0003677 ... Q07802 20876732
    165740 3mlo:A (3.01) BS03 ZN ? GO:0003677 ... Q07802 20876732
    165741 3mlo:B (3.01) BS01 dna ? GO:0003677 ... Q07802 20876732
    165742 3mlo:B (3.01) BS02 dna ? GO:0003677 ... Q07802 20876732
    165743 3mlo:B (3.01) BS03 ZN ? GO:0003677 ... Q07802 20876732
    165744 3mlp:A (2.8) BS01 dna ? GO:0003677 ... Q07802 20876732
    165745 3mlp:A (2.8) BS02 dna ? GO:0003677 ... Q07802 20876732
    165746 3mlp:A (2.8) BS03 ZN ? GO:0003677 ... Q07802 20876732
    165747 3mlp:B (2.8) BS01 dna ? GO:0003677 ... Q07802 20876732
    165748 3mlp:B (2.8) BS02 dna ? GO:0003677 ... Q07802 20876732
    165749 3mlp:B (2.8) BS03 ZN ? GO:0003677 ... Q07802 20876732
    165750 3mlp:E (2.8) BS01 dna ? GO:0003677 ... Q07802 20876732
    165751 3mlp:E (2.8) BS02 dna ? GO:0003677 ... Q07802 20876732
    165752 3mlp:E (2.8) BS03 ZN ? GO:0003677 ... Q07802 20876732
    165753 3mlp:F (2.8) BS01 dna ? GO:0003677 ... Q07802 20876732
    165754 3mlp:F (2.8) BS02 dna ? GO:0003677 ... Q07802 20876732
    165755 3mlp:F (2.8) BS03 ZN ? GO:0003677 ... Q07802 20876732
    165756 3mlr:H (1.8) BS01 peptide N/A N/A N/A 20622876
    165757 3mlr:L (1.8) BS01 peptide N/A N/A N/A 20622876
    165758 3mls:H (2.5) BS01 peptide N/A N/A N/A 20622876
    165759 3mls:H (2.5) BS02 peptide N/A N/A N/A 20622876
    165760 3mls:I (2.5) BS01 peptide N/A N/A N/A 20622876
    165761 3mls:J (2.5) BS01 peptide N/A N/A N/A 20622876
    165762 3mls:K (2.5) BS01 peptide N/A N/A N/A 20622876
    165763 3mls:L (2.5) BS01 peptide N/A N/A N/A 20622876
    165764 3mls:M (2.5) BS01 peptide N/A N/A N/A 20622876
    165765 3mls:N (2.5) BS01 peptide N/A N/A N/A 20622876
    165766 3mls:O (2.5) BS01 peptide N/A N/A N/A 20622876
    165767 3mlt:A (2.49) BS01 peptide N/A N/A N/A 20622876
    165768 3mlt:B (2.49) BS01 peptide N/A N/A N/A 20622876
    165769 3mlt:H (2.49) BS01 peptide N/A N/A N/A 20622876
    165770 3mlt:L (2.49) BS01 peptide N/A N/A N/A 20622876
    165771 3mlu:H (2.77) BS01 peptide N/A N/A N/A 20622876
    165772 3mlu:L (2.77) BS01 peptide N/A N/A N/A 20622876
    165773 3mlv:H (2.48) BS01 peptide N/A N/A N/A 20622876
    165774 3mlv:L (2.48) BS01 peptide N/A N/A N/A 20622876
    165775 3mlv:M (2.48) BS01 peptide N/A N/A N/A 20622876
    165776 3mlv:N (2.48) BS01 peptide N/A N/A N/A 20622876
    165777 3mlw:H (2.7) BS01 peptide N/A N/A N/A 20622876
    165778 3mlw:I (2.7) BS01 peptide N/A N/A N/A 20622876
    165779 3mlw:L (2.7) BS01 peptide N/A N/A N/A 20622876
    165780 3mlw:M (2.7) BS01 peptide N/A N/A N/A 20622876
    165781 3mlx:H (1.9) BS01 peptide N/A N/A N/A 20622876
    165782 3mlx:I (1.9) BS01 peptide N/A N/A N/A 20622876
    165783 3mly:H (1.7) BS01 peptide N/A N/A N/A 20622876
    165784 3mly:I (1.7) BS01 peptide N/A N/A N/A 20622876
    165785 3mly:L (1.7) BS01 peptide N/A N/A N/A 20622876
    165786 3mlz:H (2.99) BS01 peptide N/A N/A N/A 20622876
    165787 3mm1:A (1.42) BS01 HEM 1.11.1.19 GO:0004601 ... Q8WZK8 21569205
    165788 3mm2:A (1.45) BS01 HEM 1.11.1.19 GO:0004601 ... Q8WZK8 21569205
    165789 3mm2:A (1.45) BS02 CYN 1.11.1.19 GO:0004601 ... Q8WZK8 21569205
    165790 3mm3:A (1.4) BS01 HEM 1.11.1.19 GO:0004601 ... Q8WZK8 21569205
    165791 3mm3:A (1.4) BS02 CYN 1.11.1.19 GO:0004601 ... Q8WZK8 21569205
    165792 3mm5:A (1.8) BS01 SRM 1.8.1.22 GO:0000103 ... Q59109 20822098
    165793 3mm5:A (1.8) BS02 SF4 1.8.1.22 GO:0000103 ... Q59109 20822098
    165794 3mm5:A (1.8) BS03 SF4 1.8.1.22 GO:0000103 ... Q59109 20822098
    165795 3mm5:A (1.8) BS04 SO3 1.8.1.22 GO:0000103 ... Q59109 20822098
    165796 3mm5:A (1.8) BS05 SRM 1.8.1.22 GO:0000103 ... Q59109 20822098
    165797 3mm5:B (1.8) BS01 SRM 1.8.1.22 GO:0000103 ... Q59110 20822098
    165798 3mm5:B (1.8) BS02 SF4 1.8.1.22 GO:0000103 ... Q59110 20822098
    165799 3mm5:B (1.8) BS03 SF4 1.8.1.22 GO:0000103 ... Q59110 20822098
    165800 3mm5:B (1.8) BS04 SRM 1.8.1.22 GO:0000103 ... Q59110 20822098

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).