SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    174001 3p2r:A (2.46) BS05 FAH 3.1.2.29 GO:0016289 ... Q1EMV2 20836570
    174002 3p2r:B (2.46) BS01 FAH 3.1.2.29 GO:0016289 ... Q1EMV2 20836570
    174003 3p2r:B (2.46) BS02 FAH 3.1.2.29 GO:0016289 ... Q1EMV2 20836570
    174004 3p2r:B (2.46) BS03 FAH 3.1.2.29 GO:0016289 ... Q1EMV2 20836570
    174005 3p2r:B (2.46) BS04 FAH 3.1.2.29 GO:0016289 ... Q1EMV2 20836570
    174006 3p2r:B (2.46) BS05 FAH 3.1.2.29 GO:0016289 ... Q1EMV2 20836570
    174007 3p2u:A (1.48) BS01 MN 3.1.4.55 GO:0008081 ... P16692 N/A
    174008 3p2u:A (1.48) BS02 MN 3.1.4.55 GO:0008081 ... P16692 N/A
    174009 3p2u:A (1.48) BS03 ZN 3.1.4.55 GO:0008081 ... P16692 N/A
    174010 3p2u:B (1.48) BS01 MN 3.1.4.55 GO:0008081 ... P16692 N/A
    174011 3p2u:B (1.48) BS02 MN 3.1.4.55 GO:0008081 ... P16692 N/A
    174012 3p2u:B (1.48) BS03 ZN 3.1.4.55 GO:0008081 ... P16692 N/A
    174013 3p2v:A (1.69) BS01 NAP 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54
    GO:0001523 ... P15121 21684320
    174014 3p2v:A (1.69) BS02 DOY 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54
    GO:0001523 ... P15121 21684320 MOAD: Kd=1.29uM
    174015 3p2v:A (1.69) BS03 DOY 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54
    GO:0001523 ... P15121 21684320 MOAD: Kd=1.29uM
    174016 3p2x:B (2.0) BS01 peptide ? GO:0005179 ... P01308 N/A
    174017 3p2x:D (2.0) BS01 peptide ? GO:0005179 ... P01308 N/A
    174018 3p2y:A (1.82) BS01 CA 7.1.1.1 GO:0005886 ... A0QNT0 25613812
    174019 3p2z:A (1.79) BS01 peptide 2.7.11.21 N/A P53350 21472932
    174020 3p32:A (1.9) BS01 GDP 3.6.-.- GO:0003924 ... P9WPZ1 25832174
    174021 3p33:B (2.3) BS01 peptide ? GO:0005179 ... P01308 N/A
    174022 3p33:D (2.3) BS01 peptide ? GO:0005179 ... P01308 N/A
    174023 3p33:F (2.3) BS01 peptide ? GO:0005179 ... P01308 N/A
    174024 3p33:H (2.3) BS01 peptide ? GO:0005179 ... P01308 N/A
    174025 3p34:A (1.4) BS01 peptide 2.7.11.21 N/A P53350 21472932
    174026 3p35:A (2.09) BS01 peptide 2.7.11.21 N/A P53350 21472932
    174027 3p35:A (2.09) BS02 peptide 2.7.11.21 N/A P53350 21472932
    174028 3p35:B (2.09) BS01 peptide 2.7.11.21 N/A P53350 21472932
    174029 3p36:A (1.59) BS01 peptide 2.7.11.21 N/A P53350 21472932
    174030 3p37:A (2.38) BS01 peptide 2.7.11.21 N/A P53350 21472932
    174031 3p37:B (2.38) BS01 peptide 2.7.11.21 N/A P53350 21472932
    174032 3p37:C (2.38) BS01 peptide 2.7.11.21 N/A P53350 21472932
    174033 3p3b:A (1.651) BS01 MG ? N/A A0ACD6B8H0 N/A
    174034 3p3b:A (1.651) BS02 MG ? N/A A0ACD6B8H0 N/A
    174035 3p3b:B (1.651) BS01 MG ? N/A A0ACD6B8H0 N/A
    174036 3p3b:B (1.651) BS02 MG ? N/A A0ACD6B8H0 N/A
    174037 3p3c:A (1.25) BS01 ZN 3.5.1.108 GO:0005737 ... O67648 21167751
    174038 3p3c:A (1.25) BS02 3P3 3.5.1.108 GO:0005737 ... O67648 21167751 BindingDB: Kd=8nM, Ki=1nM
    174039 3p3e:A (1.28) BS01 ZN 3.5.1.108 GO:0005737 ... P47205 21167751
    174040 3p3e:A (1.28) BS02 ZN 3.5.1.108 GO:0005737 ... P47205 21167751
    174041 3p3e:A (1.28) BS03 3P3 3.5.1.108 GO:0005737 ... P47205 21167751 BindingDB: Kd=8.35nM
    174042 3p3g:A (1.65) BS01 ZN N/A GO:0009245 ... N/A 21167751
    174043 3p3g:A (1.65) BS02 3P3 N/A GO:0009245 ... N/A 21167751 MOAD: Ki=0.18nM
    174044 3p3g:A (1.65) BS03 UKW N/A GO:0009245 ... N/A 21167751
    174045 3p3h:A (1.5) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 22258283
    174046 3p3h:A (1.5) BS02 84A 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 22258283
    174047 3p3i:A (2.0) BS01 FAH 3.1.2.29 GO:0016289 ... Q1EMV2 20836570
    174048 3p3i:B (2.0) BS01 COA 3.1.2.29 GO:0016289 ... Q1EMV2 20836570
    174049 3p3i:C (2.0) BS01 FAH 3.1.2.29 GO:0016289 ... Q1EMV2 20836570
    174050 3p3i:D (2.0) BS01 COA 3.1.2.29 GO:0016289 ... Q1EMV2 20836570
    174051 3p3j:A (1.6) BS01 498 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 22258283
    174052 3p3j:A (1.6) BS02 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 22258283
    174053 3p3l:A (2.1) BS01 HEM ? GO:0004497 ... Q70KH6 21280577
    174054 3p3l:B (2.1) BS01 HEM ? GO:0004497 ... Q70KH6 21280577
    174055 3p3n:A (2.4) BS01 peptide 1.14.11.30
    1.14.11.n4
    GO:0000122 ... Q9NWT6 17573339
    174056 3p3n:A (2.4) BS02 FE2 1.14.11.30
    1.14.11.n4
    GO:0000122 ... Q9NWT6 17573339
    174057 3p3n:A (2.4) BS03 AKG 1.14.11.30
    1.14.11.n4
    GO:0000122 ... Q9NWT6 17573339
    174058 3p3o:A (1.54) BS01 HEM ? GO:0004497 ... Q70KH6 21280577
    174059 3p3p:A (2.6) BS01 peptide 1.14.11.30
    1.14.11.n4
    GO:0000122 ... Q9NWT6 17573339
    174060 3p3p:A (2.6) BS02 FE2 1.14.11.30
    1.14.11.n4
    GO:0000122 ... Q9NWT6 17573339
    174061 3p3p:A (2.6) BS03 AKG 1.14.11.30
    1.14.11.n4
    GO:0000122 ... Q9NWT6 17573339
    174062 3p3r:A (1.25) BS01 3M1 ? GO:0001523 ... P02766 21865539 BindingDB: IC50=755nM, Kd=184nM
    174063 3p3r:B (1.25) BS01 3M1 ? GO:0001523 ... P02766 21865539 BindingDB: IC50=755nM, Kd=184nM
    174064 3p3s:A (1.6) BS01 3M2 ? GO:0001523 ... P02766 21865539
    174065 3p3s:A (1.6) BS02 3M2 ? GO:0001523 ... P02766 21865539
    174066 3p3s:B (1.6) BS01 3M2 ? GO:0001523 ... P02766 21865539
    174067 3p3s:B (1.6) BS02 3M2 ? GO:0001523 ... P02766 21865539
    174068 3p3t:A (1.45) BS01 3M3 ? GO:0001523 ... P02766 21865539 BindingDB: IC50=296nM, Kd=320nM
    174069 3p3t:B (1.45) BS01 3M3 ? GO:0001523 ... P02766 21865539 BindingDB: IC50=296nM, Kd=320nM
    174070 3p3u:A (1.5) BS01 3M4 ? GO:0001523 ... P02766 21865539 BindingDB: IC50=329nM
    174071 3p3u:B (1.5) BS01 3M4 ? GO:0001523 ... P02766 21865539 BindingDB: IC50=329nM
    174072 3p3x:A (2.3) BS01 HEM ? GO:0004497 ... Q70KH6 21280577
    174073 3p3x:B (2.3) BS01 HEM ? GO:0004497 ... Q70KH6 21280577
    174074 3p3z:A (2.3) BS01 HEM ? GO:0004497 ... Q70KH6 21280577
    174075 3p3z:A (2.3) BS02 P3Z ? GO:0004497 ... Q70KH6 21280577
    174076 3p41:A (1.76) BS01 MG 2.5.1.10 GO:0004337 ... Q4K5A6 23493556
    174077 3p41:A (1.76) BS02 MG 2.5.1.10 GO:0004337 ... Q4K5A6 23493556
    174078 3p41:A (1.76) BS03 DMA 2.5.1.10 GO:0004337 ... Q4K5A6 23493556
    174079 3p41:A (1.76) BS04 DMA 2.5.1.10 GO:0004337 ... Q4K5A6 23493556
    174080 3p41:A (1.76) BS05 POP 2.5.1.10 GO:0004337 ... Q4K5A6 23493556
    174081 3p43:A (2.1) BS01 MN ? N/A Q46AP6 21208981
    174082 3p44:A (2.2) BS01 067 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 22258283
    174083 3p44:A (2.2) BS02 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 22258283
    174084 3p47:A (1.78) BS01 CYS 2.3.1.30 GO:0009001 ... Q9U8X2 21297164
    174085 3p48:A (1.67) BS01 DUP 3.6.1.23 GO:0000287 ... P33317 21548881
    174086 3p48:A (1.67) BS02 DUP 3.6.1.23 GO:0000287 ... P33317 21548881
    174087 3p48:B (1.67) BS01 DUP 3.6.1.23 GO:0000287 ... P33317 21548881
    174088 3p48:B (1.67) BS02 DUP 3.6.1.23 GO:0000287 ... P33317 21548881
    174089 3p48:C (1.67) BS01 DUP 3.6.1.23 GO:0000287 ... P33317 21548881
    174090 3p48:C (1.67) BS02 DUP 3.6.1.23 GO:0000287 ... P33317 21548881
    174091 3p49:B (3.55) BS01 rna ? GO:0003676 ... P09012 21439473
    174092 3p4e:A (1.77) BS01 AMP 6.3.3.1 GO:0004637 ... Q9KPY6 N/A
    174093 3p4f:A (2.35) BS01 peptide ? GO:0000122 ... P61964 21220120
    174094 3p4f:A (2.35) BS02 peptide ? GO:0000122 ... P61964 21220120
    174095 3p4g:A (1.7) BS01 CA ? N/A A1YIY3 21482800
    174096 3p4g:A (1.7) BS02 CA ? N/A A1YIY3 21482800
    174097 3p4g:A (1.7) BS03 CA ? N/A A1YIY3 21482800
    174098 3p4g:A (1.7) BS04 CA ? N/A A1YIY3 21482800
    174099 3p4g:A (1.7) BS05 CA ? N/A A1YIY3 21482800
    174100 3p4g:A (1.7) BS06 CA ? N/A A1YIY3 21482800
    174101 3p4g:A (1.7) BS07 CA ? N/A A1YIY3 21482800
    174102 3p4g:A (1.7) BS08 CA ? N/A A1YIY3 21482800
    174103 3p4g:A (1.7) BS09 CA ? N/A A1YIY3 21482800
    174104 3p4g:A (1.7) BS10 CA ? N/A A1YIY3 21482800
    174105 3p4g:A (1.7) BS11 CA ? N/A A1YIY3 21482800
    174106 3p4g:A (1.7) BS12 CA ? N/A A1YIY3 21482800
    174107 3p4g:A (1.7) BS13 CA ? N/A A1YIY3 21482800
    174108 3p4g:B (1.7) BS01 CA ? N/A A1YIY3 21482800
    174109 3p4g:B (1.7) BS02 CA ? N/A A1YIY3 21482800
    174110 3p4g:B (1.7) BS03 CA ? N/A A1YIY3 21482800
    174111 3p4g:B (1.7) BS04 CA ? N/A A1YIY3 21482800
    174112 3p4g:B (1.7) BS05 CA ? N/A A1YIY3 21482800
    174113 3p4g:B (1.7) BS06 CA ? N/A A1YIY3 21482800
    174114 3p4g:B (1.7) BS07 CA ? N/A A1YIY3 21482800
    174115 3p4g:B (1.7) BS08 CA ? N/A A1YIY3 21482800
    174116 3p4g:B (1.7) BS09 CA ? N/A A1YIY3 21482800
    174117 3p4g:B (1.7) BS10 CA ? N/A A1YIY3 21482800
    174118 3p4g:B (1.7) BS11 CA ? N/A A1YIY3 21482800
    174119 3p4g:B (1.7) BS12 CA ? N/A A1YIY3 21482800
    174120 3p4g:B (1.7) BS13 CA ? N/A A1YIY3 21482800
    174121 3p4g:C (1.7) BS01 CA ? N/A A1YIY3 21482800
    174122 3p4g:C (1.7) BS02 CA ? N/A A1YIY3 21482800
    174123 3p4g:C (1.7) BS03 CA ? N/A A1YIY3 21482800
    174124 3p4g:C (1.7) BS04 CA ? N/A A1YIY3 21482800
    174125 3p4g:C (1.7) BS05 CA ? N/A A1YIY3 21482800
    174126 3p4g:C (1.7) BS06 CA ? N/A A1YIY3 21482800
    174127 3p4g:C (1.7) BS07 CA ? N/A A1YIY3 21482800
    174128 3p4g:C (1.7) BS08 CA ? N/A A1YIY3 21482800
    174129 3p4g:C (1.7) BS09 CA ? N/A A1YIY3 21482800
    174130 3p4g:C (1.7) BS10 CA ? N/A A1YIY3 21482800
    174131 3p4g:C (1.7) BS11 CA ? N/A A1YIY3 21482800
    174132 3p4g:C (1.7) BS12 CA ? N/A A1YIY3 21482800
    174133 3p4g:C (1.7) BS13 CA ? N/A A1YIY3 21482800
    174134 3p4g:D (1.7) BS01 CA ? N/A A1YIY3 21482800
    174135 3p4g:D (1.7) BS02 CA ? N/A A1YIY3 21482800
    174136 3p4g:D (1.7) BS03 CA ? N/A A1YIY3 21482800
    174137 3p4g:D (1.7) BS04 CA ? N/A A1YIY3 21482800
    174138 3p4g:D (1.7) BS05 CA ? N/A A1YIY3 21482800
    174139 3p4g:D (1.7) BS06 CA ? N/A A1YIY3 21482800
    174140 3p4g:D (1.7) BS07 CA ? N/A A1YIY3 21482800
    174141 3p4g:D (1.7) BS08 CA ? N/A A1YIY3 21482800
    174142 3p4g:D (1.7) BS09 CA ? N/A A1YIY3 21482800
    174143 3p4g:D (1.7) BS10 CA ? N/A A1YIY3 21482800
    174144 3p4g:D (1.7) BS11 CA ? N/A A1YIY3 21482800
    174145 3p4g:D (1.7) BS12 CA ? N/A A1YIY3 21482800
    174146 3p4g:D (1.7) BS13 CA ? N/A A1YIY3 21482800
    174147 3p4h:A (1.1) BS01 MN ? N/A B1L4V6 21208981
    174148 3p4h:A (1.1) BS02 PO4 ? N/A B1L4V6 21208981
    174149 3p4k:A (2.304) BS01 peptide 2.7.11.24 GO:0000077 ... P47811 21134636
    174150 3p4m:A (2.5) BS01 peptide ? N/A P01901 N/A
    174151 3p4m:D (2.5) BS01 peptide ? N/A P01901 N/A
    174152 3p4n:A (2.5) BS01 peptide ? N/A P01901 N/A
    174153 3p4n:D (2.5) BS01 peptide ? N/A P01901 N/A
    174154 3p4o:A (2.3) BS01 peptide ? N/A P01901 N/A
    174155 3p4o:D (2.3) BS01 peptide ? N/A P01901 N/A
    174156 3p4p:A (2.8) BS01 FAD 1.3.5.1 GO:0000104 ... P00363 21098488
    174157 3p4p:A (2.8) BS02 FUM 1.3.5.1 GO:0000104 ... P00363 21098488
    174158 3p4p:B (2.8) BS01 FES 1.3.5.1 GO:0005515 ... P0AC47 21098488
    174159 3p4p:B (2.8) BS02 F3S 1.3.5.1 GO:0005515 ... P0AC47 21098488
    174160 3p4p:B (2.8) BS03 SF4 1.3.5.1 GO:0005515 ... P0AC47 21098488
    174161 3p4p:M (2.8) BS01 FAD 1.3.5.1 GO:0000104 ... P00363 21098488
    174162 3p4p:N (2.8) BS01 FES 1.3.5.1 GO:0005515 ... P0AC47 21098488
    174163 3p4p:N (2.8) BS02 F3S 1.3.5.1 GO:0005515 ... P0AC47 21098488
    174164 3p4p:N (2.8) BS03 SF4 1.3.5.1 GO:0005515 ... P0AC47 21098488
    174165 3p4q:A (3.35) BS01 FAD 1.3.5.1 GO:0000104 ... P00363 21098488
    174166 3p4q:A (3.35) BS02 OAA 1.3.5.1 GO:0000104 ... P00363 21098488
    174167 3p4q:B (3.35) BS01 FES 1.3.5.1 GO:0005515 ... P0AC47 21098488
    174168 3p4q:B (3.35) BS02 F3S 1.3.5.1 GO:0005515 ... P0AC47 21098488
    174169 3p4q:B (3.35) BS03 SF4 1.3.5.1 GO:0005515 ... P0AC47 21098488
    174170 3p4q:M (3.35) BS01 FAD 1.3.5.1 GO:0000104 ... P00363 21098488
    174171 3p4q:M (3.35) BS02 OAA 1.3.5.1 GO:0000104 ... P00363 21098488
    174172 3p4q:N (3.35) BS01 SF4 1.3.5.1 GO:0005515 ... P0AC47 21098488
    174173 3p4q:N (3.35) BS02 FES 1.3.5.1 GO:0005515 ... P0AC47 21098488
    174174 3p4q:N (3.35) BS03 F3S 1.3.5.1 GO:0005515 ... P0AC47 21098488
    174175 3p4r:A (3.05) BS01 FAD 1.3.5.1 GO:0000104 ... P00363 21098488
    174176 3p4r:A (3.05) BS02 GUA 1.3.5.1 GO:0000104 ... P00363 21098488
    174177 3p4r:B (3.05) BS01 FES 1.3.5.1 GO:0005515 ... P0AC47 21098488
    174178 3p4r:B (3.05) BS02 F3S 1.3.5.1 GO:0005515 ... P0AC47 21098488
    174179 3p4r:B (3.05) BS03 SF4 1.3.5.1 GO:0005515 ... P0AC47 21098488
    174180 3p4r:M (3.05) BS01 GUA 1.3.5.1 GO:0000104 ... P00363 21098488
    174181 3p4r:M (3.05) BS02 FAD 1.3.5.1 GO:0000104 ... P00363 21098488
    174182 3p4r:N (3.05) BS01 FES 1.3.5.1 GO:0005515 ... P0AC47 21098488
    174183 3p4r:N (3.05) BS02 F3S 1.3.5.1 GO:0005515 ... P0AC47 21098488
    174184 3p4r:N (3.05) BS03 SF4 1.3.5.1 GO:0005515 ... P0AC47 21098488
    174185 3p4s:A (3.1) BS01 FAD 1.3.5.1 GO:0000104 ... P00363 21098488
    174186 3p4s:A (3.1) BS02 3NP 1.3.5.1 GO:0000104 ... P00363 21098488
    174187 3p4s:B (3.1) BS01 FES 1.3.5.1 GO:0005515 ... P0AC47 21098488
    174188 3p4s:B (3.1) BS02 F3S 1.3.5.1 GO:0005515 ... P0AC47 21098488
    174189 3p4s:B (3.1) BS03 SF4 1.3.5.1 GO:0005515 ... P0AC47 21098488
    174190 3p4s:M (3.1) BS01 FAD 1.3.5.1 GO:0000104 ... P00363 21098488
    174191 3p4s:N (3.1) BS01 FES 1.3.5.1 GO:0005515 ... P0AC47 21098488
    174192 3p4s:N (3.1) BS02 F3S 1.3.5.1 GO:0005515 ... P0AC47 21098488
    174193 3p4s:N (3.1) BS03 SF4 1.3.5.1 GO:0005515 ... P0AC47 21098488
    174194 3p4t:A (1.7) BS01 FAO 1.1.1.35 GO:0003995 ... A0R3J1 25613812
    174195 3p4t:A (1.7) BS02 FAO 1.1.1.35 GO:0003995 ... A0R3J1 25613812
    174196 3p4t:B (1.7) BS01 FAO 1.1.1.35 GO:0003995 ... A0R3J1 25613812
    174197 3p4t:B (1.7) BS02 FAO 1.1.1.35 GO:0003995 ... A0R3J1 25613812
    174198 3p4u:A (1.9) BS01 peptide 3.4.22.59 GO:0004197 ... P55212 N/A
    174199 3p4u:B (1.9) BS01 peptide 3.4.22.59 GO:0004197 ... P55212 N/A
    174200 3p4u:C (1.9) BS01 peptide 3.4.22.59 GO:0004197 ... P55212 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).