SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    175201 3pdt:A (1.8) BS02 MG 2.7.11.7 GO:0004674 ... P42527 21071445
    175202 3pdt:A (1.8) BS03 ZN 2.7.11.7 GO:0004674 ... P42527 21071445
    175203 3pdt:A (1.8) BS04 ADP 2.7.11.7 GO:0004674 ... P42527 21071445
    175204 3pdu:A (1.89) BS01 NAP ? GO:0016054 ... Q74DE4 24878278
    175205 3pdu:A (1.89) BS02 GOL ? GO:0016054 ... Q74DE4 24878278
    175206 3pdu:A (1.89) BS03 GOL ? GO:0016054 ... Q74DE4 24878278
    175207 3pdu:B (1.89) BS01 GOL ? GO:0016054 ... Q74DE4 24878278
    175208 3pdu:B (1.89) BS02 GOL ? GO:0016054 ... Q74DE4 24878278
    175209 3pdu:B (1.89) BS03 NAP ? GO:0016054 ... Q74DE4 24878278
    175210 3pdu:C (1.89) BS01 NAP ? GO:0016054 ... Q74DE4 24878278
    175211 3pdu:C (1.89) BS02 GOL ? GO:0016054 ... Q74DE4 24878278
    175212 3pdu:D (1.89) BS01 GOL ? GO:0016054 ... Q74DE4 24878278
    175213 3pdu:D (1.89) BS02 GOL ? GO:0016054 ... Q74DE4 24878278
    175214 3pdu:D (1.89) BS03 NAP ? GO:0016054 ... Q74DE4 24878278
    175215 3pdu:D (1.89) BS04 GOL ? GO:0016054 ... Q74DE4 24878278
    175216 3pdu:E (1.89) BS01 NAP ? GO:0016054 ... Q74DE4 24878278
    175217 3pdu:E (1.89) BS02 GOL ? GO:0016054 ... Q74DE4 24878278
    175218 3pdu:F (1.89) BS01 GOL ? GO:0016054 ... Q74DE4 24878278
    175219 3pdu:F (1.89) BS02 NAP ? GO:0016054 ... Q74DE4 24878278
    175220 3pdu:F (1.89) BS03 GOL ? GO:0016054 ... Q74DE4 24878278
    175221 3pdu:G (1.89) BS01 NAP ? GO:0016054 ... Q74DE4 24878278
    175222 3pdu:G (1.89) BS02 GOL ? GO:0016054 ... Q74DE4 24878278
    175223 3pdu:H (1.89) BS01 NAP ? GO:0016054 ... Q74DE4 24878278
    175224 3pe0:A (2.95) BS01 CA ? GO:0045104 ... Q15149 21288893
    175225 3pe0:B (2.95) BS01 CA ? GO:0045104 ... Q15149 21288893
    175226 3pe1:A (1.6) BS01 3NG 2.7.11.1 GO:0004672 ... P68400 21870818 MOAD: Ki=0.223nM
    BindingDB: IC50=2000nM, Kd=0.562341nM, Ki=0.380000nM
    175227 3pe2:A (1.9) BS01 E1B 2.7.11.1 GO:0004672 ... P68400 21870818 MOAD: Ki=0.175nM
    BindingDB: IC50=6nM, Ki=420nM
    175228 3pe3:A (2.78) BS01 UDP 2.4.1.255 GO:0006493 ... O15294 21240259 BindingDB: IC50=1800nM
    175229 3pe3:B (2.78) BS01 UDP 2.4.1.255 GO:0006493 ... O15294 21240259 BindingDB: IC50=1800nM
    175230 3pe3:C (2.78) BS01 UDP 2.4.1.255 GO:0006493 ... O15294 21240259 BindingDB: IC50=1800nM
    175231 3pe3:D (2.78) BS01 UDP 2.4.1.255 GO:0006493 ... O15294 21240259 BindingDB: IC50=1800nM
    175232 3pe4:A (1.95) BS01 peptide 2.4.1.255 GO:0006493 ... O15294 21240259
    175233 3pe4:A (1.95) BS02 UDP 2.4.1.255 GO:0006493 ... O15294 21240259 BindingDB: IC50=1800nM
    175234 3pe4:C (1.95) BS01 peptide 2.4.1.255 GO:0006493 ... O15294 21240259
    175235 3pe4:C (1.95) BS02 UDP 2.4.1.255 GO:0006493 ... O15294 21240259 BindingDB: IC50=1800nM
    175236 3pe6:A (1.35) BS01 ZYH 3.1.1.23 GO:0004622 ... Q99685 21308848 BindingDB: IC50=10.0nM
    175237 3pe7:A (1.65) BS01 MN ? GO:0045490 ... A1JMA5 20851883
    175238 3pe7:A (1.65) BS02 CA ? GO:0045490 ... A1JMA5 20851883
    175239 3pe7:A (1.65) BS03 CA ? GO:0045490 ... A1JMA5 20851883
    175240 3pe7:A (1.65) BS04 ACT ? GO:0045490 ... A1JMA5 20851883
    175241 3pe8:A (1.6) BS01 ZN 4.2.1.17 GO:0003824 ... A0QVP0 25613812
    175242 3pec:C (2.19) BS01 ZYG ? GO:0002020 ... P80188 N/A
    175243 3ped:A (2.3) BS01 ZYF ? GO:0002020 ... P80188 N/A
    175244 3ped:B (2.3) BS01 ZYF ? GO:0002020 ... P80188 N/A
    175245 3ped:C (2.3) BS01 ZYF ? GO:0002020 ... P80188 N/A
    175246 3pee:A (2.1) BS01 IHP 2.4.1.- N/A Q189K3 21317893
    175247 3pee:B (2.1) BS01 IHP 2.4.1.- N/A Q189K3 21317893
    175248 3pef:A (2.07) BS01 NAP ? GO:0016054 ... Q39R98 24878278
    175249 3pef:A (2.07) BS02 GOL ? GO:0016054 ... Q39R98 24878278
    175250 3pef:A (2.07) BS03 GOL ? GO:0016054 ... Q39R98 24878278
    175251 3pef:A (2.07) BS04 GOL ? GO:0016054 ... Q39R98 24878278
    175252 3pef:B (2.07) BS01 NAP ? GO:0016054 ... Q39R98 24878278
    175253 3pef:C (2.07) BS01 NAP ? GO:0016054 ... Q39R98 24878278
    175254 3pef:C (2.07) BS02 GOL ? GO:0016054 ... Q39R98 24878278
    175255 3pef:D (2.07) BS01 NAP ? GO:0016054 ... Q39R98 24878278
    175256 3pef:E (2.07) BS01 NAP ? GO:0016054 ... Q39R98 24878278
    175257 3pef:E (2.07) BS02 GOL ? GO:0016054 ... Q39R98 24878278
    175258 3pef:F (2.07) BS01 NAP ? GO:0016054 ... Q39R98 24878278
    175259 3pef:G (2.07) BS01 NAP ? GO:0016054 ... Q39R98 24878278
    175260 3pef:H (2.07) BS01 NAP ? GO:0016054 ... Q39R98 24878278
    175261 3peh:A (2.75) BS01 IBD ? GO:0005524 ... Q8I0V4 N/A
    175262 3peh:B (2.75) BS01 IBD ? GO:0005524 ... Q8I0V4 N/A
    175263 3pej:A (2.81) BS01 BC2 ? GO:0005524 ... Q8I0V4 N/A
    175264 3pej:B (2.81) BS01 BC2 ? GO:0005524 ... Q8I0V4 N/A
    175265 3pel:A (1.9) BS01 HEM ? GO:0005344 ... P60529 21543841
    175266 3pel:B (1.9) BS01 HEM ? GO:0005344 ... P60524 21543841
    175267 3pen:A (2.3005) BS01 GDP 3.6.5.3 GO:0000049 ... Q980A5 N/A
    175268 3pen:A (2.3005) BS02 5GP 3.6.5.3 GO:0000049 ... Q980A5 N/A
    175269 3pen:A (2.3005) BS03 MG 3.6.5.3 GO:0000049 ... Q980A5 N/A
    175270 3pen:A (2.3005) BS04 MG 3.6.5.3 GO:0000049 ... Q980A5 N/A
    175271 3pen:A (2.3005) BS05 MG 3.6.5.3 GO:0000049 ... Q980A5 N/A
    175272 3peo:A (2.1) BS01 CU9 ? GO:0004888 ... Q8WSF8 N/A
    175273 3peo:A (2.1) BS02 CU9 ? GO:0004888 ... Q8WSF8 N/A
    175274 3peo:B (2.1) BS01 CU9 ? GO:0004888 ... Q8WSF8 N/A
    175275 3peo:C (2.1) BS01 CU9 ? GO:0004888 ... Q8WSF8 N/A
    175276 3peo:D (2.1) BS01 CU9 ? GO:0004888 ... Q8WSF8 N/A
    175277 3peo:D (2.1) BS02 CU9 ? GO:0004888 ... Q8WSF8 N/A
    175278 3peo:E (2.1) BS01 CU9 ? GO:0004888 ... Q8WSF8 N/A
    175279 3peo:E (2.1) BS02 CU9 ? GO:0004888 ... Q8WSF8 N/A
    175280 3peo:F (2.1) BS01 CU9 ? GO:0004888 ... Q8WSF8 N/A
    175281 3peo:F (2.1) BS02 CU9 ? GO:0004888 ... Q8WSF8 N/A
    175282 3peo:G (2.1) BS01 CU9 ? GO:0004888 ... Q8WSF8 N/A
    175283 3peo:H (2.1) BS01 CU9 ? GO:0004888 ... Q8WSF8 N/A
    175284 3peo:I (2.1) BS01 CU9 ? GO:0004888 ... Q8WSF8 N/A
    175285 3peo:I (2.1) BS02 CU9 ? GO:0004888 ... Q8WSF8 N/A
    175286 3peo:J (2.1) BS01 CU9 ? GO:0004888 ... Q8WSF8 N/A
    175287 3peo:J (2.1) BS02 CU9 ? GO:0004888 ... Q8WSF8 N/A
    175288 3pep:A (2.3) BS01 EOH 3.4.23.1 GO:0004190 ... P00791 2217165
    175289 3peq:A (2.4) BS01 3EQ ? GO:0003677 ... Q03181 21414782 MOAD: ic50=31.6nM
    175290 3peq:A (2.4) BS02 JZR ? GO:0003677 ... Q03181 21414782
    175291 3peq:A (2.4) BS03 JZR ? GO:0003677 ... Q03181 21414782
    175292 3peq:B (2.4) BS01 3EQ ? GO:0003677 ... Q03181 21414782 MOAD: ic50=31.6nM
    175293 3peq:B (2.4) BS02 JZR ? GO:0003677 ... Q03181 21414782
    175294 3per:A (2.1) BS01 FE 1.14.13.208 GO:0005829 ... Q9AIX7 21632537
    175295 3per:A (2.1) BS02 FE 1.14.13.208 GO:0005829 ... Q9AIX7 21632537
    175296 3per:B (2.1) BS01 FE 1.14.13.208 GO:0005829 ... Q9AIX7 21632537
    175297 3per:B (2.1) BS02 FE 1.14.13.208 GO:0005829 ... Q9AIX7 21632537
    175298 3peu:A (2.6) BS01 IHP 3.6.4.13 N/A P20449 21441902
    175299 3peu:B (2.6) BS01 IHP ? GO:0005643 ... Q12315 21441902
    175300 3pev:A (2.499) BS01 IHP 3.6.4.13 N/A P20449 21441902
    175301 3pev:B (2.499) BS01 IHP ? GO:0005643 ... Q12315 21441902
    175302 3pew:A (1.501) BS01 rna 3.6.4.13 GO:0003676 ... P20449 21441902
    175303 3pew:A (1.501) BS02 ADP 3.6.4.13 GO:0003676 ... P20449 21441902
    175304 3pew:A (1.501) BS03 BEF 3.6.4.13 GO:0003676 ... P20449 21441902
    175305 3pey:A (1.401) BS01 rna 3.6.4.13 GO:0003676 ... P20449 21441902
    175306 3pey:A (1.401) BS02 ADP 3.6.4.13 GO:0003676 ... P20449 21441902
    175307 3pey:A (1.401) BS03 BEF 3.6.4.13 GO:0003676 ... P20449 21441902
    175308 3pf1:A (2.7) BS01 C8E ? GO:0009279 ... P10384 21593406
    175309 3pf1:A (2.7) BS02 C8E ? GO:0009279 ... P10384 21593406
    175310 3pf1:A (2.7) BS03 C8E ? GO:0009279 ... P10384 21593406
    175311 3pf1:A (2.7) BS04 C8E ? GO:0009279 ... P10384 21593406
    175312 3pf1:B (2.7) BS01 C8E ? GO:0009279 ... P10384 21593406
    175313 3pf1:B (2.7) BS02 C8E ? GO:0009279 ... P10384 21593406
    175314 3pf1:B (2.7) BS03 C8E ? GO:0009279 ... P10384 21593406
    175315 3pf2:A (1.7) BS01 CA ? N/A Q8E0S9 21333654
    175316 3pf2:A (1.7) BS02 CA ? N/A Q8E0S9 21333654
    175317 3pf3:A (2.098) BS01 CA 4.2.3.3
    5.3.1.1
    GO:0004807 ... P36186 21786322
    175318 3pf4:B (1.38) BS01 rna ? GO:0003676 ... P32081 22128343
    175319 3pf5:A (1.68) BS01 rna ? GO:0003676 ... P32081 22128343
    175320 3pf5:B (1.68) BS01 rna ? GO:0003676 ... P32081 22128343
    175321 3pf7:A (1.903) BS01 FE 1.14.13.208 GO:0005829 ... Q9AIX7 21632537
    175322 3pf7:A (1.903) BS02 FE 1.14.13.208 GO:0005829 ... Q9AIX7 21632537
    175323 3pf7:B (1.903) BS01 FE 1.14.13.208 GO:0005829 ... Q9AIX7 21632537
    175324 3pf7:B (1.903) BS02 FE 1.14.13.208 GO:0005829 ... Q9AIX7 21632537
    175325 3pfb:A (1.58) BS01 ZYC 3.1.1.- GO:0052689 ... D3YEX6 21876742
    175326 3pfb:B (1.58) BS01 ZYC 3.1.1.- GO:0052689 ... D3YEX6 21876742
    175327 3pfc:A (1.75) BS01 FER 3.1.1.- GO:0052689 ... D3YEX6 21876742
    175328 3pfd:A (2.1) BS01 FDA 1.3.99.3 GO:0003995 ... G7CNE7 21359836
    175329 3pfd:A (2.1) BS02 FDA 1.3.99.3 GO:0003995 ... G7CNE7 21359836
    175330 3pfd:B (2.1) BS01 FDA 1.3.99.3 GO:0003995 ... G7CNE7 21359836
    175331 3pfd:B (2.1) BS02 FDA 1.3.99.3 GO:0003995 ... G7CNE7 21359836
    175332 3pfd:C (2.1) BS01 FDA 1.3.99.3 GO:0003995 ... G7CNE7 21359836
    175333 3pfd:C (2.1) BS02 FDA 1.3.99.3 GO:0003995 ... G7CNE7 21359836
    175334 3pfd:D (2.1) BS01 FDA 1.3.99.3 GO:0003995 ... G7CNE7 21359836
    175335 3pfd:D (2.1) BS02 FDA 1.3.99.3 GO:0003995 ... G7CNE7 21359836
    175336 3pfe:A (1.5) BS01 ZN ? GO:0006508 ... Q5ZXC3 N/A
    175337 3pfe:A (1.5) BS02 ZN ? GO:0006508 ... Q5ZXC3 N/A
    175338 3pff:A (2.3) BS01 MG 2.3.3.8 GO:0003824 ... P53396 22102020
    175339 3pff:A (2.3) BS02 MG 2.3.3.8 GO:0003824 ... P53396 22102020
    175340 3pff:A (2.3) BS03 ADP 2.3.3.8 GO:0003824 ... P53396 22102020
    175341 3pfg:A (1.349) BS01 SAM 2.1.1.235 GO:0008168 ... P95748 21142177
    175342 3pfg:A (1.349) BS02 TLO 2.1.1.235 GO:0008168 ... P95748 21142177
    175343 3pfh:A (1.792) BS01 SAH 2.1.1.235 GO:0008168 ... P95748 21142177
    175344 3pfh:A (1.792) BS02 T3Q 2.1.1.235 GO:0008168 ... P95748 21142177
    175345 3pfh:D (1.792) BS01 SAH 2.1.1.235 GO:0008168 ... P95748 21142177
    175346 3pfh:D (1.792) BS02 T3Q 2.1.1.235 GO:0008168 ... P95748 21142177
    175347 3pfi:A (2.695) BS01 ADP 3.6.4.12 GO:0000400 ... Q9PMT7 N/A
    175348 3pfi:B (2.695) BS01 ADP 3.6.4.12 GO:0000400 ... Q9PMT7 N/A
    175349 3pfk:A (2.4) BS01 PO4 2.7.1.11 GO:0003872 ... P00512 6115424
    175350 3pfk:A (2.4) BS02 PO4 2.7.1.11 GO:0003872 ... P00512 6115424
    175351 3pfo:A (1.9) BS01 ZN 3.5.1.16 GO:0008777 ... Q6N7D3 N/A
    175352 3pfo:A (1.9) BS02 ZN 3.5.1.16 GO:0008777 ... Q6N7D3 N/A
    175353 3pfo:B (1.9) BS01 ZN 3.5.1.16 GO:0008777 ... Q6N7D3 N/A
    175354 3pfo:B (1.9) BS02 ZN 3.5.1.16 GO:0008777 ... Q6N7D3 N/A
    175355 3pfp:A (2.35) BS01 MN 2.5.1.54 GO:0003849 ... O53512 21454647
    175356 3pfp:A (2.35) BS02 035 2.5.1.54 GO:0003849 ... O53512 21454647
    175357 3pfp:A (2.35) BS03 036 2.5.1.54 GO:0003849 ... O53512 21454647
    175358 3pfp:B (2.35) BS01 MN 2.5.1.54 GO:0003849 ... O53512 21454647
    175359 3pfp:B (2.35) BS02 036 2.5.1.54 GO:0003849 ... O53512 21454647
    175360 3pfp:B (2.35) BS03 035 2.5.1.54 GO:0003849 ... O53512 21454647
    175361 3pfq:A (4.0) BS01 CA 2.7.11.13 GO:0003682 ... P68403 21215369
    175362 3pfq:A (4.0) BS02 CA 2.7.11.13 GO:0003682 ... P68403 21215369
    175363 3pfq:A (4.0) BS03 CA 2.7.11.13 GO:0003682 ... P68403 21215369
    175364 3pfq:A (4.0) BS04 ZN 2.7.11.13 GO:0003682 ... P68403 21215369
    175365 3pfq:A (4.0) BS05 ZN 2.7.11.13 GO:0003682 ... P68403 21215369
    175366 3pfq:A (4.0) BS06 ANP 2.7.11.13 GO:0003682 ... P68403 21215369
    175367 3pfr:A (1.899) BS01 MG ? GO:0009063 ... A6VQF6 N/A
    175368 3pfr:A (1.899) BS02 GKR ? GO:0009063 ... A6VQF6 N/A
    175369 3pfr:B (1.899) BS01 MG ? GO:0009063 ... A6VQF6 N/A
    175370 3pfr:B (1.899) BS02 GKR ? GO:0009063 ... A6VQF6 N/A
    175371 3pfr:C (1.899) BS01 MG ? GO:0009063 ... A6VQF6 N/A
    175372 3pfr:C (1.899) BS02 GKR ? GO:0009063 ... A6VQF6 N/A
    175373 3pfr:D (1.899) BS01 MG ? GO:0009063 ... A6VQF6 N/A
    175374 3pfr:D (1.899) BS02 GKR ? GO:0009063 ... A6VQF6 N/A
    175375 3pft:A (1.601) BS01 FMN 1.5.1.37
    1.5.1.42
    GO:0005737 ... B6CDL6 N/A
    175376 3pft:B (1.601) BS01 FMN 1.5.1.37
    1.5.1.42
    GO:0005737 ... B6CDL6 N/A
    175377 3pfv:A (2.27) BS01 peptide 2.3.2.27 GO:0001784 ... Q13191 N/A
    175378 3pfv:B (2.27) BS01 peptide 2.3.2.27 GO:0001784 ... Q13191 N/A
    175379 3pfw:O (2.15) BS01 NAD 1.2.1.12 GO:0006006 ... O14556 21269272
    175380 3pfw:O (2.15) BS02 GOL 1.2.1.12 GO:0006006 ... O14556 21269272
    175381 3pfw:O (2.15) BS03 GOL 1.2.1.12 GO:0006006 ... O14556 21269272
    175382 3pfw:O (2.15) BS04 GOL 1.2.1.12 GO:0006006 ... O14556 21269272
    175383 3pfw:P (2.15) BS01 NAD 1.2.1.12 GO:0006006 ... O14556 21269272
    175384 3pfw:P (2.15) BS02 GOL 1.2.1.12 GO:0006006 ... O14556 21269272
    175385 3pfw:P (2.15) BS03 GOL 1.2.1.12 GO:0006006 ... O14556 21269272
    175386 3pfx:A (1.2616) BS01 BGC 3.2.1.-
    3.2.1.91
    GO:0004553 ... Q8TFL9 N/A
    175387 3pfx:A (1.2616) BS02 BGC 3.2.1.-
    3.2.1.91
    GO:0004553 ... Q8TFL9 N/A
    175388 3pfz:A (1.0993) BS01 BGC 3.2.1.-
    3.2.1.91
    GO:0004553 ... Q8TFL9 N/A
    175389 3pfz:A (1.0993) BS02 BGC 3.2.1.-
    3.2.1.91
    GO:0004553 ... Q8TFL9 N/A
    175390 3pfz:A (1.0993) BS03 BGC 3.2.1.-
    3.2.1.91
    GO:0004553 ... Q8TFL9 N/A
    175391 3pfz:A (1.0993) BS04 BGC 3.2.1.-
    3.2.1.91
    GO:0004553 ... Q8TFL9 N/A
    175392 3pfz:A (1.0993) BS05 BGC 3.2.1.-
    3.2.1.91
    GO:0004553 ... Q8TFL9 N/A
    175393 3pfz:A (1.0993) BS06 BGC 3.2.1.-
    3.2.1.91
    GO:0004553 ... Q8TFL9 N/A
    175394 3pg2:A (1.8) BS01 CA ? N/A Q8E0S9 21333654
    175395 3pg2:A (1.8) BS02 CA ? N/A Q8E0S9 21333654
    175396 3pg2:B (1.8) BS01 CA ? N/A Q8E0S9 21333654
    175397 3pg2:B (1.8) BS02 CA ? N/A Q8E0S9 21333654
    175398 3pg3:A (2.0) BS01 DG7 2.7.11.24 GO:0000165 ... Q16539 N/A BindingDB: IC50=3641nM, Kd=1656nM
    175399 3pg7:B (2.189) BS01 POP ? N/A P21359 21089070
    175400 3pg9:A (2.35) BS01 TYR 2.5.1.54 GO:0003849 ... Q9WYH8 21282100

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).