SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    176601 3pt6:A (3.0) BS03 SAH 2.1.1.37 GO:0003677 ... P13864 21163962
    176602 3pt6:A (3.0) BS04 ZN 2.1.1.37 GO:0003677 ... P13864 21163962
    176603 3pt6:A (3.0) BS05 ZN 2.1.1.37 GO:0003677 ... P13864 21163962
    176604 3pt6:A (3.0) BS06 ZN 2.1.1.37 GO:0003677 ... P13864 21163962
    176605 3pt6:A (3.0) BS07 ZN 2.1.1.37 GO:0003677 ... P13864 21163962
    176606 3pt6:B (3.0) BS01 dna 2.1.1.37 GO:0003677 ... P13864 21163962
    176607 3pt6:B (3.0) BS02 dna 2.1.1.37 GO:0003677 ... P13864 21163962
    176608 3pt6:B (3.0) BS03 ZN 2.1.1.37 GO:0003677 ... P13864 21163962
    176609 3pt6:B (3.0) BS04 SAH 2.1.1.37 GO:0003677 ... P13864 21163962
    176610 3pt6:B (3.0) BS05 ZN 2.1.1.37 GO:0003677 ... P13864 21163962
    176611 3pt6:B (3.0) BS06 ZN 2.1.1.37 GO:0003677 ... P13864 21163962
    176612 3pt6:B (3.0) BS07 ZN 2.1.1.37 GO:0003677 ... P13864 21163962
    176613 3pt7:A (2.15) BS01 HEM ? GO:0019825 ... P41261 N/A
    176614 3pt7:B (2.15) BS01 HEM ? GO:0005737 ... P41262 N/A
    176615 3pt7:B (2.15) BS02 OXY ? GO:0005737 ... P41262 N/A
    176616 3pt8:A (1.762) BS01 HEM ? GO:0019825 ... P41261 N/A
    176617 3pt8:B (1.762) BS01 HEM ? GO:0005737 ... P41262 N/A
    176618 3pt9:A (2.5) BS01 SAH 2.1.1.37 GO:0003682 ... P13864 21163962
    176619 3pt9:A (2.5) BS02 ZN 2.1.1.37 GO:0003682 ... P13864 21163962
    176620 3pt9:A (2.5) BS03 ZN 2.1.1.37 GO:0003682 ... P13864 21163962
    176621 3pta:A (3.6) BS01 dna 2.1.1.37 GO:0003677 ... P26358 21163962
    176622 3pta:A (3.6) BS02 dna 2.1.1.37 GO:0003677 ... P26358 21163962
    176623 3pta:A (3.6) BS03 SAH 2.1.1.37 GO:0003677 ... P26358 21163962 BindingDB: IC50=4000nM
    176624 3pta:A (3.6) BS04 ZN 2.1.1.37 GO:0003677 ... P26358 21163962
    176625 3pta:A (3.6) BS05 ZN 2.1.1.37 GO:0003677 ... P26358 21163962
    176626 3pta:A (3.6) BS06 ZN 2.1.1.37 GO:0003677 ... P26358 21163962
    176627 3pta:A (3.6) BS07 ZN 2.1.1.37 GO:0003677 ... P26358 21163962
    176628 3ptb:A (1.7) BS01 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    176629 3ptg:A (2.43) BS01 peptide 2.7.11.24 GO:0004672 ... P53779 21316234
    176630 3ptg:A (2.43) BS02 932 2.7.11.24 GO:0004672 ... P53779 21316234 MOAD: ic50=25nM
    BindingDB: IC50=<100nM
    176631 3pth:A (1.7) BS01 peptide ? GO:0003723 ... P11940 N/A
    176632 3ptk:A (2.49) BS01 ZN 3.2.1.21 GO:0004338 ... B8AVF0 21521631
    176633 3ptk:B (2.49) BS01 ZN 3.2.1.21 GO:0004338 ... B8AVF0 21521631
    176634 3ptl:A (1.3) BS01 peptide 3.4.21.64 GO:0004252 ... P06873 N/A
    176635 3ptm:A (2.4) BS01 G2F 3.2.1.21 GO:0004338 ... B8AVF0 21521631
    176636 3ptm:A (2.4) BS02 ZN 3.2.1.21 GO:0004338 ... B8AVF0 21521631
    176637 3ptm:B (2.4) BS01 ZN 3.2.1.21 GO:0004338 ... B8AVF0 21521631
    176638 3ptm:B (2.4) BS02 G2F 3.2.1.21 GO:0004338 ... B8AVF0 21521631
    176639 3ptn:A (1.7) BS01 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    176640 3ptq:A (2.45) BS01 NFG 3.2.1.21 GO:0004338 ... B8AVF0 21521631
    176641 3ptq:A (2.45) BS02 ZN 3.2.1.21 GO:0004338 ... B8AVF0 21521631
    176642 3ptq:B (2.45) BS01 ZN 3.2.1.21 GO:0004338 ... B8AVF0 21521631
    176643 3ptq:B (2.45) BS02 NFG 3.2.1.21 GO:0004338 ... B8AVF0 21521631
    176644 3ptx:A (3.0) BS01 rna ? GO:0003723 ... P03521 21177817
    176645 3ptx:B (3.0) BS01 rna ? GO:0003723 ... P03521 21177817
    176646 3ptx:C (3.0) BS01 rna ? GO:0003723 ... P03521 21177817
    176647 3ptx:D (3.0) BS01 rna ? GO:0003723 ... P03521 21177817
    176648 3ptx:E (3.0) BS01 rna ? GO:0003723 ... P03521 21177817
    176649 3pty:A (2.0) BS01 AFO 2.4.2.- N/A P9WNL5 21383969
    176650 3pty:A (2.0) BS02 CA 2.4.2.- N/A P9WNL5 21383969
    176651 3ptz:A (2.5) BS01 NAD 1.1.1.22 GO:0001702 ... O60701 21595445
    176652 3ptz:A (2.5) BS02 UDX 1.1.1.22 GO:0001702 ... O60701 21595445
    176653 3ptz:B (2.5) BS01 NAD 1.1.1.22 GO:0001702 ... O60701 21595445
    176654 3ptz:B (2.5) BS02 UDX 1.1.1.22 GO:0001702 ... O60701 21595445
    176655 3ptz:C (2.5) BS01 NAD 1.1.1.22 GO:0001702 ... O60701 21595445
    176656 3ptz:C (2.5) BS02 UDX 1.1.1.22 GO:0001702 ... O60701 21595445
    176657 3ptz:D (2.5) BS01 NAD 1.1.1.22 GO:0001702 ... O60701 21595445
    176658 3ptz:D (2.5) BS02 UDX 1.1.1.22 GO:0001702 ... O60701 21595445
    176659 3ptz:E (2.5) BS01 NAD 1.1.1.22 GO:0001702 ... O60701 21595445
    176660 3ptz:E (2.5) BS02 UDX 1.1.1.22 GO:0001702 ... O60701 21595445
    176661 3ptz:F (2.5) BS01 NAD 1.1.1.22 GO:0001702 ... O60701 21595445
    176662 3ptz:F (2.5) BS02 UDX 1.1.1.22 GO:0001702 ... O60701 21595445
    176663 3pu0:A (3.09) BS01 rna ? GO:0003723 ... P03521 21177817
    176664 3pu0:B (3.09) BS01 rna ? GO:0003723 ... P03521 21177817
    176665 3pu0:C (3.09) BS01 rna ? GO:0003723 ... P03521 21177817
    176666 3pu0:D (3.09) BS01 rna ? GO:0003723 ... P03521 21177817
    176667 3pu0:E (3.09) BS01 rna ? GO:0003723 ... P03521 21177817
    176668 3pu1:A (3.14) BS01 rna ? GO:0003723 ... P03521 21177817
    176669 3pu1:B (3.14) BS01 rna ? GO:0003723 ... P03521 21177817
    176670 3pu1:C (3.14) BS01 rna ? GO:0003723 ... P03521 21177817
    176671 3pu1:D (3.14) BS01 rna ? GO:0003723 ... P03521 21177817
    176672 3pu1:E (3.14) BS01 rna ? GO:0003723 ... P03521 21177817
    176673 3pu3:A (1.95) BS01 OGA 1.14.11.- N/A O75151 21167174
    176674 3pu3:B (1.95) BS01 OGA 1.14.11.- N/A O75151 21167174
    176675 3pu4:A (3.0) BS01 rna ? GO:0003723 ... P03521 21177817
    176676 3pu4:B (3.0) BS01 rna ? GO:0003723 ... P03521 21177817
    176677 3pu4:C (3.0) BS01 rna ? GO:0003723 ... P03521 21177817
    176678 3pu4:D (3.0) BS01 rna ? GO:0003723 ... P03521 21177817
    176679 3pu4:E (3.0) BS01 rna ? GO:0003723 ... P03521 21177817
    176680 3pu7:A (1.8) BS01 ZN 1.15.1.1 GO:0005507 ... P14831 N/A
    176681 3pu7:A (1.8) BS02 CU 1.15.1.1 GO:0005507 ... P14831 N/A
    176682 3pu7:B (1.8) BS01 ZN 1.15.1.1 GO:0005507 ... P14831 N/A
    176683 3pu7:B (1.8) BS02 CU 1.15.1.1 GO:0005507 ... P14831 N/A
    176684 3pu8:A (1.943) BS01 OGA 1.14.11.- N/A O75151 21167174
    176685 3pu8:A (1.943) BS02 FE 1.14.11.- N/A O75151 21167174
    176686 3pu8:B (1.943) BS01 OGA 1.14.11.- N/A O75151 21167174
    176687 3pu8:B (1.943) BS02 FE 1.14.11.- N/A O75151 21167174
    176688 3pu9:A (1.55) BS01 MG ? N/A D1C2D8 N/A
    176689 3pu9:A (1.55) BS02 MG ? N/A D1C2D8 N/A
    176690 3pu9:B (1.55) BS01 MG ? N/A D1C2D8 N/A
    176691 3pu9:B (1.55) BS02 MG ? N/A D1C2D8 N/A
    176692 3pua:A (1.89) BS01 OGA 1.14.11.- N/A O75151 21167174
    176693 3pue:B (2.6) BS01 LYS 4.3.3.7 GO:0005737 ... D0CFC3 N/A
    176694 3pug:A (2.7) BS01 GLV 2.3.3.9 GO:0000287 ... D4GTL2 21569248
    176695 3pug:A (2.7) BS02 MG 2.3.3.9 GO:0000287 ... D4GTL2 21569248
    176696 3puj:A (3.313) BS01 peptide ? GO:0000149 ... P61765 21193638
    176697 3puj:B (3.313) BS01 peptide ? GO:0000149 ... P61765 21193638
    176698 3puk:A (3.054) BS01 peptide ? GO:0001678 ... Q60770 21193638
    176699 3puk:B (3.054) BS01 peptide ? GO:0001678 ... Q60770 21193638
    176700 3pul:B (2.3) BS01 LYS 4.3.3.7 GO:0005737 ... D0CFC3 N/A
    176701 3pun:A (2.05) BS01 FUC ? N/A Q91H09 21811409
    176702 3pun:B (2.05) BS01 FUC ? N/A Q91H09 21811409
    176703 3puo:A (2.65) BS01 LYS 4.3.3.7 GO:0005737 ... Q9I4W3 21396954
    176704 3puo:A (2.65) BS02 LYS 4.3.3.7 GO:0005737 ... Q9I4W3 21396954
    176705 3puo:B (2.65) BS01 LYS 4.3.3.7 GO:0005737 ... Q9I4W3 21396954
    176706 3pup:A (2.99) BS01 OS1 2.7.11.1
    2.7.11.26
    GO:0001837 ... P49841 21446733
    176707 3pup:B (2.99) BS01 OS1 2.7.11.1
    2.7.11.26
    GO:0001837 ... P49841 21446733
    176708 3puq:A (2.25) BS01 FE2 1.14.11.- N/A Q9GYI0 21251613
    176709 3puq:A (2.25) BS02 ZN 1.14.11.- N/A Q9GYI0 21251613
    176710 3puq:A (2.25) BS03 ZN 1.14.11.- N/A Q9GYI0 21251613
    176711 3puq:A (2.25) BS04 AKG 1.14.11.- N/A Q9GYI0 21251613
    176712 3puq:C (2.25) BS01 FE2 1.14.11.- N/A Q9GYI0 21251613
    176713 3puq:C (2.25) BS02 ZN 1.14.11.- N/A Q9GYI0 21251613
    176714 3puq:C (2.25) BS03 ZN 1.14.11.- N/A Q9GYI0 21251613
    176715 3puq:C (2.25) BS04 AKG 1.14.11.- N/A Q9GYI0 21251613
    176716 3pur:A (2.1) BS01 FE2 1.14.11.- N/A Q9GYI0 21251613
    176717 3pur:A (2.1) BS02 ZN 1.14.11.- N/A Q9GYI0 21251613
    176718 3pur:A (2.1) BS03 ZN 1.14.11.- N/A Q9GYI0 21251613
    176719 3pur:A (2.1) BS04 2HG 1.14.11.- N/A Q9GYI0 21251613 MOAD: Ki=10.87mM
    176720 3pur:C (2.1) BS01 FE2 1.14.11.- N/A Q9GYI0 21251613
    176721 3pur:C (2.1) BS02 ZN 1.14.11.- N/A Q9GYI0 21251613
    176722 3pur:C (2.1) BS03 ZN 1.14.11.- N/A Q9GYI0 21251613
    176723 3pur:C (2.1) BS04 2HG 1.14.11.- N/A Q9GYI0 21251613 MOAD: Ki=10.87mM
    176724 3pus:A (2.08) BS01 OGA 1.14.11.- N/A O75151 21167174
    176725 3pus:B (2.08) BS01 OGA 1.14.11.- N/A O75151 21167174
    176726 3puu:A (2.15) BS01 ZN 3.4.11.2 GO:0004177 ... P04825 22025387
    176727 3puv:A (2.4) BS01 MG 7.5.2.1 GO:0005515 ... P68187 21825153
    176728 3puv:A (2.4) BS02 ADP 7.5.2.1 GO:0005515 ... P68187 21825153
    176729 3puv:A (2.4) BS03 ADP 7.5.2.1 GO:0005515 ... P68187 21825153
    176730 3puv:B (2.4) BS01 ADP 7.5.2.1 GO:0005515 ... P68187 21825153
    176731 3puv:B (2.4) BS02 MG 7.5.2.1 GO:0005515 ... P68187 21825153
    176732 3puv:B (2.4) BS03 ADP 7.5.2.1 GO:0005515 ... P68187 21825153
    176733 3puv:F (2.4) BS01 GLC ? GO:0005515 ... P02916 21825153
    176734 3puv:F (2.4) BS02 GLC ? GO:0005515 ... P02916 21825153
    176735 3puw:A (2.3) BS01 MG 7.5.2.1 GO:0005515 ... P68187 21825153
    176736 3puw:A (2.3) BS02 ADP 7.5.2.1 GO:0005515 ... P68187 21825153
    176737 3puw:A (2.3) BS03 ALF 7.5.2.1 GO:0005515 ... P68187 21825153
    176738 3puw:A (2.3) BS04 ADP 7.5.2.1 GO:0005515 ... P68187 21825153
    176739 3puw:A (2.3) BS05 ALF 7.5.2.1 GO:0005515 ... P68187 21825153
    176740 3puw:B (2.3) BS01 ADP 7.5.2.1 GO:0005515 ... P68187 21825153
    176741 3puw:B (2.3) BS02 ALF 7.5.2.1 GO:0005515 ... P68187 21825153
    176742 3puw:B (2.3) BS03 MG 7.5.2.1 GO:0005515 ... P68187 21825153
    176743 3puw:B (2.3) BS04 ADP 7.5.2.1 GO:0005515 ... P68187 21825153
    176744 3puw:B (2.3) BS05 ALF 7.5.2.1 GO:0005515 ... P68187 21825153
    176745 3puw:F (2.3) BS01 GLC ? GO:0005515 ... P02916 21825153
    176746 3puw:F (2.3) BS02 GLC ? GO:0005515 ... P02916 21825153
    176747 3pux:A (2.3) BS01 MG 7.5.2.1 GO:0005515 ... P68187 21825153
    176748 3pux:A (2.3) BS02 ADP 7.5.2.1 GO:0005515 ... P68187 21825153
    176749 3pux:A (2.3) BS03 BEF 7.5.2.1 GO:0005515 ... P68187 21825153
    176750 3pux:A (2.3) BS04 ADP 7.5.2.1 GO:0005515 ... P68187 21825153
    176751 3pux:A (2.3) BS05 BEF 7.5.2.1 GO:0005515 ... P68187 21825153
    176752 3pux:B (2.3) BS01 ADP 7.5.2.1 GO:0005515 ... P68187 21825153
    176753 3pux:B (2.3) BS02 BEF 7.5.2.1 GO:0005515 ... P68187 21825153
    176754 3pux:B (2.3) BS03 MG 7.5.2.1 GO:0005515 ... P68187 21825153
    176755 3pux:B (2.3) BS04 ADP 7.5.2.1 GO:0005515 ... P68187 21825153
    176756 3pux:B (2.3) BS05 BEF 7.5.2.1 GO:0005515 ... P68187 21825153
    176757 3pux:F (2.3) BS01 GLC ? GO:0005515 ... P02916 21825153
    176758 3pux:F (2.3) BS02 GLC ? GO:0005515 ... P02916 21825153
    176759 3puy:A (3.1) BS01 MG 7.5.2.1 GO:0005515 ... P68187 21566157
    176760 3puy:A (3.1) BS02 ANP 7.5.2.1 GO:0005515 ... P68187 21566157
    176761 3puy:A (3.1) BS03 ANP 7.5.2.1 GO:0005515 ... P68187 21566157
    176762 3puy:B (3.1) BS01 ANP 7.5.2.1 GO:0005515 ... P68187 21566157
    176763 3puy:B (3.1) BS02 MG 7.5.2.1 GO:0005515 ... P68187 21566157
    176764 3puy:B (3.1) BS03 ANP 7.5.2.1 GO:0005515 ... P68187 21566157
    176765 3puy:F (3.1) BS01 GLC ? GO:0005515 ... P02916 21566157
    176766 3puy:F (3.1) BS02 GLC ? GO:0005515 ... P02916 21566157
    176767 3puz:A (2.9) BS01 MG 7.5.2.1 GO:0005515 ... P68187 21566157
    176768 3puz:A (2.9) BS02 ANP 7.5.2.1 GO:0005515 ... P68187 21566157
    176769 3puz:B (2.9) BS01 MG 7.5.2.1 GO:0005515 ... P68187 21566157
    176770 3puz:B (2.9) BS02 ANP 7.5.2.1 GO:0005515 ... P68187 21566157
    176771 3puz:E (2.9) BS01 GLC ? GO:0005515 ... P0AEX9 21566157
    176772 3puz:E (2.9) BS02 GLC ? GO:0005515 ... P0AEX9 21566157
    176773 3puz:F (2.9) BS01 GLC ? GO:0005515 ... P02916 21566157
    176774 3puz:F (2.9) BS02 GLC ? GO:0005515 ... P02916 21566157
    176775 3pv0:E (3.1) BS01 GLC ? GO:0005515 ... P0AEX9 21566157
    176776 3pv0:E (3.1) BS02 GLC ? GO:0005515 ... P0AEX9 21566157
    176777 3pv0:F (3.1) BS01 GLC ? GO:0005515 ... P02916 21566157
    176778 3pv0:F (3.1) BS02 GLC ? GO:0005515 ... P02916 21566157
    176779 3pv3:A (3.1) BS01 peptide ? GO:0004252 ... F8W673 21670246
    176780 3pv3:B (3.1) BS01 peptide ? GO:0004252 ... F8W673 21670246
    176781 3pv3:C (3.1) BS01 peptide ? GO:0004252 ... F8W673 21670246
    176782 3pv3:D (3.1) BS01 peptide ? GO:0004252 ... F8W673 21670246
    176783 3pv8:A (1.52) BS01 dna 2.7.7.7 GO:0003676 ... Q5KWC1 22006298
    176784 3pv8:A (1.52) BS02 dna 2.7.7.7 GO:0003676 ... Q5KWC1 22006298
    176785 3pv8:A (1.52) BS03 MG 2.7.7.7 GO:0003676 ... Q5KWC1 22006298
    176786 3pv8:A (1.52) BS04 D3T 2.7.7.7 GO:0003676 ... Q5KWC1 22006298
    176787 3pv8:D (1.52) BS01 dna 2.7.7.7 GO:0003676 ... Q5KWC1 22006298
    176788 3pv8:D (1.52) BS02 dna 2.7.7.7 GO:0003676 ... Q5KWC1 22006298
    176789 3pv8:D (1.52) BS03 MG 2.7.7.7 GO:0003676 ... Q5KWC1 22006298
    176790 3pv8:D (1.52) BS04 D3T 2.7.7.7 GO:0003676 ... Q5KWC1 22006298
    176791 3pvb:A (3.3) BS01 ANP 2.7.11.11 GO:0000287 ... P05132 21300294
    176792 3pvb:A (3.3) BS02 MN 2.7.11.11 GO:0000287 ... P05132 21300294
    176793 3pvb:A (3.3) BS03 MN 2.7.11.11 GO:0000287 ... P05132 21300294
    176794 3pvc:A (2.31) BS01 FAD 1.5.-.-
    2.1.1.61
    GO:0002097 ... Q8ZD36 23617613
    176795 3pvd:A (1.9) BS01 FUC ? N/A Q91H09 21811409
    176796 3pvd:A (1.9) BS02 FUC ? N/A Q91H09 21811409
    176797 3pvd:B (1.9) BS01 FUC ? N/A Q91H09 21811409
    176798 3pvf:A (1.73) BS01 PGA 5.3.1.1 GO:0004807 ... Q07412 21447068
    176799 3pvg:A (1.5) BS01 K68 2.7.11.1 GO:0004672 ... P28523 21513497
    176800 3pvh:A (1.6) BS01 CA ? N/A Q9ZVL6 21908686

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).