SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    177201 3pzp:B (3.336) BS04 MG 2.7.7.7 GO:0003684 ... Q9UBT6 21354175
    177202 3pzq:A (1.92) BS01 GLC 3.2.1.78 GO:0000272 ... A5IMX7 N/A
    177203 3pzq:A (1.92) BS02 GLC 3.2.1.78 GO:0000272 ... A5IMX7 N/A
    177204 3pzq:A (1.92) BS03 GLC 3.2.1.78 GO:0000272 ... A5IMX7 N/A
    177205 3pzq:A (1.92) BS04 GLC 3.2.1.78 GO:0000272 ... A5IMX7 N/A
    177206 3pzr:A (1.75) BS01 CYS 1.2.1.11 GO:0004073 ... Q9KQG2 22039970
    177207 3pzr:A (1.75) BS02 NAP 1.2.1.11 GO:0004073 ... Q9KQG2 22039970
    177208 3pzr:B (1.75) BS01 CYS 1.2.1.11 GO:0004073 ... Q9KQG2 22039970
    177209 3pzr:B (1.75) BS02 NAP 1.2.1.11 GO:0004073 ... Q9KQG2 22039970
    177210 3pzt:A (1.97) BS01 MN 3.2.1.4 GO:0000272 ... P10475 21880019
    177211 3pzt:B (1.97) BS01 MN 3.2.1.4 GO:0000272 ... P10475 21880019
    177212 3pzw:A (1.4) BS01 FE2 1.13.11.12 GO:0005506 ... P08170 18441029
    177213 3q00:A (1.7) BS01 CA 3.4.21.4 GO:0004175 ... P00760 25003390
    177214 3q00:A (1.7) BS02 PMJ 3.4.21.4 GO:0004175 ... P00760 25003390
    177215 3q01:A (2.1) BS01 ZN ? GO:0000976 ... P04637 21522129
    177216 3q01:B (2.1) BS01 ZN ? GO:0000976 ... P04637 21522129
    177217 3q02:A (2.3) BS01 CL ? GO:0001525 ... P05121 21697084
    177218 3q02:B (2.3) BS01 ZN ? GO:0001525 ... P05121 21697084
    177219 3q03:A (2.6401) BS01 CL ? GO:0001525 ... P05121 21697084
    177220 3q03:B (2.6401) BS01 ZN ? GO:0001525 ... P05121 21697084
    177221 3q03:B (2.6401) BS02 CL ? GO:0001525 ... P05121 21697084
    177222 3q05:A (2.4) BS01 dna ? GO:0000976 ... P04637 21522129
    177223 3q05:A (2.4) BS02 dna ? GO:0000976 ... P04637 21522129
    177224 3q05:A (2.4) BS03 ZN ? GO:0000976 ... P04637 21522129
    177225 3q05:B (2.4) BS01 dna ? GO:0000976 ... P04637 21522129
    177226 3q05:B (2.4) BS02 dna ? GO:0000976 ... P04637 21522129
    177227 3q05:B (2.4) BS03 ZN ? GO:0000976 ... P04637 21522129
    177228 3q05:C (2.4) BS01 dna ? GO:0000976 ... P04637 21522129
    177229 3q05:C (2.4) BS02 dna ? GO:0000976 ... P04637 21522129
    177230 3q05:C (2.4) BS03 ZN ? GO:0000976 ... P04637 21522129
    177231 3q05:D (2.4) BS01 dna ? GO:0000976 ... P04637 21522129
    177232 3q05:D (2.4) BS02 ZN ? GO:0000976 ... P04637 21522129
    177233 3q06:A (3.2) BS01 dna ? GO:0000976 ... P04637 21522129
    177234 3q06:A (3.2) BS02 dna ? GO:0000976 ... P04637 21522129
    177235 3q06:A (3.2) BS03 ZN ? GO:0000976 ... P04637 21522129
    177236 3q06:B (3.2) BS01 dna ? GO:0000976 ... P04637 21522129
    177237 3q06:C (3.2) BS01 dna ? GO:0000976 ... P04637 21522129
    177238 3q06:C (3.2) BS02 ZN ? GO:0000976 ... P04637 21522129
    177239 3q06:D (3.2) BS01 dna ? GO:0000976 ... P04637 21522129
    177240 3q06:D (3.2) BS02 ZN ? GO:0000976 ... P04637 21522129
    177241 3q07:A (1.5) BS01 WPP 3.5.2.6 GO:0008800 ... Q9L5C8 N/A
    177242 3q07:A (1.5) BS02 YPP 3.5.2.6 GO:0008800 ... Q9L5C8 N/A
    177243 3q07:B (1.5) BS01 WPP 3.5.2.6 GO:0008800 ... Q9L5C8 N/A
    177244 3q07:B (1.5) BS02 YPP 3.5.2.6 GO:0008800 ... Q9L5C8 N/A
    177245 3q07:B (1.5) BS03 YPP 3.5.2.6 GO:0008800 ... Q9L5C8 N/A
    177246 3q08:A (3.05) BS01 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    177247 3q08:A (3.05) BS02 CA 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    177248 3q08:B (3.05) BS01 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    177249 3q08:B (3.05) BS02 NO2 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    177250 3q08:B (3.05) BS03 CA 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    177251 3q08:C (3.05) BS01 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    177252 3q08:C (3.05) BS02 CA 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    177253 3q08:D (3.05) BS01 CA 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    177254 3q08:D (3.05) BS02 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    177255 3q08:E (3.05) BS01 CA 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    177256 3q08:E (3.05) BS02 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    177257 3q08:F (3.05) BS01 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    177258 3q08:F (3.05) BS02 CA 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    177259 3q08:G (3.05) BS01 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    177260 3q08:G (3.05) BS02 CA 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    177261 3q08:H (3.05) BS01 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    177262 3q08:H (3.05) BS02 CA 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    177263 3q08:I (3.05) BS01 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    177264 3q08:I (3.05) BS02 CA 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    177265 3q08:J (3.05) BS01 CA 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    177266 3q08:J (3.05) BS02 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    177267 3q08:K (3.05) BS01 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    177268 3q08:K (3.05) BS02 CA 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    177269 3q08:L (3.05) BS01 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    177270 3q08:L (3.05) BS02 CA 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    177271 3q08:M (3.05) BS01 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    177272 3q08:M (3.05) BS02 CA 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    177273 3q08:N (3.05) BS01 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    177274 3q08:N (3.05) BS02 CA 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    177275 3q08:O (3.05) BS01 CA 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    177276 3q08:O (3.05) BS02 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    177277 3q08:P (3.05) BS01 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    177278 3q08:P (3.05) BS02 CA 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    177279 3q08:Q (3.05) BS01 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    177280 3q08:Q (3.05) BS02 NO2 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    177281 3q08:Q (3.05) BS03 CA 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    177282 3q08:R (3.05) BS01 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    177283 3q08:R (3.05) BS02 NO2 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    177284 3q08:R (3.05) BS03 CA 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    177285 3q08:S (3.05) BS01 CA 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    177286 3q08:S (3.05) BS02 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    177287 3q08:T (3.05) BS01 CA 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    177288 3q08:T (3.05) BS02 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    177289 3q09:A (3.0) BS01 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    177290 3q09:A (3.0) BS02 NO2 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    177291 3q09:A (3.0) BS03 CA 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    177292 3q09:B (3.0) BS01 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    177293 3q09:B (3.0) BS02 NO2 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    177294 3q09:B (3.0) BS03 CA 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    177295 3q09:C (3.0) BS01 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    177296 3q09:C (3.0) BS02 CA 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    177297 3q09:D (3.0) BS01 CA 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    177298 3q09:D (3.0) BS02 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    177299 3q09:E (3.0) BS01 CA 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    177300 3q09:E (3.0) BS02 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    177301 3q09:F (3.0) BS01 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    177302 3q09:F (3.0) BS02 CA 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    177303 3q09:G (3.0) BS01 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    177304 3q09:G (3.0) BS02 CA 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    177305 3q09:H (3.0) BS01 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    177306 3q09:H (3.0) BS02 CA 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    177307 3q09:I (3.0) BS01 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    177308 3q09:I (3.0) BS02 CA 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    177309 3q09:J (3.0) BS01 CA 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    177310 3q09:J (3.0) BS02 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    177311 3q09:K (3.0) BS01 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    177312 3q09:K (3.0) BS02 CA 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    177313 3q09:L (3.0) BS01 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    177314 3q09:L (3.0) BS02 CA 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    177315 3q09:M (3.0) BS01 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    177316 3q09:M (3.0) BS02 CA 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    177317 3q09:N (3.0) BS01 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    177318 3q09:N (3.0) BS02 CA 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    177319 3q09:O (3.0) BS01 CA 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    177320 3q09:O (3.0) BS02 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    177321 3q09:O (3.0) BS03 NO2 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    177322 3q09:P (3.0) BS01 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    177323 3q09:P (3.0) BS02 CA 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    177324 3q09:Q (3.0) BS01 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    177325 3q09:Q (3.0) BS02 NO2 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    177326 3q09:Q (3.0) BS03 CA 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    177327 3q09:R (3.0) BS01 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    177328 3q09:R (3.0) BS02 NO2 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    177329 3q09:R (3.0) BS03 CA 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    177330 3q09:S (3.0) BS01 CA 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    177331 3q09:S (3.0) BS02 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    177332 3q09:S (3.0) BS03 NO2 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    177333 3q09:T (3.0) BS01 CA 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    177334 3q09:T (3.0) BS02 HEM 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    177335 3q09:T (3.0) BS03 NO2 1.13.11.49 GO:0016491 ... Q47CX0 20386942
    177336 3q0a:A (2.69) BS01 dna 2.7.7.6 N/A Q859P9 21321236
    177337 3q0a:A (2.69) BS02 GTP 2.7.7.6 N/A Q859P9 21321236
    177338 3q0a:B (2.69) BS01 dna 2.7.7.6 N/A Q859P9 21321236
    177339 3q0a:B (2.69) BS02 GTP 2.7.7.6 N/A Q859P9 21321236
    177340 3q0b:X (2.2) BS01 dna 2.1.1.-
    2.1.1.367
    N/A O82175 21245167
    177341 3q0c:A (2.6567) BS01 dna 2.1.1.-
    2.1.1.367
    N/A O82175 21245167
    177342 3q0c:A (2.6567) BS02 dna 2.1.1.-
    2.1.1.367
    N/A O82175 21245167
    177343 3q0c:X (2.6567) BS01 dna 2.1.1.-
    2.1.1.367
    N/A O82175 21245167
    177344 3q0c:X (2.6567) BS02 dna 2.1.1.-
    2.1.1.367
    N/A O82175 21245167
    177345 3q0d:A (2.3704) BS01 dna 2.1.1.-
    2.1.1.367
    N/A O82175 21245167
    177346 3q0d:A (2.3704) BS02 dna 2.1.1.-
    2.1.1.367
    N/A O82175 21245167
    177347 3q0d:X (2.3704) BS01 dna 2.1.1.-
    2.1.1.367
    N/A O82175 21245167
    177348 3q0d:X (2.3704) BS02 dna 2.1.1.-
    2.1.1.367
    N/A O82175 21245167
    177349 3q0e:A (1.8) BS01 CYS 1.2.1.11 GO:0004073 ... Q9KQG2 22039970
    177350 3q0e:B (1.8) BS01 CYS 1.2.1.11 GO:0004073 ... Q9KQG2 22039970
    177351 3q0f:A (2.75) BS01 dna 2.1.1.-
    2.1.1.367
    N/A O82175 21245167
    177352 3q0f:X (2.75) BS01 dna 2.1.1.-
    2.1.1.367
    N/A O82175 21245167
    177353 3q0g:C (2.38) BS01 COA 4.2.1.17 GO:0003824 ... P9WNN9 N/A
    177354 3q0g:D (2.38) BS01 BCO 4.2.1.17 GO:0003824 ... P9WNN9 N/A
    177355 3q0g:F (2.38) BS01 BCO 4.2.1.17 GO:0003824 ... P9WNN9 N/A
    177356 3q0j:C (2.4) BS01 CAA 4.2.1.17 GO:0003824 ... P9WNN9 N/A
    177357 3q0j:F (2.4) BS01 CAA 4.2.1.17 GO:0003824 ... P9WNN9 N/A
    177358 3q0k:A (2.6) BS01 CA ? N/A Q9UNF0 N/A
    177359 3q0k:B (2.6) BS01 CA ? N/A Q9UNF0 N/A
    177360 3q0k:C (2.6) BS01 CA ? N/A Q9UNF0 N/A
    177361 3q0k:D (2.6) BS01 CA ? N/A Q9UNF0 N/A
    177362 3q0l:A (2.503) BS01 rna ? GO:0003723 ... Q14671 21397187
    177363 3q0l:B (2.503) BS01 rna ? GO:0003723 ... Q14671 21397187
    177364 3q0m:A (2.705) BS01 rna ? GO:0003723 ... Q14671 21397187
    177365 3q0m:B (2.705) BS01 rna ? GO:0003723 ... Q14671 21397187
    177366 3q0n:A (2.4) BS01 rna ? GO:0003723 ... Q14671 21397187
    177367 3q0n:B (2.4) BS01 rna ? GO:0003723 ... Q14671 21397187
    177368 3q0o:A (2.804) BS01 rna ? GO:0003723 ... Q14671 21397187
    177369 3q0o:B (2.804) BS01 rna ? GO:0003723 ... Q14671 21397187
    177370 3q0p:A (2.6) BS01 rna ? GO:0003723 ... Q14671 21397187
    177371 3q0p:B (2.6) BS01 rna ? GO:0003723 ... Q14671 21397187
    177372 3q0q:A (2.0) BS01 rna ? GO:0003723 ... Q8TB72 21397187
    177373 3q0r:A (2.0) BS01 rna ? GO:0003723 ... Q8TB72 21397187
    177374 3q0s:A (2.0) BS01 rna ? GO:0003723 ... Q8TB72 21397187
    177375 3q0t:A (2.401) BS01 LGE 3.4.14.5 GO:0001618 ... P27487 N/A BindingDB: Ki=2.7nM
    177376 3q0t:B (2.401) BS01 LGE 3.4.14.5 GO:0001618 ... P27487 N/A BindingDB: Ki=2.7nM
    177377 3q0u:A (1.7) BS01 LL3 ? GO:0000976 ... P9WMC1 N/A BindingDB: IC50=5600nM
    177378 3q0v:A (1.95) BS01 LL4 ? GO:0000976 ... P9WMC1 N/A BindingDB: IC50=900nM
    177379 3q0v:B (1.95) BS01 LL4 ? GO:0000976 ... P9WMC1 N/A BindingDB: IC50=900nM
    177380 3q0w:A (1.6) BS01 LL5 ? GO:0000976 ... P9WMC1 22156370
    177381 3q0z:A (2.29) BS01 23E 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13
    GO:0003723 ... Q9WMX2 21486696
    177382 3q0z:B (2.29) BS01 23E 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13
    GO:0003723 ... Q9WMX2 21486696
    177383 3q10:A (1.83) BS01 AMP 6.3.2.1 GO:0004592 ... Q8ZBK7 N/A
    177384 3q10:B (1.83) BS01 AMP 6.3.2.1 GO:0004592 ... Q8ZBK7 N/A
    177385 3q10:C (1.83) BS01 AMP 6.3.2.1 GO:0004592 ... Q8ZBK7 N/A
    177386 3q10:D (1.83) BS01 AMP 6.3.2.1 GO:0004592 ... Q8ZBK7 N/A
    177387 3q11:A (1.8) BS01 NAP N/A GO:0004073 ... N/A 22039970
    177388 3q11:A (1.8) BS02 P4F N/A GO:0004073 ... N/A 22039970
    177389 3q11:B (1.8) BS01 NAP N/A GO:0004073 ... N/A 22039970
    177390 3q11:B (1.8) BS02 P4F N/A GO:0004073 ... N/A 22039970
    177391 3q12:A (1.58) BS01 PAF 6.3.2.1 GO:0004592 ... Q8ZBK7 N/A
    177392 3q12:B (1.58) BS01 PAF 6.3.2.1 GO:0004592 ... Q8ZBK7 N/A
    177393 3q12:C (1.58) BS01 PAF 6.3.2.1 GO:0004592 ... Q8ZBK7 N/A
    177394 3q12:D (1.58) BS01 PAF 6.3.2.1 GO:0004592 ... Q8ZBK7 N/A
    177395 3q13:A (1.95) BS01 CA ? N/A Q9HCB6 21569239
    177396 3q14:A (1.75) BS01 FE 1.14.13.236 GO:0016491 ... Q00456 22264099
    177397 3q14:A (1.75) BS02 FE 1.14.13.236 GO:0016491 ... Q00456 22264099
    177398 3q14:A (1.75) BS03 PCR 1.14.13.236 GO:0016491 ... Q00456 22264099
    177399 3q14:A (1.75) BS04 PCR 1.14.13.236 GO:0016491 ... Q00456 22264099
    177400 3q14:E (1.75) BS01 PCR 1.14.13.- GO:0004497 ... Q00459 22264099

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).