SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    181801 3red:K (3.03) BS01 FAD 4.1.2.10 GO:0016491 ... B9X0I1 N/A
    181802 3red:L (3.03) BS01 FAD 4.1.2.10 GO:0016491 ... B9X0I1 N/A
    181803 3ree:A (1.76) BS01 FES 2.6.1.3 GO:0010506 ... Q9NZ45 21591687
    181804 3ref:A (1.95) BS01 GDP 3.6.5.2 GO:0003924 ... P31021 21930699
    181805 3ref:A (1.95) BS02 MG 3.6.5.2 GO:0003924 ... P31021 21930699
    181806 3ref:B (1.95) BS01 GDP 3.6.5.2 GO:0003924 ... P31021 21930699
    181807 3ref:B (1.95) BS02 MG 3.6.5.2 GO:0003924 ... P31021 21930699
    181808 3reg:A (1.801) BS01 GSP 3.6.5.2 GO:0003924 ... P31021 21930699
    181809 3reg:A (1.801) BS02 MG 3.6.5.2 GO:0003924 ... P31021 21930699
    181810 3reg:B (1.801) BS01 GSP 3.6.5.2 GO:0003924 ... P31021 21930699
    181811 3reg:B (1.801) BS02 MG 3.6.5.2 GO:0003924 ... P31021 21930699
    181812 3reh:A (2.5) BS01 dna ? GO:0000786 ... P84233 21724603
    181813 3reh:A (2.5) BS02 dna ? GO:0000786 ... P84233 21724603
    181814 3reh:B (2.5) BS01 dna ? GO:0000786 ... P62799 21724603
    181815 3reh:B (2.5) BS02 dna ? GO:0000786 ... P62799 21724603
    181816 3reh:C (2.5) BS01 dna ? GO:0000786 ... P06897 21724603
    181817 3reh:C (2.5) BS02 dna ? GO:0000786 ... P06897 21724603
    181818 3reh:D (2.5) BS01 dna ? GO:0000786 ... P02281 21724603
    181819 3reh:D (2.5) BS02 dna ? GO:0000786 ... P02281 21724603
    181820 3reh:E (2.5) BS01 dna ? GO:0000786 ... P84233 21724603
    181821 3reh:E (2.5) BS02 dna ? GO:0000786 ... P84233 21724603
    181822 3reh:F (2.5) BS01 dna ? GO:0000786 ... P62799 21724603
    181823 3reh:F (2.5) BS02 dna ? GO:0000786 ... P62799 21724603
    181824 3reh:G (2.5) BS01 dna ? GO:0000786 ... P06897 21724603
    181825 3reh:G (2.5) BS02 dna ? GO:0000786 ... P06897 21724603
    181826 3reh:H (2.5) BS01 dna ? GO:0000786 ... P02281 21724603
    181827 3reh:H (2.5) BS02 dna ? GO:0000786 ... P02281 21724603
    181828 3rei:A (2.65) BS01 dna ? GO:0000786 ... P84233 21724603
    181829 3rei:A (2.65) BS02 dna ? GO:0000786 ... P84233 21724603
    181830 3rei:B (2.65) BS01 dna ? GO:0000786 ... P62799 21724603
    181831 3rei:B (2.65) BS02 dna ? GO:0000786 ... P62799 21724603
    181832 3rei:C (2.65) BS01 dna ? GO:0000786 ... P06897 21724603
    181833 3rei:C (2.65) BS02 dna ? GO:0000786 ... P06897 21724603
    181834 3rei:D (2.65) BS01 dna ? GO:0000786 ... P02281 21724603
    181835 3rei:D (2.65) BS02 dna ? GO:0000786 ... P02281 21724603
    181836 3rei:E (2.65) BS01 dna ? GO:0000786 ... P84233 21724603
    181837 3rei:E (2.65) BS02 dna ? GO:0000786 ... P84233 21724603
    181838 3rei:F (2.65) BS01 dna ? GO:0000786 ... P62799 21724603
    181839 3rei:F (2.65) BS02 dna ? GO:0000786 ... P62799 21724603
    181840 3rei:G (2.65) BS01 dna ? GO:0000786 ... P06897 21724603
    181841 3rei:G (2.65) BS02 dna ? GO:0000786 ... P06897 21724603
    181842 3rei:H (2.65) BS01 dna ? GO:0000786 ... P02281 21724603
    181843 3rei:H (2.65) BS02 dna ? GO:0000786 ... P02281 21724603
    181844 3rej:A (2.55) BS01 dna ? GO:0000786 ... P84233 21724603
    181845 3rej:A (2.55) BS02 dna ? GO:0000786 ... P84233 21724603
    181846 3rej:B (2.55) BS01 dna ? GO:0000786 ... P62799 21724603
    181847 3rej:B (2.55) BS02 dna ? GO:0000786 ... P62799 21724603
    181848 3rej:C (2.55) BS01 dna ? GO:0000786 ... P06897 21724603
    181849 3rej:C (2.55) BS02 dna ? GO:0000786 ... P06897 21724603
    181850 3rej:D (2.55) BS01 dna ? GO:0000786 ... P02281 21724603
    181851 3rej:D (2.55) BS02 dna ? GO:0000786 ... P02281 21724603
    181852 3rej:E (2.55) BS01 dna ? GO:0000786 ... P84233 21724603
    181853 3rej:E (2.55) BS02 dna ? GO:0000786 ... P84233 21724603
    181854 3rej:F (2.55) BS01 dna ? GO:0000786 ... P62799 21724603
    181855 3rej:F (2.55) BS02 dna ? GO:0000786 ... P62799 21724603
    181856 3rej:G (2.55) BS01 dna ? GO:0000786 ... P06897 21724603
    181857 3rej:G (2.55) BS02 dna ? GO:0000786 ... P06897 21724603
    181858 3rej:H (2.55) BS01 dna ? GO:0000786 ... P02281 21724603
    181859 3rej:H (2.55) BS02 dna ? GO:0000786 ... P02281 21724603
    181860 3rek:A (2.6) BS01 dna ? GO:0000786 ... P84233 21724603
    181861 3rek:A (2.6) BS02 dna ? GO:0000786 ... P84233 21724603
    181862 3rek:B (2.6) BS01 dna ? GO:0000786 ... P62799 21724603
    181863 3rek:B (2.6) BS02 dna ? GO:0000786 ... P62799 21724603
    181864 3rek:C (2.6) BS01 dna ? GO:0000786 ... P06897 21724603
    181865 3rek:C (2.6) BS02 dna ? GO:0000786 ... P06897 21724603
    181866 3rek:D (2.6) BS01 dna ? GO:0000786 ... P02281 21724603
    181867 3rek:D (2.6) BS02 dna ? GO:0000786 ... P02281 21724603
    181868 3rek:E (2.6) BS01 dna ? GO:0000786 ... P84233 21724603
    181869 3rek:E (2.6) BS02 dna ? GO:0000786 ... P84233 21724603
    181870 3rek:F (2.6) BS01 dna ? GO:0000786 ... P62799 21724603
    181871 3rek:F (2.6) BS02 dna ? GO:0000786 ... P62799 21724603
    181872 3rek:G (2.6) BS01 dna ? GO:0000786 ... P06897 21724603
    181873 3rek:G (2.6) BS02 dna ? GO:0000786 ... P06897 21724603
    181874 3rek:H (2.6) BS01 dna ? GO:0000786 ... P02281 21724603
    181875 3rek:H (2.6) BS02 dna ? GO:0000786 ... P02281 21724603
    181876 3rel:A (2.7) BS01 dna ? GO:0000786 ... P84233 21724603
    181877 3rel:A (2.7) BS02 dna ? GO:0000786 ... P84233 21724603
    181878 3rel:B (2.7) BS01 dna ? GO:0000786 ... P62799 21724603
    181879 3rel:B (2.7) BS02 dna ? GO:0000786 ... P62799 21724603
    181880 3rel:C (2.7) BS01 dna ? GO:0000786 ... P06897 21724603
    181881 3rel:C (2.7) BS02 dna ? GO:0000786 ... P06897 21724603
    181882 3rel:D (2.7) BS01 dna ? GO:0000786 ... P02281 21724603
    181883 3rel:D (2.7) BS02 dna ? GO:0000786 ... P02281 21724603
    181884 3rel:E (2.7) BS01 dna ? GO:0000786 ... P84233 21724603
    181885 3rel:E (2.7) BS02 dna ? GO:0000786 ... P84233 21724603
    181886 3rel:F (2.7) BS01 dna ? GO:0000786 ... P62799 21724603
    181887 3rel:F (2.7) BS02 dna ? GO:0000786 ... P62799 21724603
    181888 3rel:G (2.7) BS01 dna ? GO:0000786 ... P06897 21724603
    181889 3rel:G (2.7) BS02 dna ? GO:0000786 ... P06897 21724603
    181890 3rel:H (2.7) BS01 dna ? GO:0000786 ... P02281 21724603
    181891 3rel:H (2.7) BS02 dna ? GO:0000786 ... P02281 21724603
    181892 3rem:A (1.95) BS01 PYR 4.2.99.21
    5.4.99.5
    GO:0004106 ... Q51507 21751784
    181893 3rem:B (1.95) BS01 PYR 4.2.99.21
    5.4.99.5
    GO:0004106 ... Q51507 21751784
    181894 3reo:A (1.9) BS01 SAH 2.1.1.146 GO:0008168 ... O04385 N/A
    181895 3reo:B (1.9) BS01 EUG 2.1.1.146 GO:0008168 ... O04385 N/A
    181896 3reo:B (1.9) BS02 SAH 2.1.1.146 GO:0008168 ... O04385 N/A
    181897 3reo:C (1.9) BS01 EUG 2.1.1.146 GO:0008168 ... O04385 N/A
    181898 3reo:C (1.9) BS02 SAH 2.1.1.146 GO:0008168 ... O04385 N/A
    181899 3reo:D (1.9) BS01 EUG 2.1.1.146 GO:0008168 ... O04385 N/A
    181900 3reo:D (1.9) BS02 SAH 2.1.1.146 GO:0008168 ... O04385 N/A
    181901 3rep:A (1.8) BS01 ATP 2.7.11.1 GO:0004672 ... Q13418 N/A
    181902 3req:A (2.7) BS01 B12 5.4.99.2 GO:0003824 ... P11653 9655823
    181903 3req:A (2.7) BS02 ADN 5.4.99.2 GO:0003824 ... P11653 9655823
    181904 3rer:A (1.7) BS01 rna ? GO:0003723 ... P0A6X3 21979921
    181905 3rer:A (1.7) BS02 ADP ? GO:0003723 ... P0A6X3 21979921
    181906 3rer:B (1.7) BS01 rna ? GO:0003723 ... P0A6X3 21979921
    181907 3rer:B (1.7) BS02 ADP ? GO:0003723 ... P0A6X3 21979921
    181908 3rer:B (1.7) BS03 ADP ? GO:0003723 ... P0A6X3 21979921
    181909 3rer:C (1.7) BS01 rna ? GO:0003723 ... P0A6X3 21979921
    181910 3rer:C (1.7) BS02 ADP ? GO:0003723 ... P0A6X3 21979921
    181911 3rer:C (1.7) BS03 ADP ? GO:0003723 ... P0A6X3 21979921
    181912 3rer:D (1.7) BS01 rna ? GO:0003723 ... P0A6X3 21979921
    181913 3rer:D (1.7) BS02 ADP ? GO:0003723 ... P0A6X3 21979921
    181914 3rer:E (1.7) BS01 rna ? GO:0003723 ... P0A6X3 21979921
    181915 3rer:E (1.7) BS02 ADP ? GO:0003723 ... P0A6X3 21979921
    181916 3rer:F (1.7) BS01 rna ? GO:0003723 ... P0A6X3 21979921
    181917 3rer:F (1.7) BS02 ADP ? GO:0003723 ... P0A6X3 21979921
    181918 3rer:F (1.7) BS03 ADP ? GO:0003723 ... P0A6X3 21979921
    181919 3res:B (2.0) BS01 ADP ? GO:0003723 ... P0A6X3 21979921
    181920 3res:C (2.0) BS01 ADP ? GO:0003723 ... P0A6X3 21979921
    181921 3res:C (2.0) BS02 ADP ? GO:0003723 ... P0A6X3 21979921
    181922 3res:E (2.0) BS01 ADP ? GO:0003723 ... P0A6X3 21979921
    181923 3res:F (2.0) BS01 ADP ? GO:0003723 ... P0A6X3 21979921
    181924 3res:G (2.0) BS01 ADP ? GO:0003723 ... P0A6X3 21979921
    181925 3res:H (2.0) BS01 ADP ? GO:0003723 ... P0A6X3 21979921
    181926 3res:I (2.0) BS01 ADP ? GO:0003723 ... P0A6X3 21979921
    181927 3res:I (2.0) BS02 ADP ? GO:0003723 ... P0A6X3 21979921
    181928 3res:J (2.0) BS01 ADP ? GO:0003723 ... P0A6X3 21979921
    181929 3res:K (2.0) BS01 ADP ? GO:0003723 ... P0A6X3 21979921
    181930 3res:L (2.0) BS01 ADP ? GO:0003723 ... P0A6X3 21979921
    181931 3res:L (2.0) BS02 ADP ? GO:0003723 ... P0A6X3 21979921
    181932 3ret:B (1.79) BS01 PYR 4.2.99.21
    5.4.99.5
    GO:0004106 ... Q51507 21751784
    181933 3reu:A (1.9) BS01 MG ? GO:0000166 ... Q9V228 21820443
    181934 3reu:A (1.9) BS02 ATP ? GO:0000166 ... Q9V228 21820443
    181935 3reu:B (1.9) BS01 ASP ? GO:0000166 ... Q9V228 21820443
    181936 3reu:B (1.9) BS02 MG ? GO:0000166 ... Q9V228 21820443
    181937 3reu:B (1.9) BS03 ATP ? GO:0000166 ... Q9V228 21820443
    181938 3rew:A (1.9) BS01 peptide ? N/A P04439 22160697
    181939 3rew:D (1.9) BS01 peptide ? N/A P04439 22160697
    181940 3rex:A (1.8) BS01 AMP ? GO:0000166 ... Q9V228 21820443
    181941 3rex:B (1.8) BS01 AMP ? GO:0000166 ... Q9V228 21820443
    181942 3rey:A (3.309) BS01 XAC ? GO:0001609 ... P29274 21885291 BindingDB: Ki=63nM
    181943 3rf3:A (1.61) BS01 peptide ? GO:0003779 ... P18206 21525010
    181944 3rf3:A (1.61) BS02 peptide ? GO:0003779 ... P18206 21525010
    181945 3rf3:B (1.61) BS01 peptide ? GO:0003779 ... P18206 21525010
    181946 3rf3:B (1.61) BS02 peptide ? GO:0003779 ... P18206 21525010
    181947 3rf4:A (1.8) BS01 FUN ? GO:0005125 ... A4GRE3 21944748 MOAD: Ki=0.56uM
    181948 3rf4:A (1.8) BS02 ZN ? GO:0005125 ... A4GRE3 21944748
    181949 3rf4:B (1.8) BS01 FUN ? GO:0005125 ... A4GRE3 21944748 MOAD: Ki=0.56uM
    181950 3rf4:B (1.8) BS02 ZN ? GO:0005125 ... A4GRE3 21944748
    181951 3rf4:B (1.8) BS03 FUN ? GO:0005125 ... A4GRE3 21944748 MOAD: Ki=0.56uM
    181952 3rf4:C (1.8) BS01 FUN ? GO:0005125 ... A4GRE3 21944748 MOAD: Ki=0.56uM
    181953 3rf5:A (2.1) BS01 FUZ ? GO:0005125 ... A4GRE3 21944748 MOAD: Ki=2.37uM
    181954 3rf5:A (2.1) BS02 ZN ? GO:0005125 ... A4GRE3 21944748
    181955 3rf5:B (2.1) BS01 FUZ ? GO:0005125 ... A4GRE3 21944748 MOAD: Ki=2.37uM
    181956 3rf5:B (2.1) BS02 ZN ? GO:0005125 ... A4GRE3 21944748
    181957 3rf5:B (2.1) BS03 FUZ ? GO:0005125 ... A4GRE3 21944748 MOAD: Ki=2.37uM
    181958 3rf5:C (2.1) BS01 FUZ ? GO:0005125 ... A4GRE3 21944748 MOAD: Ki=2.37uM
    181959 3rf5:C (2.1) BS02 FUZ ? GO:0005125 ... A4GRE3 21944748 MOAD: Ki=2.37uM
    181960 3rf6:A (1.695) BS01 G3P 3.-.-.- GO:0003674 ... P36151 N/A
    181961 3rf6:A (1.695) BS02 MG 3.-.-.- GO:0003674 ... P36151 N/A
    181962 3rf6:A (1.695) BS03 MG 3.-.-.- GO:0003674 ... P36151 N/A
    181963 3rf6:B (1.695) BS01 MG 3.-.-.- GO:0003674 ... P36151 N/A
    181964 3rf6:B (1.695) BS02 G3P 3.-.-.- GO:0003674 ... P36151 N/A
    181965 3rf6:B (1.695) BS03 MG 3.-.-.- GO:0003674 ... P36151 N/A
    181966 3rf7:A (2.12) BS01 NAD ? GO:0004022 ... Q12MB1 N/A
    181967 3rf7:A (2.12) BS02 FE ? GO:0004022 ... Q12MB1 N/A
    181968 3rf9:A (2.2) BS01 SF4 2.1.1.192 GO:0000049 ... P36979 21527678
    181969 3rf9:B (2.2) BS01 SF4 2.1.1.192 GO:0000049 ... P36979 21527678
    181970 3rfa:A (2.05) BS01 SF4 2.1.1.192 GO:0000049 ... P36979 21527678
    181971 3rfa:A (2.05) BS02 SAM 2.1.1.192 GO:0000049 ... P36979 21527678
    181972 3rfa:B (2.05) BS01 SF4 2.1.1.192 GO:0000049 ... P36979 21527678
    181973 3rfa:B (2.05) BS02 SAM 2.1.1.192 GO:0000049 ... P36979 21527678
    181974 3rfb:A (2.3) BS01 SME 1.8.4.14 GO:0005829 ... Q8DQA6 N/A
    181975 3rfb:B (2.3) BS01 SME 1.8.4.14 GO:0005829 ... Q8DQA6 N/A
    181976 3rfc:A (2.1) BS01 ADP N/A GO:0005524 ... N/A N/A
    181977 3rfc:A (2.1) BS02 MG N/A GO:0005524 ... N/A N/A
    181978 3rfe:A (1.245) BS01 MG ? N/A P13224 21908432
    181979 3rfe:B (1.245) BS01 MG ? N/A P13224 21908432
    181980 3rfm:A (3.598) BS01 CFF ? GO:0001609 ... P29274 21885291 BindingDB: Ki=23400nM
    181981 3rfn:A (1.8) BS01 ZN ? GO:0000166 ... O58307 22061265
    181982 3rfr:A (2.68) BS01 CUA ? N/A Q9KX36 22013879
    181983 3rfr:C (2.68) BS01 peptide ? N/A Q9KX37 22013879
    181984 3rfr:C (2.68) BS02 ZN ? N/A Q9KX37 22013879
    181985 3rfr:C (2.68) BS03 ZN ? N/A Q9KX37 22013879
    181986 3rfr:E (2.68) BS01 CU ? N/A Q9KX36 22013879
    181987 3rfr:G (2.68) BS01 ZN ? N/A Q9KX37 22013879
    181988 3rfr:G (2.68) BS02 ZN ? N/A Q9KX37 22013879
    181989 3rfr:I (2.68) BS01 CU ? N/A Q9KX36 22013879
    181990 3rfr:K (2.68) BS01 ZN ? N/A Q9KX37 22013879
    181991 3rfu:A (3.2) BS01 ALF 7.2.2.8 GO:0000166 ... Q5ZWR1 21716286
    181992 3rfu:A (3.2) BS02 MG 7.2.2.8 GO:0000166 ... Q5ZWR1 21716286
    181993 3rfu:B (3.2) BS01 ALF 7.2.2.8 GO:0000166 ... Q5ZWR1 21716286
    181994 3rfu:B (3.2) BS02 MG 7.2.2.8 GO:0000166 ... Q5ZWR1 21716286
    181995 3rfu:C (3.2) BS01 ALF 7.2.2.8 GO:0000166 ... Q5ZWR1 21716286
    181996 3rfu:C (3.2) BS02 MG 7.2.2.8 GO:0000166 ... Q5ZWR1 21716286
    181997 3rfu:D (3.2) BS01 ALF 7.2.2.8 GO:0000166 ... Q5ZWR1 21716286
    181998 3rfu:D (3.2) BS02 MG 7.2.2.8 GO:0000166 ... Q5ZWR1 21716286
    181999 3rfv:A (2.1) BS01 NAI 1.1.1.203 GO:0050388 ... Q7CRQ0 21676870
    182000 3rfv:A (2.1) BS02 15L 1.1.1.203 GO:0050388 ... Q7CRQ0 21676870

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).