SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    183601 3rvd:H (2.7) BS02 NAD 1.2.1.13 GO:0006006 ... P25856 22514274
    183602 3rvd:O (2.7) BS01 peptide 1.2.1.13 GO:0006006 ... P25856 22514274
    183603 3rvd:O (2.7) BS02 NAD 1.2.1.13 GO:0006006 ... P25856 22514274
    183604 3rvd:Q (2.7) BS01 peptide 1.2.1.13 GO:0006006 ... P25856 22514274
    183605 3rvd:Q (2.7) BS02 NAD 1.2.1.13 GO:0006006 ... P25856 22514274
    183606 3rvf:A (3.1) BS01 peptide ? GO:0004879 ... Q96RI1 21890356
    183607 3rvf:A (3.1) BS02 034 ? GO:0004879 ... Q96RI1 21890356 BindingDB: EC50=110nM
    183608 3rvg:A (2.498) BS01 17P 2.7.10.2 GO:0004672 ... O60674 21942426 MOAD: ic50=5nM
    183609 3rvh:A (2.251) BS01 ZN 1.14.11.66
    1.14.11.69
    N/A O75164 N/A
    183610 3rvh:A (2.251) BS02 HQ2 1.14.11.66
    1.14.11.69
    N/A O75164 N/A
    183611 3rvh:B (2.251) BS01 ZN 1.14.11.66
    1.14.11.69
    N/A O75164 N/A
    183612 3rvh:B (2.251) BS02 HQ2 1.14.11.66
    1.14.11.69
    N/A O75164 N/A
    183613 3rvi:A (2.65) BS01 RVI 3.4.23.46 GO:0004190 ... P56817 21707077 BindingDB: IC50=11nM
    183614 3rvj:A (2.1) BS01 MN ? GO:0000156 ... P0AE67 25928369
    183615 3rvj:A (2.1) BS02 BEF ? GO:0000156 ... P0AE67 25928369
    183616 3rvj:B (2.1) BS01 MN ? GO:0000156 ... P0AE67 25928369
    183617 3rvj:B (2.1) BS02 BEF ? GO:0000156 ... P0AE67 25928369
    183618 3rvk:A (1.16) BS01 MN ? GO:0000156 ... P0AE67 25928369
    183619 3rvl:A (1.55) BS01 BEF ? GO:0000156 ... P0AE67 25928369
    183620 3rvl:A (1.55) BS02 MN ? GO:0000156 ... P0AE67 25928369
    183621 3rvl:B (1.55) BS01 BEF ? GO:0000156 ... P0AE67 25928369
    183622 3rvl:B (1.55) BS02 MN ? GO:0000156 ... P0AE67 25928369
    183623 3rvm:A (1.45) BS01 MN ? GO:0000156 ... P0AE67 25928369
    183624 3rvn:A (2.25) BS01 MN ? GO:0000156 ... P0AE67 25928369
    183625 3rvn:A (2.25) BS02 BEF ? GO:0000156 ... P0AE67 25928369
    183626 3rvn:B (2.25) BS01 MN ? GO:0000156 ... P0AE67 25928369
    183627 3rvn:B (2.25) BS02 BEF ? GO:0000156 ... P0AE67 25928369
    183628 3rvo:A (1.55) BS01 MN ? GO:0000156 ... P0AE67 25928369
    183629 3rvp:A (2.404) BS01 MN ? GO:0000156 ... P0AE67 25928369
    183630 3rvp:A (2.404) BS02 BEF ? GO:0000156 ... P0AE67 25928369
    183631 3rvp:B (2.404) BS01 MN ? GO:0000156 ... P0AE67 25928369
    183632 3rvp:B (2.404) BS02 BEF ? GO:0000156 ... P0AE67 25928369
    183633 3rvp:B (2.404) BS03 MG ? GO:0000156 ... P0AE67 25928369
    183634 3rvq:A (1.15) BS01 MN ? GO:0000156 ... P0AE67 25928369
    183635 3rvr:A (2.1) BS01 MN ? GO:0000156 ... P0AE67 25928369
    183636 3rvr:A (2.1) BS02 MOO ? GO:0000156 ... P0AE67 25928369
    183637 3rvr:B (2.1) BS01 MN ? GO:0000156 ... P0AE67 25928369
    183638 3rvr:B (2.1) BS02 MOO ? GO:0000156 ... P0AE67 25928369
    183639 3rvs:A (2.1) BS01 MN ? GO:0000156 ... P0AE67 25928369
    183640 3rvs:A (2.1) BS02 WO4 ? GO:0000156 ... P0AE67 25928369
    183641 3rvs:B (2.1) BS01 MN ? GO:0000156 ... P0AE67 25928369
    183642 3rvs:B (2.1) BS02 WO4 ? GO:0000156 ... P0AE67 25928369
    183643 3rw6:A (2.3) BS01 rna ? GO:0003676 ... Q9UBU9 21822283
    183644 3rw6:B (2.3) BS01 rna ? GO:0003676 ... Q9UBU9 21822283
    183645 3rw9:A (2.0) BS01 DSH 2.5.1.16 GO:0003824 ... P19623 21898642 MOAD: Kd=1.1uM
    183646 3rw9:B (2.0) BS01 DSH 2.5.1.16 GO:0003824 ... P19623 21898642 MOAD: Kd=1.1uM
    183647 3rwb:A (1.699) BS01 NAD 1.1.1.107 GO:0042820 ... Q988B7 N/A
    183648 3rwb:A (1.699) BS02 4PL 1.1.1.107 GO:0042820 ... Q988B7 N/A
    183649 3rwb:B (1.699) BS01 NAD 1.1.1.107 GO:0042820 ... Q988B7 N/A
    183650 3rwb:B (1.699) BS02 4PL 1.1.1.107 GO:0042820 ... Q988B7 N/A
    183651 3rwb:C (1.699) BS01 NAD 1.1.1.107 GO:0042820 ... Q988B7 N/A
    183652 3rwb:C (1.699) BS02 4PL 1.1.1.107 GO:0042820 ... Q988B7 N/A
    183653 3rwb:D (1.699) BS01 NAD 1.1.1.107 GO:0042820 ... Q988B7 N/A
    183654 3rwb:D (1.699) BS02 4PL 1.1.1.107 GO:0042820 ... Q988B7 N/A
    183655 3rwc:A (2.502) BS01 peptide ? N/A Q9GJ77 22084443
    183656 3rwc:D (2.502) BS01 peptide ? N/A Q9GJ77 22084443
    183657 3rwd:A (2.602) BS01 peptide ? N/A Q9GJ77 22084443
    183658 3rwd:D (2.602) BS01 peptide ? N/A Q9GJ77 22084443
    183659 3rwe:A (2.4) BS01 peptide ? N/A Q9GJ77 22084443
    183660 3rwf:A (2.6) BS01 peptide ? N/A Q9GJ77 22084443
    183661 3rwg:A (2.1) BS01 peptide ? N/A Q9GJ77 22084443
    183662 3rwh:A (2.6) BS01 peptide ? N/A Q9GJ77 22084443
    183663 3rwh:D (2.6) BS01 peptide ? N/A Q9GJ77 22084443
    183664 3rwi:A (2.009) BS01 peptide ? N/A Q9GJ77 22084443
    183665 3rwj:A (2.7) BS01 peptide ? N/A Q9GJ77 22084443
    183666 3rwk:X (2.1) BS01 MAN 3.2.1.7 GO:0004553 ... O94220 22750808
    183667 3rwk:X (2.1) BS02 MAN 3.2.1.7 GO:0004553 ... O94220 22750808
    183668 3rwk:X (2.1) BS03 MAN 3.2.1.7 GO:0004553 ... O94220 22750808
    183669 3rwk:X (2.1) BS04 FRU 3.2.1.7 GO:0004553 ... O94220 22750808
    183670 3rwk:X (2.1) BS05 FRU 3.2.1.7 GO:0004553 ... O94220 22750808
    183671 3rwl:A (2.0) BS01 HEM 1.14.15.3 GO:0004497 ... Q5F4D9 22430002
    183672 3rwm:B (2.0) BS01 GNP ? GO:0003924 ... P51996 22024479
    183673 3rwm:B (2.0) BS02 MG ? GO:0003924 ... P51996 22024479
    183674 3rwm:B (2.0) BS03 GNP ? GO:0003924 ... P51996 22024479
    183675 3rwn:A (1.0) BS01 GLU ? N/A Q716G6 21705802
    183676 3rwn:A (1.0) BS02 GLU ? N/A Q716G6 21705802
    183677 3rwn:B (1.0) BS01 GLU ? N/A Q716G6 21705802
    183678 3rwn:B (1.0) BS02 GLU ? N/A Q716G6 21705802
    183679 3rwn:C (1.0) BS01 GLU ? N/A Q716G6 21705802
    183680 3rwn:C (1.0) BS02 GLU ? N/A Q716G6 21705802
    183681 3rwo:A (1.7) BS01 GDP ? GO:0003924 ... P51996 22024479
    183682 3rwo:B (1.7) BS01 GDP ? GO:0003924 ... P51996 22024479
    183683 3rwp:A (1.92) BS01 ABQ 2.7.11.1 GO:0004672 ... O15530 22040023 MOAD: Ki=0.6nM
    BindingDB: Ki=0.600000nM
    183684 3rwq:A (2.55) BS01 3RW 2.7.11.1 GO:0004672 ... O15530 22040023 BindingDB: Ki=35nM
    183685 3rwr:J (3.943) BS01 TBR ? GO:0003677 ... Q13426 N/A
    183686 3rwr:M (3.943) BS01 TBR ? GO:0005634 ... Q9H9Q4 N/A
    183687 3rwr:X (3.943) BS01 TBR ? GO:0005634 ... Q9H9Q4 N/A
    183688 3rwr:Y (3.943) BS01 TBR ? GO:0003677 ... Q13426 N/A
    183689 3rwu:A (2.33) BS01 dna 2.7.7.7
    3.1.11.-
    GO:0000166 ... Q38087 21667997
    183690 3rwu:A (2.33) BS02 dna 2.7.7.7
    3.1.11.-
    GO:0000166 ... Q38087 21667997
    183691 3rwu:A (2.33) BS03 ATP 2.7.7.7
    3.1.11.-
    GO:0000166 ... Q38087 21667997
    183692 3rwu:A (2.33) BS04 CA 2.7.7.7
    3.1.11.-
    GO:0000166 ... Q38087 21667997
    183693 3rwu:A (2.33) BS05 CA 2.7.7.7
    3.1.11.-
    GO:0000166 ... Q38087 21667997
    183694 3rwu:A (2.33) BS06 CA 2.7.7.7
    3.1.11.-
    GO:0000166 ... Q38087 21667997
    183695 3rx2:A (1.9) BS01 NAP 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54
    GO:0001523 ... P15121 22155003
    183696 3rx2:A (1.9) BS02 SLO 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54
    GO:0001523 ... P15121 22155003
    183697 3rx3:A (1.9) BS01 NAP 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54
    GO:0001523 ... P15121 22155003
    183698 3rx3:A (1.9) BS02 SUZ 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54
    GO:0001523 ... P15121 22155003
    183699 3rx4:A (2.0) BS01 NAP 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54
    GO:0001523 ... P15121 22155003
    183700 3rx4:A (2.0) BS02 SFI 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54
    GO:0001523 ... P15121 22155003
    183701 3rx5:A (1.99) BS01 BGC 3.2.1.4 GO:0004553 ... Q9AJS0 21785782
    183702 3rx5:A (1.99) BS02 CA 3.2.1.4 GO:0004553 ... Q9AJS0 21785782
    183703 3rx5:A (1.99) BS03 ZN 3.2.1.4 GO:0004553 ... Q9AJS0 21785782
    183704 3rx5:A (1.99) BS04 G2I 3.2.1.4 GO:0004553 ... Q9AJS0 21785782
    183705 3rx7:A (2.02) BS01 CA 3.2.1.4 GO:0004553 ... Q9AJS0 21785782
    183706 3rx7:A (2.02) BS02 ZN 3.2.1.4 GO:0004553 ... Q9AJS0 21785782
    183707 3rx7:A (2.02) BS03 G3I 3.2.1.4 GO:0004553 ... Q9AJS0 21785782
    183708 3rx7:A (2.02) BS04 9MR 3.2.1.4 GO:0004553 ... Q9AJS0 21785782
    183709 3rx8:A (2.56) BS01 CA 3.2.1.4 GO:0004553 ... Q9AJS0 21785782
    183710 3rx8:A (2.56) BS02 ZN 3.2.1.4 GO:0004553 ... Q9AJS0 21785782
    183711 3rx8:A (2.56) BS03 9MR 3.2.1.4 GO:0004553 ... Q9AJS0 21785782
    183712 3rx8:A (2.56) BS04 9MR 3.2.1.4 GO:0004553 ... Q9AJS0 21785782
    183713 3rxa:A (1.7) BS01 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    183714 3rxa:A (1.7) BS02 SZ1 3.4.21.4 GO:0004175 ... P00760 N/A
    183715 3rxb:A (1.7) BS01 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    183716 3rxb:A (1.7) BS02 ALG 3.4.21.4 GO:0004175 ... P00760 N/A
    183717 3rxc:A (1.7) BS01 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    183718 3rxc:A (1.7) BS02 2AP 3.4.21.4 GO:0004175 ... P00760 N/A
    183719 3rxd:A (1.7) BS01 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    183720 3rxd:A (1.7) BS02 SZ4 3.4.21.4 GO:0004175 ... P00760 N/A
    183721 3rxe:A (1.7) BS01 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    183722 3rxf:A (1.7) BS01 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    183723 3rxg:A (1.7) BS01 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    183724 3rxg:A (1.7) BS02 SZ3 3.4.21.4 GO:0004175 ... P00760 N/A
    183725 3rxh:A (1.7) BS01 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    183726 3rxh:A (1.7) BS02 HSM 3.4.21.4 GO:0004175 ... P00760 N/A
    183727 3rxi:A (1.6) BS01 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    183728 3rxi:A (1.6) BS02 TSS 3.4.21.4 GO:0004175 ... P00760 N/A
    183729 3rxj:A (1.7) BS01 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    183730 3rxj:A (1.7) BS02 GBS 3.4.21.4 GO:0004175 ... P00760 N/A
    183731 3rxk:A (1.6) BS01 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    183732 3rxk:A (1.6) BS02 SZ8 3.4.21.4 GO:0004175 ... P00760 N/A
    183733 3rxl:A (1.7) BS01 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    183734 3rxl:A (1.7) BS02 SZ9 3.4.21.4 GO:0004175 ... P00760 N/A
    183735 3rxm:A (1.7) BS01 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    183736 3rxm:A (1.7) BS02 SW1 3.4.21.4 GO:0004175 ... P00760 N/A
    183737 3rxo:A (1.6) BS01 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    183738 3rxo:A (1.6) BS02 SW2 3.4.21.4 GO:0004175 ... P00760 N/A
    183739 3rxp:A (1.6) BS01 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    183740 3rxp:A (1.6) BS02 SW3 3.4.21.4 GO:0004175 ... P00760 N/A
    183741 3rxq:A (1.68) BS01 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    183742 3rxr:A (1.72) BS01 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    183743 3rxr:A (1.72) BS02 SZ1 3.4.21.4 GO:0004175 ... P00760 N/A
    183744 3rxs:A (1.74) BS01 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    183745 3rxs:A (1.74) BS02 SZ4 3.4.21.4 GO:0004175 ... P00760 N/A
    183746 3rxt:A (1.7) BS01 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    183747 3rxt:A (1.7) BS02 SZ4 3.4.21.4 GO:0004175 ... P00760 N/A
    183748 3rxu:A (1.68) BS01 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    183749 3rxv:A (1.7) BS01 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    183750 3rxw:A (1.26) BS01 SR3 3.5.2.6 GO:0005829 ... Q9F663 22330909
    183751 3rxx:A (1.62) BS01 NPB 3.5.2.6 GO:0005829 ... Q9F663 22330909
    183752 3rxz:A (2.01) BS01 ZN ? GO:0005975 ... A0R0G0 N/A
    183753 3rxz:B (2.01) BS01 ZN ? GO:0005975 ... A0R0G0 N/A
    183754 3rxz:C (2.01) BS01 ZN ? GO:0005975 ... A0R0G0 N/A
    183755 3rxz:D (2.01) BS01 ZN ? GO:0005975 ... A0R0G0 N/A
    183756 3ry2:A (0.95) BS01 BTN ? GO:0009374 ... P22629 21904034 BindingDB: Kd=1.000000nM
    183757 3ry2:B (0.95) BS01 BTN ? GO:0009374 ... P22629 21904034 BindingDB: Kd=1.000000nM
    183758 3ry6:A (3.8) BS01 SIA ? N/A P01857 21856937
    183759 3ry6:B (3.8) BS01 GAL ? N/A P01857 21856937
    183760 3ry6:B (3.8) BS02 SIA ? N/A P01857 21856937
    183761 3ry8:A (1.4) BS01 FLC ? N/A Q5F4T5 22031945 MOAD: Kd=460uM
    183762 3ry9:A (1.95) BS01 1CA N/A N/A N/A 21698144
    183763 3ry9:B (1.95) BS01 1CA N/A N/A N/A 21698144
    183764 3rya:A (2.9) BS01 peptide ? GO:0005886 ... A2RJ53 21665971
    183765 3ryb:A (1.5) BS01 peptide ? GO:0005886 ... A2RJ53 21665971
    183766 3ryc:A (2.1) BS01 GTP ? GO:0000226 ... D0VWZ0 21787788
    183767 3ryc:B (2.1) BS01 GDP ? GO:0003924 ... D0VWY9 21787788
    183768 3ryc:C (2.1) BS01 GTP ? GO:0000226 ... D0VWZ0 21787788
    183769 3ryc:D (2.1) BS01 GTP ? GO:0003924 ... D0VWY9 21787788
    183770 3ryd:A (2.37) BS01 CA N/A N/A N/A 22197784
    183771 3ryd:A (2.37) BS02 CA N/A N/A N/A 22197784
    183772 3ryd:C (2.37) BS01 CA N/A N/A N/A 22197784
    183773 3rye:A (2.1) BS01 UNR 2.5.1.1
    2.5.1.10
    GO:0004659 ... P14324 N/A BindingDB: Ki=3.9nM, IC50=19.6nM
    183774 3rye:A (2.1) BS02 MG 2.5.1.1
    2.5.1.10
    GO:0004659 ... P14324 N/A
    183775 3rye:A (2.1) BS03 MG 2.5.1.1
    2.5.1.10
    GO:0004659 ... P14324 N/A
    183776 3ryf:A (2.52) BS01 GTP ? GO:0000226 ... D0VWZ0 21787788
    183777 3ryf:B (2.52) BS01 GTP ? GO:0003924 ... D0VWY9 21787788
    183778 3ryf:C (2.52) BS01 GTP ? GO:0000226 ... D0VWZ0 21787788
    183779 3ryf:D (2.52) BS01 GTP ? GO:0003924 ... D0VWY9 21787788
    183780 3ryg:A (1.75) BS01 FE ? GO:0009055 ... P24297 22194331
    183781 3ryh:A (2.8) BS01 GTP ? GO:0000226 ... D0VWZ0 21787788
    183782 3ryh:B (2.8) BS01 G2P ? GO:0003924 ... D0VWY9 21787788
    183783 3ryh:C (2.8) BS01 GTP ? GO:0000226 ... D0VWZ0 21787788
    183784 3ryh:D (2.8) BS01 G2P ? GO:0003924 ... D0VWY9 21787788
    183785 3ryi:A (2.4) BS01 GTP ? GO:0000226 ... D0VWZ0 21787788
    183786 3ryi:B (2.4) BS01 GDP ? GO:0003924 ... D0VWY9 21787788
    183787 3ryi:C (2.4) BS01 GTP ? GO:0000226 ... D0VWZ0 21787788
    183788 3ryi:D (2.4) BS01 GDP ? GO:0003924 ... D0VWY9 21787788
    183789 3ryj:B (1.39) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 21790183
    183790 3ryj:B (1.39) BS02 RYJ 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 21790183 MOAD: Kd=16nM
    183791 3ryk:A (1.631) BS01 POP 5.1.3.13 GO:0000271 ... A0A6L7H6N0 29199987
    183792 3ryk:A (1.631) BS02 TYD 5.1.3.13 GO:0000271 ... A0A6L7H6N0 29199987
    183793 3ryk:B (1.631) BS01 TYD 5.1.3.13 GO:0000271 ... A0A6L7H6N0 29199987
    183794 3rym:A (1.7039) BS01 ZN ? GO:0005507 ... P22364 22071089
    183795 3rym:A (1.7039) BS02 ZN ? GO:0005507 ... P22364 22071089
    183796 3rym:B (1.7039) BS01 ZN ? GO:0005507 ... P22364 22071089
    183797 3rym:B (1.7039) BS02 ZN ? GO:0005507 ... P22364 22071089
    183798 3rym:C (1.7039) BS01 ZN ? GO:0005507 ... P22364 22071089
    183799 3rym:C (1.7039) BS02 ZN ? GO:0005507 ... P22364 22071089
    183800 3rym:D (1.7039) BS01 ZN ? GO:0005507 ... P22364 22071089

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).