SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    185601 3sh8:B (2.0) BS01 CED 3.5.2.6 GO:0005886 ... P00808 21705325
    185602 3sh9:A (1.9) BS01 CEF 3.5.2.6 GO:0005886 ... P00808 21705325
    185603 3sh9:A (1.9) BS02 BB0 3.5.2.6 GO:0005886 ... P00808 21705325
    185604 3sh9:B (1.9) BS01 CEF 3.5.2.6 GO:0005886 ... P00808 21705325
    185605 3sh9:B (1.9) BS02 BB0 3.5.2.6 GO:0005886 ... P00808 21705325
    185606 3sha:H (1.52) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 22366545
    185607 3sha:H (1.52) BS02 peptide 3.4.21.5 GO:0004252 ... P00734 22366545
    185608 3sha:H (1.52) BS03 P97 3.4.21.5 GO:0004252 ... P00734 22366545 MOAD: Ki=2.6uM
    185609 3shb:A (1.8) BS01 peptide 2.3.2.27 N/A Q96T88 21808300
    185610 3shb:A (1.8) BS02 ZN 2.3.2.27 N/A Q96T88 21808300
    185611 3shb:A (1.8) BS03 ZN 2.3.2.27 N/A Q96T88 21808300
    185612 3shb:A (1.8) BS04 ZN 2.3.2.27 N/A Q96T88 21808300
    185613 3shb:A (1.8) BS05 ZN 2.3.2.27 N/A Q96T88 21808300
    185614 3shc:H (1.9) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 22366545
    185615 3shc:H (1.9) BS02 peptide 3.4.21.5 GO:0004252 ... P00734 22366545
    185616 3shc:H (1.9) BS03 B01 3.4.21.5 GO:0004252 ... P00734 22366545 MOAD: Ki=1.9uM
    185617 3shd:A (2.5) BS01 MN 3.6.1.- GO:0004787 ... A1AA28 N/A
    185618 3shd:B (2.5) BS01 MN 3.6.1.- GO:0004787 ... A1AA28 N/A
    185619 3shd:C (2.5) BS01 MN 3.6.1.- GO:0004787 ... A1AA28 N/A
    185620 3shd:D (2.5) BS01 MN 3.6.1.- GO:0004787 ... A1AA28 N/A
    185621 3shd:E (2.5) BS01 MN 3.6.1.- GO:0004787 ... A1AA28 N/A
    185622 3shd:F (2.5) BS01 MN 3.6.1.- GO:0004787 ... A1AA28 N/A
    185623 3shd:G (2.5) BS01 MN 3.6.1.- GO:0004787 ... A1AA28 N/A
    185624 3shd:H (2.5) BS01 MN 3.6.1.- GO:0004787 ... A1AA28 N/A
    185625 3shd:I (2.5) BS01 MN 3.6.1.- GO:0004787 ... A1AA28 N/A
    185626 3shd:J (2.5) BS01 MN 3.6.1.- GO:0004787 ... A1AA28 N/A
    185627 3shd:K (2.5) BS01 MN 3.6.1.- GO:0004787 ... A1AA28 N/A
    185628 3shd:L (2.5) BS01 MN 3.6.1.- GO:0004787 ... A1AA28 N/A
    185629 3she:A (2.25) BS01 I85 2.7.11.1 GO:0004672 ... Q16644 22119462
    185630 3shf:A (3.55) BS01 ADP ? GO:0001666 ... O88879 21827944
    185631 3shf:A (3.55) BS02 GBL ? GO:0001666 ... O88879 21827944
    185632 3shi:A (2.2) BS01 ZN 3.4.24.7 GO:0004222 ... P03956 21945315
    185633 3shi:A (2.2) BS02 ZN 3.4.24.7 GO:0004222 ... P03956 21945315
    185634 3shi:A (2.2) BS03 CA 3.4.24.7 GO:0004222 ... P03956 21945315
    185635 3shi:A (2.2) BS04 CA 3.4.24.7 GO:0004222 ... P03956 21945315
    185636 3shi:A (2.2) BS05 CA 3.4.24.7 GO:0004222 ... P03956 21945315
    185637 3shi:G (2.2) BS01 ZN 3.4.24.7 GO:0004222 ... P03956 21945315
    185638 3shi:G (2.2) BS02 ZN 3.4.24.7 GO:0004222 ... P03956 21945315
    185639 3shi:G (2.2) BS03 CA 3.4.24.7 GO:0004222 ... P03956 21945315
    185640 3shi:G (2.2) BS04 CA 3.4.24.7 GO:0004222 ... P03956 21945315
    185641 3shi:G (2.2) BS05 CA 3.4.24.7 GO:0004222 ... P03956 21945315
    185642 3shi:M (2.2) BS01 ZN 3.4.24.7 GO:0004222 ... P03956 21945315
    185643 3shi:M (2.2) BS02 ZN 3.4.24.7 GO:0004222 ... P03956 21945315
    185644 3shi:M (2.2) BS03 CA 3.4.24.7 GO:0004222 ... P03956 21945315
    185645 3shi:M (2.2) BS04 CA 3.4.24.7 GO:0004222 ... P03956 21945315
    185646 3shi:M (2.2) BS05 CA 3.4.24.7 GO:0004222 ... P03956 21945315
    185647 3shj:K (2.8) BS01 H10 3.4.25.1 GO:0004298 ... P30656 22105886
    185648 3shj:L (2.8) BS01 H10 3.4.25.1 GO:0003674 ... P23724 22105886
    185649 3shj:Y (2.8) BS01 H10 3.4.25.1 GO:0004298 ... P30656 22105886
    185650 3shj:Z (2.8) BS01 H10 3.4.25.1 GO:0003674 ... P23724 22105886
    185651 3shl:A (1.48) BS01 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    185652 3shl:A (1.48) BS02 CA 3.1.31.1 GO:0003676 ... P00644 N/A
    185653 3shq:A (1.96) BS01 MG 3.1.3.16 GO:0004721 ... Q9XZ16 21949367
    185654 3shr:A (2.5) BS01 CMP 2.7.11.12 GO:0001932 ... P00516 21893290
    185655 3shr:B (2.5) BS01 CMP 2.7.11.12 GO:0001932 ... P00516 21893290
    185656 3shv:A (2.1) BS01 peptide ? N/A Q8NEM0 22154951
    185657 3shv:B (2.1) BS01 peptide ? N/A Q8NEM0 22154951
    185658 3shw:A (2.9) BS01 peptide ? GO:0005923 ... Q07157 N/A
    185659 3shx:A (1.35) BS01 MG 1.16.3.1 GO:0004322 ... P07798 N/A
    185660 3shx:A (1.35) BS02 MG 1.16.3.1 GO:0004322 ... P07798 N/A
    185661 3shy:A (2.647) BS01 5FO 3.1.4.35 GO:0004114 ... O76074 21714539 BindingDB: Kd=1700nM
    185662 3shy:A (2.647) BS02 ZN 3.1.4.35 GO:0004114 ... O76074 21714539
    185663 3shy:A (2.647) BS03 MG 3.1.4.35 GO:0004114 ... O76074 21714539
    185664 3shz:A (2.449) BS01 5CO 3.1.4.35 GO:0004114 ... O76074 21714539 MOAD: ic50=35.9nM
    BindingDB: Kd=770nM
    185665 3shz:A (2.449) BS02 ZN 3.1.4.35 GO:0004114 ... O76074 21714539
    185666 3si0:A (2.1) BS01 ZN 2.3.2.5 GO:0005515 ... Q16769 21671571
    185667 3si1:A (2.9) BS01 ZN 2.3.2.5 GO:0005576 ... Q9CYK2 21671571
    185668 3si2:A (1.8) BS01 ZN 2.3.2.5 GO:0005576 ... Q9CYK2 21671571
    185669 3si2:A (1.8) BS02 PBD 2.3.2.5 GO:0005576 ... Q9CYK2 21671571 MOAD: ic50=3nM
    185670 3si3:H (1.55) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 22366545
    185671 3si3:H (1.55) BS02 peptide 3.4.21.5 GO:0004252 ... P00734 22366545
    185672 3si3:H (1.55) BS03 B03 3.4.21.5 GO:0004252 ... P00734 22366545 MOAD: Ki=69.3uM
    185673 3si4:H (1.27) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 22366545
    185674 3si4:H (1.27) BS02 peptide 3.4.21.5 GO:0004252 ... P00734 22366545
    185675 3si4:H (1.27) BS03 B04 3.4.21.5 GO:0004252 ... P00734 22366545 MOAD: Ki=132.2uM
    185676 3si5:A (2.2) BS01 peptide 2.7.11.1 GO:0007094 ... O60566 22000412
    185677 3si5:B (2.2) BS01 peptide 2.7.11.1 GO:0007094 ... O60566 22000412
    185678 3si6:A (1.85) BS01 dna 2.7.7.7
    3.1.11.-
    GO:0000166 ... Q38087 21923197
    185679 3si6:A (1.85) BS02 dna 2.7.7.7
    3.1.11.-
    GO:0000166 ... Q38087 21923197
    185680 3si6:A (1.85) BS03 DUP 2.7.7.7
    3.1.11.-
    GO:0000166 ... Q38087 21923197
    185681 3si6:A (1.85) BS04 MG 2.7.7.7
    3.1.11.-
    GO:0000166 ... Q38087 21923197
    185682 3si7:A (2.25) BS01 ATP 5.6.1.6 GO:0005524 ... P26361 22265409
    185683 3si7:A (2.25) BS02 MG 5.6.1.6 GO:0005524 ... P26361 22265409
    185684 3si7:A (2.25) BS03 MG 5.6.1.6 GO:0005524 ... P26361 22265409
    185685 3si7:B (2.25) BS01 ATP 5.6.1.6 GO:0005524 ... P26361 22265409
    185686 3si7:B (2.25) BS02 MG 5.6.1.6 GO:0005524 ... P26361 22265409
    185687 3si7:B (2.25) BS03 MG 5.6.1.6 GO:0005524 ... P26361 22265409
    185688 3si7:C (2.25) BS01 ATP 5.6.1.6 GO:0005524 ... P26361 22265409
    185689 3si7:C (2.25) BS02 MG 5.6.1.6 GO:0005524 ... P26361 22265409
    185690 3si7:C (2.25) BS03 MG 5.6.1.6 GO:0005524 ... P26361 22265409
    185691 3si7:D (2.25) BS01 ATP 5.6.1.6 GO:0005524 ... P26361 22265409
    185692 3si7:D (2.25) BS02 MG 5.6.1.6 GO:0005524 ... P26361 22265409
    185693 3si7:D (2.25) BS03 MG 5.6.1.6 GO:0005524 ... P26361 22265409
    185694 3si8:A (2.15) BS01 dna 2.7.7.7 GO:0003684 ... Q9Y253 20577208
    185695 3si8:A (2.15) BS02 dna 2.7.7.7 GO:0003684 ... Q9Y253 20577208
    185696 3si8:A (2.15) BS03 DZ4 2.7.7.7 GO:0003684 ... Q9Y253 20577208
    185697 3si8:A (2.15) BS04 3D1 2.7.7.7 GO:0003684 ... Q9Y253 20577208
    185698 3si8:A (2.15) BS05 MG 2.7.7.7 GO:0003684 ... Q9Y253 20577208
    185699 3si8:A (2.15) BS06 MG 2.7.7.7 GO:0003684 ... Q9Y253 20577208
    185700 3si8:A (2.15) BS07 CO 2.7.7.7 GO:0003684 ... Q9Y253 20577208
    185701 3sia:A (2.05) BS01 CA ? GO:0005509 ... Q9GSV7 N/A
    185702 3sia:A (2.05) BS02 CA ? GO:0005509 ... Q9GSV7 N/A
    185703 3sib:A (1.9) BS01 CA ? GO:0005509 ... Q9GSV7 N/A
    185704 3sib:A (1.9) BS02 CA ? GO:0005509 ... Q9GSV7 N/A
    185705 3sic:E (1.8) BS01 CA 3.4.21.62 GO:0004252 ... P00782 1891457
    185706 3sic:E (1.8) BS02 CA 3.4.21.62 GO:0004252 ... P00782 1891457
    185707 3sid:A (1.4) BS01 FE ? GO:0008199 ... P48329 21872605
    185708 3sid:A (1.4) BS02 FE ? GO:0008199 ... P48329 21872605
    185709 3sid:A (1.4) BS03 AZI ? GO:0008199 ... P48329 21872605
    185710 3sid:B (1.4) BS01 FE ? GO:0008199 ... P48329 21872605
    185711 3sid:B (1.4) BS02 FE ? GO:0008199 ... P48329 21872605
    185712 3sid:B (1.4) BS03 AZI ? GO:0008199 ... P48329 21872605
    185713 3sie:A (1.93) BS01 5BO 3.1.4.35 GO:0004114 ... O76074 21714539 MOAD: ic50=13.3nM
    BindingDB: Kd=420nM
    185714 3sie:B (1.93) BS01 5BO 3.1.4.35 GO:0004114 ... O76074 21714539 MOAD: ic50=13.3nM
    BindingDB: Kd=420nM
    185715 3sig:A (1.28) BS01 AR6 3.2.1.143 N/A D1AC29 21892188
    185716 3sii:A (1.48) BS01 A1R 3.2.1.143 N/A D1AC29 21892188
    185717 3sik:A (2.149) BS01 HEM ? N/A A0A6L8PY92 22412371
    185718 3sik:B (2.149) BS01 HEM ? N/A A0A6L8PY92 22412371
    185719 3sio:A (2.32) BS01 MLK ? GO:0004888 ... Q8WSF8 22009746
    185720 3sio:A (2.32) BS02 MLK ? GO:0004888 ... Q8WSF8 22009746
    185721 3sio:B (2.32) BS01 MLK ? GO:0004888 ... Q8WSF8 22009746
    185722 3sio:B (2.32) BS02 MLK ? GO:0004888 ... Q8WSF8 22009746
    185723 3sio:C (2.32) BS01 MLK ? GO:0004888 ... Q8WSF8 22009746
    185724 3sio:C (2.32) BS02 MLK ? GO:0004888 ... Q8WSF8 22009746
    185725 3sio:D (2.32) BS01 MLK ? GO:0004888 ... Q8WSF8 22009746
    185726 3sio:D (2.32) BS02 MLK ? GO:0004888 ... Q8WSF8 22009746
    185727 3sio:E (2.32) BS01 MLK ? GO:0004888 ... Q8WSF8 22009746
    185728 3sio:E (2.32) BS02 MLK ? GO:0004888 ... Q8WSF8 22009746
    185729 3sio:F (2.32) BS01 MLK ? GO:0004888 ... Q8WSF8 22009746
    185730 3sio:F (2.32) BS02 MLK ? GO:0004888 ... Q8WSF8 22009746
    185731 3sio:G (2.32) BS01 MLK ? GO:0004888 ... Q8WSF8 22009746
    185732 3sio:G (2.32) BS02 MLK ? GO:0004888 ... Q8WSF8 22009746
    185733 3sio:H (2.32) BS01 MLK ? GO:0004888 ... Q8WSF8 22009746
    185734 3sio:H (2.32) BS02 MLK ? GO:0004888 ... Q8WSF8 22009746
    185735 3sio:I (2.32) BS01 MLK ? GO:0004888 ... Q8WSF8 22009746
    185736 3sio:I (2.32) BS02 MLK ? GO:0004888 ... Q8WSF8 22009746
    185737 3sio:J (2.32) BS01 MLK ? GO:0004888 ... Q8WSF8 22009746
    185738 3sio:J (2.32) BS02 MLK ? GO:0004888 ... Q8WSF8 22009746
    185739 3sip:E (3.496) BS01 ZN 2.3.2.27 N/A Q24306 21811237
    185740 3sip:F (3.496) BS01 ZN 2.3.2.27 N/A Q24306 21811237
    185741 3siq:A (2.4) BS01 ZN 2.3.2.27 N/A Q24306 21811237
    185742 3siq:B (2.4) BS01 ZN 2.3.2.27 N/A Q24306 21811237
    185743 3siq:C (2.4) BS01 ZN 2.3.2.27 N/A Q24306 21811237
    185744 3siq:D (2.4) BS01 ZN 2.3.2.27 N/A Q24306 21811237
    185745 3siq:E (2.4) BS01 ZN 2.3.2.27 N/A Q24306 21811237
    185746 3siq:F (2.4) BS01 ZN 2.3.2.27 N/A Q24306 21811237
    185747 3sis:A (2.2) BS01 MN0 ? GO:0019028 ... P0C6Y8 21945555
    185748 3sis:B (2.2) BS01 NGC ? GO:0019028 ... P0C6Y8 21945555
    185749 3sit:A (1.8) BS01 SIA ? GO:0019028 ... P0C6Y8 21945555
    185750 3sit:B (1.8) BS01 SIA ? GO:0019028 ... P0C6Y8 21945555
    185751 3siu:A (2.626) BS01 rna ? GO:0000244 ... P55769 21784869
    185752 3siu:B (2.626) BS01 rna ? GO:0000244 ... Q8WWY3 21784869
    185753 3siu:D (2.626) BS01 rna ? GO:0000244 ... P55769 21784869
    185754 3siu:E (2.626) BS01 rna ? GO:0000244 ... Q8WWY3 21784869
    185755 3siv:A (3.304) BS01 rna ? GO:0000244 ... P55769 21784869
    185756 3siv:A (3.304) BS02 rna ? GO:0000244 ... P55769 21784869
    185757 3siv:B (3.304) BS01 rna ? GO:0000244 ... Q8WWY3 21784869
    185758 3siv:B (3.304) BS02 rna ? GO:0000244 ... Q8WWY3 21784869
    185759 3siv:D (3.304) BS01 rna ? GO:0000244 ... P55769 21784869
    185760 3siv:D (3.304) BS02 rna ? GO:0000244 ... P55769 21784869
    185761 3siv:D (3.304) BS03 rna ? GO:0000244 ... P55769 21784869
    185762 3siv:E (3.304) BS01 rna ? GO:0000244 ... Q8WWY3 21784869
    185763 3siv:E (3.304) BS02 rna ? GO:0000244 ... Q8WWY3 21784869
    185764 3siv:G (3.304) BS01 rna ? GO:0000244 ... P55769 21784869
    185765 3siv:G (3.304) BS02 rna ? GO:0000244 ... P55769 21784869
    185766 3siv:H (3.304) BS01 rna ? GO:0000244 ... Q8WWY3 21784869
    185767 3siv:H (3.304) BS02 rna ? GO:0000244 ... Q8WWY3 21784869
    185768 3siv:J (3.304) BS01 rna ? GO:0000244 ... P55769 21784869
    185769 3siv:J (3.304) BS02 rna ? GO:0000244 ... P55769 21784869
    185770 3siv:J (3.304) BS03 rna ? GO:0000244 ... P55769 21784869
    185771 3siv:K (3.304) BS01 rna ? GO:0000244 ... Q8WWY3 21784869
    185772 3siv:K (3.304) BS02 rna ? GO:0000244 ... Q8WWY3 21784869
    185773 3siw:A (1.98) BS01 GDP 2.4.1.- GO:0009312 ... Q9AQ17 22281745
    185774 3siw:A (1.98) BS02 PO4 2.4.1.- GO:0009312 ... Q9AQ17 22281745
    185775 3siw:A (1.98) BS03 PO4 2.4.1.- GO:0009312 ... Q9AQ17 22281745
    185776 3siw:A (1.98) BS04 PO4 2.4.1.- GO:0009312 ... Q9AQ17 22281745
    185777 3six:A (2.35) BS01 GDP 2.4.1.- GO:0009312 ... Q9AQ17 22281745
    185778 3six:A (2.35) BS02 PO4 2.4.1.- GO:0009312 ... Q9AQ17 22281745
    185779 3siy:A (1.35) BS01 ZN ? N/A A0ACD6B8A6 N/A
    185780 3siy:B (1.35) BS01 ZN ? N/A A0ACD6B8A6 N/A
    185781 3siy:C (1.35) BS01 ZN ? N/A A0ACD6B8A6 N/A
    185782 3siy:D (1.35) BS01 ZN ? N/A A0ACD6B8A6 N/A
    185783 3siz:A (1.321) BS01 BMP 4.1.1.23 GO:0004590 ... O26232 N/A
    185784 3siz:A (1.321) BS02 BMP 4.1.1.23 GO:0004590 ... O26232 N/A
    185785 3siz:B (1.321) BS01 BMP 4.1.1.23 GO:0004590 ... O26232 N/A
    185786 3siz:B (1.321) BS02 BMP 4.1.1.23 GO:0004590 ... O26232 N/A
    185787 3sj0:X (2.0) BS01 HEC ? GO:0009055 ... Q8GGK7 23099666
    185788 3sj0:X (2.0) BS02 HEC ? GO:0009055 ... Q8GGK7 23099666
    185789 3sj0:X (2.0) BS03 HEC ? GO:0009055 ... Q8GGK7 23099666
    185790 3sj0:X (2.0) BS04 DXC ? GO:0009055 ... Q8GGK7 23099666
    185791 3sj1:X (1.9) BS01 HEC ? GO:0009055 ... Q8GGK7 23099666
    185792 3sj1:X (1.9) BS02 HEC ? GO:0009055 ... Q8GGK7 23099666
    185793 3sj1:X (1.9) BS03 HEC ? GO:0009055 ... Q8GGK7 23099666
    185794 3sj1:X (1.9) BS04 DXC ? GO:0009055 ... Q8GGK7 23099666
    185795 3sj3:A (1.26) BS01 BMP 4.1.1.23 GO:0004590 ... O26232 23030629
    185796 3sj3:A (1.26) BS02 BMP 4.1.1.23 GO:0004590 ... O26232 23030629
    185797 3sj3:B (1.26) BS01 BMP 4.1.1.23 GO:0004590 ... O26232 23030629
    185798 3sj3:B (1.26) BS02 BMP 4.1.1.23 GO:0004590 ... O26232 23030629
    185799 3sj4:X (1.9) BS01 HEC ? GO:0009055 ... Q8GGK7 23099666
    185800 3sj4:X (1.9) BS02 HEC ? GO:0009055 ... Q8GGK7 23099666

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).