SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    189601 3tom:B (2.3) BS01 HEM ? GO:0005506 ... P0ABE7 22522257
    189602 3tom:B (2.3) BS02 ZN ? GO:0005506 ... P0ABE7 22522257
    189603 3tom:B (2.3) BS03 ZN ? GO:0005506 ... P0ABE7 22522257
    189604 3tom:C (2.3) BS01 HEM ? GO:0005506 ... P0ABE7 22522257
    189605 3tom:C (2.3) BS02 ZN ? GO:0005506 ... P0ABE7 22522257
    189606 3tom:D (2.3) BS01 HEM ? GO:0005506 ... P0ABE7 22522257
    189607 3tom:D (2.3) BS02 ZN ? GO:0005506 ... P0ABE7 22522257
    189608 3tom:D (2.3) BS03 ZN ? GO:0005506 ... P0ABE7 22522257
    189609 3top:A (2.881) BS01 AC1 3.2.1.20 GO:0004553 ... O43451 22058037
    189610 3top:B (2.881) BS01 GLC 3.2.1.20 GO:0004553 ... O43451 22058037
    189611 3top:B (2.881) BS02 AC1 3.2.1.20 GO:0004553 ... O43451 22058037
    189612 3tor:A (2.0) BS01 CA 1.7.2.2 GO:0005506 ... P0ABK9 22103542
    189613 3tor:A (2.0) BS02 HEC 1.7.2.2 GO:0005506 ... P0ABK9 22103542
    189614 3tor:A (2.0) BS03 HEC 1.7.2.2 GO:0005506 ... P0ABK9 22103542
    189615 3tor:A (2.0) BS04 HEC 1.7.2.2 GO:0005506 ... P0ABK9 22103542
    189616 3tor:A (2.0) BS05 HEC 1.7.2.2 GO:0005506 ... P0ABK9 22103542
    189617 3tor:A (2.0) BS06 HEC 1.7.2.2 GO:0005506 ... P0ABK9 22103542
    189618 3tor:A (2.0) BS07 HEC 1.7.2.2 GO:0005506 ... P0ABK9 22103542
    189619 3tor:B (2.0) BS01 CA 1.7.2.2 GO:0005506 ... P0ABK9 22103542
    189620 3tor:B (2.0) BS02 HEC 1.7.2.2 GO:0005506 ... P0ABK9 22103542
    189621 3tor:B (2.0) BS03 HEC 1.7.2.2 GO:0005506 ... P0ABK9 22103542
    189622 3tor:B (2.0) BS04 HEC 1.7.2.2 GO:0005506 ... P0ABK9 22103542
    189623 3tor:B (2.0) BS05 HEC 1.7.2.2 GO:0005506 ... P0ABK9 22103542
    189624 3tor:B (2.0) BS06 HEC 1.7.2.2 GO:0005506 ... P0ABK9 22103542
    189625 3tor:B (2.0) BS07 HEC 1.7.2.2 GO:0005506 ... P0ABK9 22103542
    189626 3tor:C (2.0) BS01 HEC 1.7.2.2 GO:0005506 ... P0ABK9 22103542
    189627 3tor:C (2.0) BS02 CA 1.7.2.2 GO:0005506 ... P0ABK9 22103542
    189628 3tor:C (2.0) BS03 HEC 1.7.2.2 GO:0005506 ... P0ABK9 22103542
    189629 3tor:C (2.0) BS04 HEC 1.7.2.2 GO:0005506 ... P0ABK9 22103542
    189630 3tor:C (2.0) BS05 HEC 1.7.2.2 GO:0005506 ... P0ABK9 22103542
    189631 3tor:C (2.0) BS06 HEC 1.7.2.2 GO:0005506 ... P0ABK9 22103542
    189632 3tor:C (2.0) BS07 HEC 1.7.2.2 GO:0005506 ... P0ABK9 22103542
    189633 3tor:D (2.0) BS01 HEC 1.7.2.2 GO:0005506 ... P0ABK9 22103542
    189634 3tor:D (2.0) BS02 CA 1.7.2.2 GO:0005506 ... P0ABK9 22103542
    189635 3tor:D (2.0) BS03 HEC 1.7.2.2 GO:0005506 ... P0ABK9 22103542
    189636 3tor:D (2.0) BS04 HEC 1.7.2.2 GO:0005506 ... P0ABK9 22103542
    189637 3tor:D (2.0) BS05 HEC 1.7.2.2 GO:0005506 ... P0ABK9 22103542
    189638 3tor:D (2.0) BS06 HEC 1.7.2.2 GO:0005506 ... P0ABK9 22103542
    189639 3tor:D (2.0) BS07 HEC 1.7.2.2 GO:0005506 ... P0ABK9 22103542
    189640 3tos:A (1.55) BS01 SAH ? GO:0008171 ... Q8KNF1 N/A
    189641 3tos:A (1.55) BS02 GLU ? GO:0008171 ... Q8KNF1 N/A
    189642 3tos:B (1.55) BS01 SAH ? GO:0008171 ... Q8KNF1 N/A
    189643 3tos:B (1.55) BS02 GLU ? GO:0008171 ... Q8KNF1 N/A
    189644 3tos:C (1.55) BS01 SAH ? GO:0008171 ... Q8KNF1 N/A
    189645 3tos:C (1.55) BS02 GLU ? GO:0008171 ... Q8KNF1 N/A
    189646 3tos:D (1.55) BS01 SAH ? GO:0008171 ... Q8KNF1 N/A
    189647 3tos:D (1.55) BS02 GLU ? GO:0008171 ... Q8KNF1 N/A
    189648 3tos:E (1.55) BS01 SAH ? GO:0008171 ... Q8KNF1 N/A
    189649 3tos:E (1.55) BS02 GLU ? GO:0008171 ... Q8KNF1 N/A
    189650 3tos:F (1.55) BS01 SAH ? GO:0008171 ... Q8KNF1 N/A
    189651 3tos:F (1.55) BS02 GLU ? GO:0008171 ... Q8KNF1 N/A
    189652 3tos:G (1.55) BS01 SAH ? GO:0008171 ... Q8KNF1 N/A
    189653 3tos:G (1.55) BS02 GLU ? GO:0008171 ... Q8KNF1 N/A
    189654 3tos:H (1.55) BS01 SAH ? GO:0008171 ... Q8KNF1 N/A
    189655 3tos:H (1.55) BS02 GLU ? GO:0008171 ... Q8KNF1 N/A
    189656 3tos:I (1.55) BS01 GLU ? GO:0008171 ... Q8KNF1 N/A
    189657 3tos:I (1.55) BS02 SAH ? GO:0008171 ... Q8KNF1 N/A
    189658 3tos:J (1.55) BS01 SAH ? GO:0008171 ... Q8KNF1 N/A
    189659 3tos:J (1.55) BS02 GLU ? GO:0008171 ... Q8KNF1 N/A
    189660 3tou:A (1.75) BS01 GSH 2.5.1.18 GO:0004364 ... Q8XVV6 N/A
    189661 3tou:A (1.75) BS02 GSH 2.5.1.18 GO:0004364 ... Q8XVV6 N/A
    189662 3tou:B (1.75) BS01 GSH 2.5.1.18 GO:0004364 ... Q8XVV6 N/A
    189663 3tou:B (1.75) BS02 GSH 2.5.1.18 GO:0004364 ... Q8XVV6 N/A
    189664 3tox:A (1.93) BS01 NAP ? N/A Q92SS3 N/A
    189665 3tox:B (1.93) BS01 NAP ? N/A Q92SS3 N/A
    189666 3tox:C (1.93) BS01 NAP ? N/A Q92SS3 N/A
    189667 3tox:D (1.93) BS01 NAP ? N/A Q92SS3 N/A
    189668 3tox:E (1.93) BS01 NAP ? N/A Q92SS3 N/A
    189669 3tox:F (1.93) BS01 NAP ? N/A Q92SS3 N/A
    189670 3tox:G (1.93) BS01 NAP ? N/A Q92SS3 N/A
    189671 3tox:I (1.93) BS01 NAP ? N/A Q92SS3 N/A
    189672 3toy:A (1.8) BS01 CA 5.1.2.2
    5.5.1.1
    GO:0000287 ... A0ACD6B9G9 N/A
    189673 3toy:A (1.8) BS02 CA 5.1.2.2
    5.5.1.1
    GO:0000287 ... A0ACD6B9G9 N/A
    189674 3toy:B (1.8) BS01 CA 5.1.2.2
    5.5.1.1
    GO:0000287 ... A0ACD6B9G9 N/A
    189675 3toy:B (1.8) BS02 CA 5.1.2.2
    5.5.1.1
    GO:0000287 ... A0ACD6B9G9 N/A
    189676 3toy:C (1.8) BS01 CA 5.1.2.2
    5.5.1.1
    GO:0000287 ... A0ACD6B9G9 N/A
    189677 3toy:C (1.8) BS02 CA 5.1.2.2
    5.5.1.1
    GO:0000287 ... A0ACD6B9G9 N/A
    189678 3toy:D (1.8) BS01 CA 5.1.2.2
    5.5.1.1
    GO:0000287 ... A0ACD6B9G9 N/A
    189679 3toy:D (1.8) BS02 CA 5.1.2.2
    5.5.1.1
    GO:0000287 ... A0ACD6B9G9 N/A
    189680 3toz:A (2.2) BS01 NAD 1.1.1.25 GO:0004764 ... Q8Y9N5 N/A
    189681 3toz:B (2.2) BS01 NAD 1.1.1.25 GO:0004764 ... Q8Y9N5 N/A
    189682 3toz:C (2.2) BS01 NAD 1.1.1.25 GO:0004764 ... Q8Y9N5 N/A
    189683 3toz:D (2.2) BS01 NAD 1.1.1.25 GO:0004764 ... Q8Y9N5 N/A
    189684 3toz:E (2.2) BS01 NAD 1.1.1.25 GO:0004764 ... Q8Y9N5 N/A
    189685 3toz:F (2.2) BS01 NAD 1.1.1.25 GO:0004764 ... Q8Y9N5 N/A
    189686 3toz:G (2.2) BS01 NAD 1.1.1.25 GO:0004764 ... Q8Y9N5 N/A
    189687 3toz:H (2.2) BS01 NAD 1.1.1.25 GO:0004764 ... Q8Y9N5 N/A
    189688 3tp0:A (1.9) BS01 FO5 ? GO:0000976 ... P9WMC1 22156370
    189689 3tp1:A (1.6) BS01 DUP 3.4.23.-
    3.6.1.23
    N/A P07570 N/A
    189690 3tp2:A (2.4) BS01 ZN ? GO:0003676 ... Q12046 22407296
    189691 3tp2:B (2.4) BS01 ZN ? GO:0003676 ... Q12046 22407296
    189692 3tp4:B (1.979) BS01 MG N/A GO:0004553 ... N/A 24705591
    189693 3tp5:A (1.8) BS01 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    189694 3tp6:A (1.8) BS01 CA 3.1.31.1 GO:0003676 ... P00644 N/A
    189695 3tp6:A (1.8) BS02 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    189696 3tp7:A (1.9) BS01 CA 3.1.31.1 GO:0003676 ... P00644 N/A
    189697 3tp7:A (1.9) BS02 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    189698 3tp8:A (1.6) BS01 CA 3.1.31.1 GO:0003676 ... P00644 N/A
    189699 3tp8:A (1.6) BS02 THP 3.1.31.1 GO:0003676 ... P00644 N/A
    189700 3tp9:A (2.7) BS01 ZN ? GO:0006749 ... C8WS08 N/A
    189701 3tp9:B (2.7) BS01 ZN ? GO:0006749 ... C8WS08 N/A
    189702 3tpi:Z (1.9) BS01 ILE 3.4.21.4 GO:0004175 ... P00760 N/A
    189703 3tpi:Z (1.9) BS02 VAL 3.4.21.4 GO:0004175 ... P00760 N/A
    189704 3tpi:Z (1.9) BS03 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    189705 3tpm:A (2.1) BS01 peptide ? N/A P52293 21964294
    189706 3tpn:A (1.65) BS01 DUP 3.4.23.-
    3.6.1.23
    N/A P07570 N/A
    189707 3tpp:A (1.6) BS01 5HA 3.4.23.46 GO:0004190 ... P56817 22194329 MOAD: ic50=15nM
    BindingDB: IC50=15nM, EC50=43nM, Ki=233nM
    189708 3tpq:A (3.45) BS01 ATP 3.6.4.- GO:0000287 ... P68135 21964294
    189709 3tpq:A (3.45) BS02 CA 3.6.4.- GO:0000287 ... P68135 21964294
    189710 3tpq:B (3.45) BS01 ATP 3.6.4.- GO:0000287 ... P68135 21964294
    189711 3tpq:C (3.45) BS01 ATP 3.6.4.- GO:0000287 ... P68135 21964294
    189712 3tpq:D (3.45) BS01 ATP 3.6.4.- GO:0000287 ... P68135 21964294
    189713 3tpq:E (3.45) BS01 ATP 3.6.4.- GO:0000287 ... P68135 21964294
    189714 3tpr:A (2.55) BS01 5HA 3.4.23.46 GO:0004190 ... P56817 22194329 BindingDB: IC50=15nM, EC50=43nM, Ki=233nM
    189715 3tps:A (1.85) BS01 DUP 3.4.23.-
    3.6.1.23
    N/A P07570 N/A
    189716 3tpt:A (2.25) BS01 ADP 2.7.11.1 GO:0000287 ... P23874 22999936
    189717 3tpt:B (2.25) BS01 ADP 2.7.11.1 GO:0000287 ... P23874 22999936
    189718 3tpt:B (2.25) BS02 MG 2.7.11.1 GO:0000287 ... P23874 22999936
    189719 3tpt:B (2.25) BS03 MG 2.7.11.1 GO:0000287 ... P23874 22999936
    189720 3tpu:B (3.1) BS01 peptide N/A N/A N/A 22101157
    189721 3tpu:C (3.1) BS01 peptide N/A N/A N/A 22101157
    189722 3tpu:D (3.1) BS01 peptide N/A N/A N/A 22101157
    189723 3tpu:E (3.1) BS01 peptide ? N/A P01897 22101157
    189724 3tpu:G (3.1) BS01 peptide N/A N/A N/A 22101157
    189725 3tpu:H (3.1) BS01 peptide N/A N/A N/A 22101157
    189726 3tpu:I (3.1) BS01 peptide ? N/A P01897 22101157
    189727 3tpu:K (3.1) BS01 peptide ? N/A P01897 22101157
    189728 3tpu:N (3.1) BS01 peptide N/A N/A N/A 22101157
    189729 3tpu:Q (3.1) BS01 peptide ? N/A P01897 22101157
    189730 3tpv:B (2.3) BS01 ADE 2.7.11.1 GO:0000287 ... P23874 22999936
    189731 3tpw:A (1.65) BS01 DUP 3.4.23.-
    3.6.1.23
    N/A P07570 N/A
    189732 3tpx:A (1.8) BS01 peptide 2.3.2.27 GO:0005634 ... Q00987 22694121
    189733 3tpx:A (1.8) BS02 peptide 2.3.2.27 GO:0005634 ... Q00987 22694121
    189734 3tpx:C (1.8) BS01 peptide 2.3.2.27 GO:0005634 ... Q00987 22694121
    189735 3tpx:C (1.8) BS02 peptide 2.3.2.27 GO:0005634 ... Q00987 22694121
    189736 3tpx:C (1.8) BS03 peptide 2.3.2.27 GO:0005634 ... Q00987 22694121
    189737 3tpx:E (1.8) BS01 peptide 2.3.2.27 GO:0005634 ... Q00987 22694121
    189738 3tpy:A (1.75) BS01 DUP 3.4.23.-
    3.6.1.23
    N/A P07570 N/A
    189739 3tpy:A (1.75) BS02 UMP 3.4.23.-
    3.6.1.23
    N/A P07570 N/A
    189740 3tq0:A (1.9) BS01 FMN 1.3.98.1 GO:0004152 ... Q4QEW7 22542640
    189741 3tq0:A (1.9) BS02 FUM 1.3.98.1 GO:0004152 ... Q4QEW7 22542640
    189742 3tq0:B (1.9) BS01 FMN 1.3.98.1 GO:0004152 ... Q4QEW7 22542640
    189743 3tq0:B (1.9) BS02 FUM 1.3.98.1 GO:0004152 ... Q4QEW7 22542640
    189744 3tq1:A (2.556) BS01 dna 2.7.7.7 GO:0003684 ... Q9Y253 22154937
    189745 3tq1:A (2.556) BS02 dna 2.7.7.7 GO:0003684 ... Q9Y253 22154937
    189746 3tq3:A (1.85) BS01 UMP 3.4.23.-
    3.6.1.23
    N/A P07570 N/A
    189747 3tq3:A (1.85) BS02 DUP 3.4.23.-
    3.6.1.23
    N/A P07570 N/A
    189748 3tq4:A (1.6) BS01 UMP 3.4.23.-
    3.6.1.23
    N/A P07570 N/A
    189749 3tq4:A (1.6) BS02 DUP 3.4.23.-
    3.6.1.23
    N/A P07570 N/A
    189750 3tq5:A (1.4) BS01 UMP 3.4.23.-
    3.6.1.23
    N/A P07570 N/A
    189751 3tq6:A (2.45) BS01 dna ? N/A Q00059 22037172
    189752 3tq6:A (2.45) BS02 dna ? N/A Q00059 22037172
    189753 3tq6:A (2.45) BS03 dna ? N/A Q00059 22037172
    189754 3tq6:B (2.45) BS01 dna ? N/A Q00059 22037172
    189755 3tq6:B (2.45) BS02 dna ? N/A Q00059 22037172
    189756 3tq6:B (2.45) BS03 dna ? N/A Q00059 22037172
    189757 3tq8:A (1.9) BS01 NDP 1.5.1.3 GO:0004146 ... Q83AB2 26033498
    189758 3tq8:A (1.9) BS02 TOP 1.5.1.3 GO:0004146 ... Q83AB2 26033498
    189759 3tq9:A (2.3) BS01 NDP 1.5.1.3 GO:0004146 ... Q83AB2 26033498
    189760 3tq9:A (2.3) BS02 MTX 1.5.1.3 GO:0004146 ... Q83AB2 26033498
    189761 3tqa:A (2.3) BS01 NDP 1.5.1.3 GO:0004146 ... Q83AB2 26033498
    189762 3tqb:A (2.4) BS01 NDP 1.5.1.3 GO:0004146 ... Q83AB2 26033498
    189763 3tqc:A (2.3) BS01 ADP 2.7.1.33 GO:0004594 ... Q83EV9 26033498
    189764 3tqc:B (2.3) BS01 ADP 2.7.1.33 GO:0004594 ... Q83EV9 26033498
    189765 3tqe:A (1.5) BS01 GLY 2.3.1.39 GO:0004314 ... Q83E39 26033498
    189766 3tqe:A (1.5) BS02 GLY 2.3.1.39 GO:0004314 ... Q83E39 26033498
    189767 3tqh:A (2.44) BS01 NDP 1.6.5.5 GO:0003960 ... Q83CT0 26033498
    189768 3tqj:A (2.004) BS01 FE2 1.15.1.1 GO:0004784 ... P19685 26033498
    189769 3tqj:B (2.004) BS01 FE2 1.15.1.1 GO:0004784 ... P19685 26033498
    189770 3tqk:A (2.3) BS01 MN 2.5.1.54 GO:0003849 ... Q5NG89 23704901
    189771 3tql:A (1.594) BS01 ARG ? GO:0015276 ... Q83E49 26033498
    189772 3tqo:A (2.3) BS01 ZN 6.1.1.16 GO:0000166 ... Q83BL7 26033498
    189773 3tqp:A (2.2) BS01 MG 4.2.1.11 GO:0000015 ... Q83B44 26033498
    189774 3tqp:B (2.2) BS01 MG 4.2.1.11 GO:0000015 ... Q83B44 26033498
    189775 3tqu:A (1.9) BS01 CA 3.6.1.66 GO:0005829 ... Q83FA3 26033498
    189776 3tqu:B (1.9) BS01 CA 3.6.1.66 GO:0005829 ... Q83FA3 26033498
    189777 3tqu:C (1.9) BS01 CA 3.6.1.66 GO:0005829 ... Q83FA3 26033498
    189778 3tqu:D (1.9) BS01 CA 3.6.1.66 GO:0005829 ... Q83FA3 26033498
    189779 3tqv:A (2.62) BS01 PO4 2.4.2.19 GO:0004514 ... Q5NEY8 23704901
    189780 3tqv:A (2.62) BS02 PO4 2.4.2.19 GO:0004514 ... Q5NEY8 23704901
    189781 3tqv:B (2.62) BS01 PO4 2.4.2.19 GO:0004514 ... Q5NEY8 23704901
    189782 3tqv:B (2.62) BS02 PO4 2.4.2.19 GO:0004514 ... Q5NEY8 23704901
    189783 3tqw:A (2.0) BS01 MET ? N/A Q83F42 26033498
    189784 3tqw:B (2.0) BS01 MET ? N/A Q83F42 26033498
    189785 3tqx:A (2.304) BS01 PLP 2.3.1.29 GO:0005737 ... Q83F40 26033498
    189786 3tqx:A (2.304) BS02 PLP 2.3.1.29 GO:0005737 ... Q83F40 26033498
    189787 3tqx:B (2.304) BS01 PLP 2.3.1.29 GO:0005737 ... Q83F40 26033498
    189788 3tqx:B (2.304) BS02 PLP 2.3.1.29 GO:0005737 ... Q83F40 26033498
    189789 3tr0:A (1.851) BS01 5GP 2.7.4.8 GO:0004385 ... Q83EL7 26033498
    189790 3tr3:A (2.456) BS01 CO ? GO:0005829 ... Q83DW0 26033498
    189791 3tr3:B (2.456) BS01 CO ? GO:0005829 ... Q83DW0 26033498
    189792 3tr4:A (2.0) BS01 MN 3.6.1.1 GO:0000287 ... Q83DR7 26033498
    189793 3tr4:A (2.0) BS02 MG 3.6.1.1 GO:0000287 ... Q83DR7 26033498
    189794 3tr4:B (2.0) BS01 MN 3.6.1.1 GO:0000287 ... Q83DR7 26033498
    189795 3tr4:C (2.0) BS01 MN 3.6.1.1 GO:0000287 ... Q83DR7 26033498
    189796 3tr4:D (2.0) BS01 MN 3.6.1.1 GO:0000287 ... Q83DR7 26033498
    189797 3tr4:E (2.0) BS01 MN 3.6.1.1 GO:0000287 ... Q83DR7 26033498
    189798 3tr4:F (2.0) BS01 MN 3.6.1.1 GO:0000287 ... Q83DR7 26033498
    189799 3tr5:A (2.11) BS01 CA ? GO:0003924 ... Q83DC7 26033498
    189800 3tr5:A (2.11) BS02 GDP ? GO:0003924 ... Q83DC7 26033498

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).