SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    190601 3u18:A (1.9) BS01 Y0X 5.3.2.1
    5.3.3.12
    GO:0001516 ... P14174 22782901 MOAD: ic50=0.81uM
    190602 3u1b:A (1.604) BS01 AMP ? N/A A0A6L8PEJ7 22516613
    190603 3u1b:B (1.604) BS01 AMP ? N/A A0A6L8PEJ7 22516613
    190604 3u1i:B (2.3) BS01 peptide 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0003723 ... Q5UB51 22031935
    190605 3u1i:D (2.3) BS01 peptide 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0003723 ... Q5UB51 22031935
    190606 3u1j:B (1.8) BS01 peptide 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0003723 ... Q5UB51 22031935
    190607 3u1l:A (1.64) BS01 ZN ? GO:0003676 ... Q12046 21957909
    190608 3u1m:A (1.95) BS01 ZN ? GO:0003676 ... Q12046 21957909
    190609 3u1n:A (3.1) BS01 PO4 3.1.5.- N/A Q9Y3Z3 22056990
    190610 3u1n:A (3.1) BS02 ZN 3.1.5.- N/A Q9Y3Z3 22056990
    190611 3u1n:B (3.1) BS01 PO4 3.1.5.- N/A Q9Y3Z3 22056990
    190612 3u1n:B (3.1) BS02 ZN 3.1.5.- N/A Q9Y3Z3 22056990
    190613 3u1n:C (3.1) BS01 PO4 3.1.5.- N/A Q9Y3Z3 22056990
    190614 3u1n:C (3.1) BS02 ZN 3.1.5.- N/A Q9Y3Z3 22056990
    190615 3u1n:D (3.1) BS01 PO4 3.1.5.- N/A Q9Y3Z3 22056990
    190616 3u1n:D (3.1) BS02 ZN 3.1.5.- N/A Q9Y3Z3 22056990
    190617 3u1r:A (2.0) BS01 ZN ? GO:0004222 ... D0VMS8 22132082
    190618 3u1r:A (2.0) BS02 CA ? GO:0004222 ... D0VMS8 22132082
    190619 3u1r:A (2.0) BS03 CA ? GO:0004222 ... D0VMS8 22132082
    190620 3u1r:A (2.0) BS04 CA ? GO:0004222 ... D0VMS8 22132082
    190621 3u1r:A (2.0) BS05 CA ? GO:0004222 ... D0VMS8 22132082
    190622 3u1r:A (2.0) BS06 CA ? GO:0004222 ... D0VMS8 22132082
    190623 3u1r:A (2.0) BS07 CA ? GO:0004222 ... D0VMS8 22132082
    190624 3u1r:A (2.0) BS08 CA ? GO:0004222 ... D0VMS8 22132082
    190625 3u1r:A (2.0) BS09 CA ? GO:0004222 ... D0VMS8 22132082
    190626 3u1y:A (2.0) BS01 ZN 3.5.1.108 GO:0005737 ... P47205 22175825
    190627 3u1y:A (2.0) BS02 03I 3.5.1.108 GO:0005737 ... P47205 22175825 MOAD: ic50<2.13nM
    BindingDB: IC50=0.172nM
    190628 3u1y:B (2.0) BS01 ZN 3.5.1.108 GO:0005737 ... P47205 22175825
    190629 3u1y:B (2.0) BS02 03I 3.5.1.108 GO:0005737 ... P47205 22175825 MOAD: ic50<2.13nM
    BindingDB: IC50=0.172nM
    190630 3u1y:B (2.0) BS03 ZN 3.5.1.108 GO:0005737 ... P47205 22175825
    190631 3u23:A (1.11) BS01 peptide ? N/A Q9Y5K6 26296892
    190632 3u24:A (2.25) BS01 ZN ? N/A Q8EE20 N/A
    190633 3u24:A (2.25) BS02 ZN ? N/A Q8EE20 N/A
    190634 3u24:A (2.25) BS03 ZN ? N/A Q8EE20 N/A
    190635 3u25:A (1.18) BS01 CU ? GO:0005507 ... P00282 22210190
    190636 3u25:B (1.18) BS01 CU ? GO:0005507 ... P00282 22210190
    190637 3u2b:C (2.402) BS01 dna ? N/A Q06831 22181698
    190638 3u2b:C (2.402) BS02 dna ? N/A Q06831 22181698
    190639 3u2c:A (1.0) BS01 NAP 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54
    GO:0001523 ... P15121 21997888
    190640 3u2c:A (1.0) BS02 SUZ 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54
    GO:0001523 ... P15121 21997888 MOAD: ic50=0.4uM
    190641 3u2d:A (1.85) BS01 08B 5.6.2.2 GO:0003677 ... P0A0K8 22183167
    190642 3u2d:A (1.85) BS02 MG 5.6.2.2 GO:0003677 ... P0A0K8 22183167
    190643 3u2d:B (1.85) BS01 08B 5.6.2.2 GO:0003677 ... P0A0K8 22183167
    190644 3u2d:B (1.85) BS02 MG 5.6.2.2 GO:0003677 ... P0A0K8 22183167
    190645 3u2e:A (2.32) BS01 rna ? N/A Q9A310 N/A
    190646 3u2e:A (2.32) BS02 MG ? N/A Q9A310 N/A
    190647 3u2e:A (2.32) BS03 MG ? N/A Q9A310 N/A
    190648 3u2e:B (2.32) BS01 rna ? N/A Q9A310 N/A
    190649 3u2e:B (2.32) BS02 MG ? N/A Q9A310 N/A
    190650 3u2e:B (2.32) BS03 MG ? N/A Q9A310 N/A
    190651 3u2k:A (1.64) BS01 087 5.6.2.2 GO:0003677 ... P0A0K8 22183167 BindingDB: IC50=30nM
    190652 3u2k:A (1.64) BS02 MG 5.6.2.2 GO:0003677 ... P0A0K8 22183167
    190653 3u2k:B (1.64) BS01 087 5.6.2.2 GO:0003677 ... P0A0K8 22183167 BindingDB: IC50=30nM
    190654 3u2k:B (1.64) BS02 MG 5.6.2.2 GO:0003677 ... P0A0K8 22183167
    190655 3u2l:A (1.95) BS01 FAD 1.8.3.2 GO:0016971 ... P55789 22224850
    190656 3u2m:A (2.0) BS01 FAD 1.8.3.2 GO:0016971 ... P55789 22224850
    190657 3u2o:A (2.18) BS01 FMN 1.3.5.2 GO:0004152 ... Q02127 22078215
    190658 3u2o:A (2.18) BS02 03U 1.3.5.2 GO:0004152 ... Q02127 22078215 MOAD: ic50=110nM
    190659 3u2q:A (2.7) BS01 peptide ? GO:0000287 ... P0CE47 22315981
    190660 3u2q:A (2.7) BS02 GDP ? GO:0000287 ... P0CE47 22315981
    190661 3u2s:A (1.797) BS01 MAN N/A N/A N/A 22113616
    190662 3u2s:B (1.797) BS01 MAN N/A N/A N/A 22113616
    190663 3u2s:B (1.797) BS02 BU3 N/A N/A N/A 22113616
    190664 3u2s:H (1.797) BS01 MAN N/A N/A N/A 22113616
    190665 3u2s:L (1.797) BS01 MAN N/A N/A N/A 22113616
    190666 3u2s:L (1.797) BS02 BU3 N/A N/A N/A 22113616
    190667 3u2t:A (2.05) BS01 MN 2.4.1.186 GO:0016757 ... P46976 22160680
    190668 3u2u:A (1.45) BS01 GLC 2.4.1.186 GO:0016757 ... P46976 22160680
    190669 3u2u:A (1.45) BS02 GLC 2.4.1.186 GO:0016757 ... P46976 22160680
    190670 3u2u:A (1.45) BS03 GLC 2.4.1.186 GO:0016757 ... P46976 22160680
    190671 3u2u:A (1.45) BS04 GLC 2.4.1.186 GO:0016757 ... P46976 22160680
    190672 3u2u:A (1.45) BS05 MN 2.4.1.186 GO:0016757 ... P46976 22160680
    190673 3u2u:A (1.45) BS06 UDP 2.4.1.186 GO:0016757 ... P46976 22160680
    190674 3u2u:B (1.45) BS01 GLC 2.4.1.186 GO:0016757 ... P46976 22160680
    190675 3u2u:B (1.45) BS02 GLC 2.4.1.186 GO:0016757 ... P46976 22160680
    190676 3u2u:B (1.45) BS03 GLC 2.4.1.186 GO:0016757 ... P46976 22160680
    190677 3u2u:B (1.45) BS04 MN 2.4.1.186 GO:0016757 ... P46976 22160680
    190678 3u2u:B (1.45) BS05 UDP 2.4.1.186 GO:0016757 ... P46976 22160680
    190679 3u2v:A (1.5) BS01 GLC 2.4.1.186 GO:0016757 ... P46976 22160680
    190680 3u2v:A (1.5) BS02 GLC 2.4.1.186 GO:0016757 ... P46976 22160680
    190681 3u2v:A (1.5) BS03 GLC 2.4.1.186 GO:0016757 ... P46976 22160680
    190682 3u2v:A (1.5) BS04 GLC 2.4.1.186 GO:0016757 ... P46976 22160680
    190683 3u2v:A (1.5) BS05 GLC 2.4.1.186 GO:0016757 ... P46976 22160680
    190684 3u2v:A (1.5) BS06 MN 2.4.1.186 GO:0016757 ... P46976 22160680
    190685 3u2v:A (1.5) BS07 UDP 2.4.1.186 GO:0016757 ... P46976 22160680
    190686 3u2v:B (1.5) BS01 GLC 2.4.1.186 GO:0016757 ... P46976 22160680
    190687 3u2v:B (1.5) BS02 GLC 2.4.1.186 GO:0016757 ... P46976 22160680
    190688 3u2v:B (1.5) BS03 GLC 2.4.1.186 GO:0016757 ... P46976 22160680
    190689 3u2v:B (1.5) BS04 GLC 2.4.1.186 GO:0016757 ... P46976 22160680
    190690 3u2v:B (1.5) BS05 MN 2.4.1.186 GO:0016757 ... P46976 22160680
    190691 3u2v:B (1.5) BS06 UDP 2.4.1.186 GO:0016757 ... P46976 22160680
    190692 3u2w:A (1.68) BS01 MN 2.4.1.186 GO:0016757 ... P46976 22160680
    190693 3u2w:A (1.68) BS02 UDP 2.4.1.186 GO:0016757 ... P46976 22160680
    190694 3u2w:A (1.68) BS03 GLC 2.4.1.186 GO:0016757 ... P46976 22160680
    190695 3u2w:A (1.68) BS04 LCN 2.4.1.186 GO:0016757 ... P46976 22160680
    190696 3u2w:B (1.68) BS01 MN 2.4.1.186 GO:0016757 ... P46976 22160680
    190697 3u2w:B (1.68) BS02 UDP 2.4.1.186 GO:0016757 ... P46976 22160680
    190698 3u2w:B (1.68) BS03 GLC 2.4.1.186 GO:0016757 ... P46976 22160680
    190699 3u2x:A (1.77) BS01 MN 2.4.1.186 GO:0016757 ... P46976 N/A
    190700 3u2x:A (1.77) BS02 UDP 2.4.1.186 GO:0016757 ... P46976 N/A
    190701 3u2x:A (1.77) BS03 ASO 2.4.1.186 GO:0016757 ... P46976 N/A
    190702 3u2x:B (1.77) BS01 MN 2.4.1.186 GO:0016757 ... P46976 N/A
    190703 3u2x:B (1.77) BS02 UDP 2.4.1.186 GO:0016757 ... P46976 N/A
    190704 3u2x:B (1.77) BS03 ASO 2.4.1.186 GO:0016757 ... P46976 N/A
    190705 3u2z:A (2.1) BS01 FBP 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P14618 22922757
    190706 3u2z:A (2.1) BS02 07T 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P14618 22922757
    190707 3u2z:B (2.1) BS01 07T 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P14618 22922757
    190708 3u2z:B (2.1) BS02 FBP 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P14618 22922757
    190709 3u2z:C (2.1) BS01 FBP 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P14618 22922757
    190710 3u2z:C (2.1) BS02 07T 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P14618 22922757
    190711 3u2z:D (2.1) BS01 07T 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P14618 22922757
    190712 3u2z:D (2.1) BS02 FBP 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P14618 22922757
    190713 3u31:A (2.2) BS01 peptide 2.3.1.- GO:0000781 ... Q8IE47 21992006
    190714 3u31:A (2.2) BS02 NAD 2.3.1.- GO:0000781 ... Q8IE47 21992006
    190715 3u31:A (2.2) BS03 ZN 2.3.1.- GO:0000781 ... Q8IE47 21992006
    190716 3u32:L (2.0) BS01 DCW ? GO:0005739 ... P61829 22504883
    190717 3u32:M (2.0) BS01 DCW ? GO:0005739 ... P61829 22504883
    190718 3u32:O (2.0) BS01 DCW ? GO:0005739 ... P61829 22504883
    190719 3u33:A (2.8) BS01 FAD 1.3.99.- GO:0003677 ... P33224 22004173
    190720 3u33:A (2.8) BS02 FAD 1.3.99.- GO:0003677 ... P33224 22004173
    190721 3u33:B (2.8) BS01 FAD 1.3.99.- GO:0003677 ... P33224 22004173
    190722 3u33:B (2.8) BS02 FAD 1.3.99.- GO:0003677 ... P33224 22004173
    190723 3u33:C (2.8) BS01 FAD 1.3.99.- GO:0003677 ... P33224 22004173
    190724 3u33:C (2.8) BS02 FAD 1.3.99.- GO:0003677 ... P33224 22004173
    190725 3u33:D (2.8) BS01 FAD 1.3.99.- GO:0003677 ... P33224 22004173
    190726 3u33:D (2.8) BS02 FAD 1.3.99.- GO:0003677 ... P33224 22004173
    190727 3u33:E (2.8) BS01 FAD 1.3.99.- GO:0003677 ... P33224 22004173
    190728 3u33:E (2.8) BS02 FAD 1.3.99.- GO:0003677 ... P33224 22004173
    190729 3u33:F (2.8) BS01 FAD 1.3.99.- GO:0003677 ... P33224 22004173
    190730 3u33:F (2.8) BS02 FAD 1.3.99.- GO:0003677 ... P33224 22004173
    190731 3u33:G (2.8) BS01 FAD 1.3.99.- GO:0003677 ... P33224 22004173
    190732 3u33:G (2.8) BS02 FAD 1.3.99.- GO:0003677 ... P33224 22004173
    190733 3u33:H (2.8) BS01 FAD 1.3.99.- GO:0003677 ... P33224 22004173
    190734 3u33:H (2.8) BS02 FAD 1.3.99.- GO:0003677 ... P33224 22004173
    190735 3u33:I (2.8) BS01 FAD 1.3.99.- GO:0003677 ... P33224 22004173
    190736 3u33:I (2.8) BS02 FAD 1.3.99.- GO:0003677 ... P33224 22004173
    190737 3u33:J (2.8) BS01 FAD 1.3.99.- GO:0003677 ... P33224 22004173
    190738 3u33:J (2.8) BS02 FAD 1.3.99.- GO:0003677 ... P33224 22004173
    190739 3u33:K (2.8) BS01 FAD 1.3.99.- GO:0003677 ... P33224 22004173
    190740 3u33:K (2.8) BS02 FAD 1.3.99.- GO:0003677 ... P33224 22004173
    190741 3u33:L (2.8) BS01 FAD 1.3.99.- GO:0003677 ... P33224 22004173
    190742 3u33:L (2.8) BS02 FAD 1.3.99.- GO:0003677 ... P33224 22004173
    190743 3u3a:X (1.549) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 N/A
    190744 3u3d:A (2.4) BS01 peptide 2.3.1.- GO:0000781 ... Q8IE47 21992006
    190745 3u3d:A (2.4) BS02 ZN 2.3.1.- GO:0000781 ... Q8IE47 21992006
    190746 3u3e:A (1.21) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 23192025
    190747 3u3e:A (1.21) BS02 IPH 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 23192025
    190748 3u3f:A (3.101) BS01 peptide 2.7.10.2 GO:0004713 ... Q14289 25174335
    190749 3u3f:A (3.101) BS02 peptide 2.7.10.2 GO:0004713 ... Q14289 25174335
    190750 3u3f:B (3.101) BS01 peptide 2.7.10.2 GO:0004713 ... Q14289 25174335
    190751 3u3f:B (3.101) BS02 peptide 2.7.10.2 GO:0004713 ... Q14289 25174335
    190752 3u3f:C (3.101) BS01 peptide 2.7.10.2 GO:0004713 ... Q14289 25174335
    190753 3u3f:D (3.101) BS01 peptide 2.7.10.2 GO:0004713 ... Q14289 25174335
    190754 3u3h:A (0.97) BS01 03W 5.3.1.5 GO:0000287 ... P24300 21995300
    190755 3u3h:A (0.97) BS02 MG 5.3.1.5 GO:0000287 ... P24300 21995300
    190756 3u3h:A (0.97) BS03 MG 5.3.1.5 GO:0000287 ... P24300 21995300
    190757 3u3j:A (2.7) BS01 A3P 2.8.2.1 GO:0004062 ... P50225 22069470
    190758 3u3j:B (2.7) BS01 A3P 2.8.2.1 GO:0004062 ... P50225 22069470
    190759 3u3k:A (2.36) BS01 A3P 2.8.2.1 GO:0004062 ... P50225 22069470
    190760 3u3k:A (2.36) BS02 03V 2.8.2.1 GO:0004062 ... P50225 22069470
    190761 3u3k:B (2.36) BS01 A3P 2.8.2.1 GO:0004062 ... P50225 22069470
    190762 3u3k:B (2.36) BS02 03V 2.8.2.1 GO:0004062 ... P50225 22069470
    190763 3u3m:A (2.3) BS01 A3P 2.8.2.1 GO:0004062 ... P50225 22069470
    190764 3u3m:A (2.3) BS02 3QV 2.8.2.1 GO:0004062 ... P50225 22069470
    190765 3u3o:A (2.0) BS01 3QV 2.8.2.1 GO:0004062 ... P50225 22069470
    190766 3u3o:A (2.0) BS02 3QV 2.8.2.1 GO:0004062 ... P50225 22069470
    190767 3u3o:A (2.0) BS03 A3P 2.8.2.1 GO:0004062 ... P50225 22069470
    190768 3u3r:A (2.36) BS01 NPO 2.8.2.1 GO:0004062 ... P50225 22069470
    190769 3u3r:A (2.36) BS02 A3P 2.8.2.1 GO:0004062 ... P50225 22069470
    190770 3u3r:A (2.36) BS03 NPO 2.8.2.1 GO:0004062 ... P50225 22069470
    190771 3u3u:C (2.5) BS01 EAH ? GO:0005576 ... F8QQG5 22311975 MOAD: Kd=133.3nM
    190772 3u3w:A (2.4) BS01 peptide ? GO:0003677 ... Q45782 23277548
    190773 3u3w:A (2.4) BS02 dna ? GO:0003677 ... Q45782 23277548
    190774 3u3w:A (2.4) BS03 dna ? GO:0003677 ... Q45782 23277548
    190775 3u3w:B (2.4) BS01 peptide ? GO:0003677 ... Q45782 23277548
    190776 3u3w:B (2.4) BS02 dna ? GO:0003677 ... Q45782 23277548
    190777 3u3w:B (2.4) BS03 dna ? GO:0003677 ... Q45782 23277548
    190778 3u3y:A (2.28) BS01 dna 3.1.11.2 GO:0000077 ... Q91XB0 22071149
    190779 3u3y:B (2.28) BS01 dna 3.1.11.2 GO:0000077 ... Q91XB0 22071149
    190780 3u3z:A (1.5) BS01 peptide ? N/A Q8NEM0 22908299
    190781 3u40:A (2.05) BS01 ADN 2.4.2.1 GO:0003824 ... C4LXG4 21904041
    190782 3u40:B (2.05) BS01 ADN 2.4.2.1 GO:0003824 ... C4LXG4 21904041
    190783 3u40:C (2.05) BS01 ADN 2.4.2.1 GO:0003824 ... C4LXG4 21904041
    190784 3u40:D (2.05) BS01 ADN 2.4.2.1 GO:0003824 ... C4LXG4 21904041
    190785 3u40:E (2.05) BS01 ADN 2.4.2.1 GO:0003824 ... C4LXG4 21904041
    190786 3u40:E (2.05) BS02 ADN 2.4.2.1 GO:0003824 ... C4LXG4 21904041
    190787 3u40:F (2.05) BS01 ADN 2.4.2.1 GO:0003824 ... C4LXG4 21904041
    190788 3u43:B (1.72) BS01 ZN 3.1.-.- GO:0004519 ... P04419 22306467
    190789 3u43:B (1.72) BS02 CA 3.1.-.- GO:0004519 ... P04419 22306467
    190790 3u44:A (3.201) BS01 dna 3.1.-.-
    5.6.2.4
    GO:0000724 ... P23478 22307084
    190791 3u44:B (3.201) BS01 dna 3.1.-.- GO:0000724 ... P23477 22307084
    190792 3u44:B (3.201) BS02 SF4 3.1.-.- GO:0000724 ... P23477 22307084
    190793 3u45:X (1.699) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 N/A
    190794 3u47:A (1.6) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 N/A
    190795 3u48:A (2.2) BS01 BGC N/A GO:0004553 ... N/A 23580647
    190796 3u48:A (2.2) BS02 CA N/A GO:0004553 ... N/A 23580647
    190797 3u48:B (2.2) BS01 BGC N/A GO:0004553 ... N/A 23580647
    190798 3u48:B (2.2) BS02 CA N/A GO:0004553 ... N/A 23580647
    190799 3u4a:A (2.196) BS01 BGC N/A GO:0004553 ... N/A 23580647
    190800 3u4a:A (2.196) BS02 BGC N/A GO:0004553 ... N/A 23580647

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).