SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
  • Sort results by
    << < 945 946 947 948 949 950 951 952 953 954 955 956 957 958 959 960 961 962 963 964 965 > >>
    Go to page

    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    190801 3u4a:A (2.196) BS03 CA N/A GO:0004553 ... N/A 23580647
    190802 3u4a:B (2.196) BS01 BGC N/A GO:0004553 ... N/A 23580647
    190803 3u4a:B (2.196) BS02 BGC N/A GO:0004553 ... N/A 23580647
    190804 3u4a:B (2.196) BS03 BGC N/A GO:0004553 ... N/A 23580647
    190805 3u4c:A (2.03) BS01 NDP 1.3.1.- GO:0005737 ... P39644 23519407
    190806 3u4e:A (2.185) BS01 MAN N/A N/A N/A 22113616
    190807 3u4e:A (2.185) BS02 MAN N/A N/A N/A 22113616
    190808 3u4e:B (2.185) BS01 MAN N/A N/A N/A 22113616
    190809 3u4e:H (2.185) BS01 MAN N/A N/A N/A 22113616
    190810 3u4e:H (2.185) BS02 MAN N/A N/A N/A 22113616
    190811 3u4e:L (2.185) BS01 MAN N/A N/A N/A 22113616
    190812 3u4f:A (1.9) BS01 MG ? GO:0000287 ... A3SMJ4 N/A
    190813 3u4f:A (1.9) BS02 MG ? GO:0000287 ... A3SMJ4 N/A
    190814 3u4f:B (1.9) BS01 MG ? GO:0000287 ... A3SMJ4 N/A
    190815 3u4f:B (1.9) BS02 MG ? GO:0000287 ... A3SMJ4 N/A
    190816 3u4f:C (1.9) BS01 MG ? GO:0000287 ... A3SMJ4 N/A
    190817 3u4f:C (1.9) BS02 MG ? GO:0000287 ... A3SMJ4 N/A
    190818 3u4f:D (1.9) BS01 MG ? GO:0000287 ... A3SMJ4 N/A
    190819 3u4f:D (1.9) BS02 MG ? GO:0000287 ... A3SMJ4 N/A
    190820 3u4h:A (1.878) BS01 C8R 2.4.99.20
    3.2.2.-
    3.2.2.6
    GO:0061809 ... P28907 23840430
    190821 3u4h:B (1.878) BS01 C8R 2.4.99.20
    3.2.2.-
    3.2.2.6
    GO:0061809 ... P28907 23840430
    190822 3u4i:A (2.118) BS01 CVR 2.4.99.20
    3.2.2.-
    3.2.2.6
    GO:0061809 ... P28907 23840430
    190823 3u4j:A (2.0) BS01 CA ? GO:0016491 ... Q930S8 N/A
    190824 3u4l:A (2.4) BS01 ATP 3.6.4.- GO:0001738 ... P60712 22366544
    190825 3u4m:A (2.0) BS01 rna ? GO:0003723 ... P27150 22868771
    190826 3u4m:A (2.0) BS02 MG ? GO:0003723 ... P27150 22868771
    190827 3u4o:A (1.77) BS01 08E 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13
    GO:0003723 ... O92972 22104146 MOAD: ic50=0.053uM
    190828 3u4o:B (1.77) BS01 08E 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13
    GO:0003723 ... O92972 22104146 MOAD: ic50=0.053uM
    190829 3u4q:A (2.8) BS01 dna 3.1.-.-
    5.6.2.4
    GO:0000724 ... P23478 22307084
    190830 3u4q:B (2.8) BS01 dna 3.1.-.- GO:0000724 ... P23477 22307084
    190831 3u4r:A (2.0) BS01 08F 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13
    GO:0003723 ... O92972 22104146 MOAD: ic50=0.039uM
    190832 3u4r:B (2.0) BS01 08F 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13
    GO:0003723 ... O92972 22104146 MOAD: ic50=0.039uM
    190833 3u4s:A (2.15) BS01 peptide 1.14.11.66
    1.14.11.69
    N/A O75164 22241642
    190834 3u4s:A (2.15) BS02 ZN 1.14.11.66
    1.14.11.69
    N/A O75164 22241642
    190835 3u4s:A (2.15) BS03 08P 1.14.11.66
    1.14.11.69
    N/A O75164 22241642
    190836 3u4s:B (2.15) BS01 peptide 1.14.11.66
    1.14.11.69
    N/A O75164 22241642
    190837 3u4s:B (2.15) BS02 ZN 1.14.11.66
    1.14.11.69
    N/A O75164 22241642
    190838 3u4s:B (2.15) BS03 08P 1.14.11.66
    1.14.11.69
    N/A O75164 22241642
    190839 3u4u:A (2.2) BS01 LNH 2.7.11.1 GO:0004672 ... P68400 24900464 BindingDB: IC50=<3.0nM
    190840 3u4w:A (1.9) BS01 peptide 2.7.10.2 GO:0004672 ... P00523 22344177
    190841 3u4x:A (2.16) BS01 CA ? GO:0005509 ... J9PBR3 22554687
    190842 3u4x:A (2.16) BS02 MN ? GO:0005509 ... J9PBR3 22554687
    190843 3u4x:A (2.16) BS03 XMM ? GO:0005509 ... J9PBR3 22554687
    190844 3u50:C (2.5) BS01 ZN ? N/A D2CVN6 22143754
    190845 3u51:A (2.241) BS01 peptide 2.7.10.2 GO:0004672 ... P00523 22344177
    190846 3u51:B (2.241) BS01 peptide 2.7.10.2 GO:0004672 ... P00523 22344177
    190847 3u52:A (1.95) BS01 FE ? GO:0016491 ... Q84AQ2 22136180
    190848 3u52:A (1.95) BS02 FE ? GO:0016491 ... Q84AQ2 22136180
    190849 3u52:A (1.95) BS03 ZN ? GO:0016491 ... Q84AQ2 22136180
    190850 3u52:A (1.95) BS04 CU ? GO:0016491 ... Q84AQ2 22136180
    190851 3u52:A (1.95) BS05 GOL ? GO:0016491 ... Q84AQ2 22136180
    190852 3u52:A (1.95) BS06 GOL ? GO:0016491 ... Q84AQ2 22136180
    190853 3u52:A (1.95) BS07 GOL ? GO:0016491 ... Q84AQ2 22136180
    190854 3u52:A (1.95) BS08 GOL ? GO:0016491 ... Q84AQ2 22136180
    190855 3u52:B (1.95) BS01 FE ? GO:0016491 ... Q84AQ2 22136180
    190856 3u52:B (1.95) BS02 FE ? GO:0016491 ... Q84AQ2 22136180
    190857 3u52:B (1.95) BS03 ZN ? GO:0016491 ... Q84AQ2 22136180
    190858 3u52:B (1.95) BS04 CU ? GO:0016491 ... Q84AQ2 22136180
    190859 3u52:B (1.95) BS05 GOL ? GO:0016491 ... Q84AQ2 22136180
    190860 3u52:C (1.95) BS01 GOL ? GO:0016491 ... Q84AQ4 22136180
    190861 3u52:D (1.95) BS01 GOL ? GO:0016491 ... Q84AQ4 22136180
    190862 3u52:F (1.95) BS01 GOL ? GO:0018662 ... Q84AQ1 22136180
    190863 3u54:A (2.35) BS01 CD 6.3.2.6 GO:0004639 ... O57978 23137517
    190864 3u54:A (2.35) BS02 CD 6.3.2.6 GO:0004639 ... O57978 23137517
    190865 3u54:A (2.35) BS03 CD 6.3.2.6 GO:0004639 ... O57978 23137517
    190866 3u54:A (2.35) BS04 CD 6.3.2.6 GO:0004639 ... O57978 23137517
    190867 3u54:B (2.35) BS01 CD 6.3.2.6 GO:0004639 ... O57978 23137517
    190868 3u54:B (2.35) BS02 CD 6.3.2.6 GO:0004639 ... O57978 23137517
    190869 3u54:B (2.35) BS03 CD 6.3.2.6 GO:0004639 ... O57978 23137517
    190870 3u56:A (2.1) BS01 rna ? GO:0003723 ... P27150 N/A
    190871 3u56:A (2.1) BS02 MG ? GO:0003723 ... P27150 N/A
    190872 3u57:A (2.43) BS01 DH8 2.4.1.219
    3.2.1.125
    GO:0004553 ... Q9SPP9 22004291
    190873 3u57:B (2.43) BS01 DH8 2.4.1.219
    3.2.1.125
    GO:0004553 ... Q9SPP9 22004291
    190874 3u58:A (2.613) BS01 dna N/A GO:0003676 ... N/A 22143754
    190875 3u58:B (2.613) BS01 dna N/A GO:0003676 ... N/A 22143754
    190876 3u58:B (2.613) BS02 dna N/A GO:0003676 ... N/A 22143754
    190877 3u58:C (2.613) BS01 dna N/A GO:0003676 ... N/A 22143754
    190878 3u58:C (2.613) BS02 dna N/A GO:0003676 ... N/A 22143754
    190879 3u58:D (2.613) BS01 dna N/A GO:0003676 ... N/A 22143754
    190880 3u58:D (2.613) BS02 dna N/A GO:0003676 ... N/A 22143754
    190881 3u5j:A (1.6) BS01 08H ? N/A O60885 22137933 MOAD: Kd=2.46uM
    BindingDB: Kd=2460nM
    190882 3u5k:A (1.8) BS01 08J ? N/A O60885 22137933
    190883 3u5k:B (1.8) BS01 08J ? N/A O60885 22137933
    190884 3u5k:C (1.8) BS01 08J ? N/A O60885 22137933
    190885 3u5k:D (1.8) BS01 08J ? N/A O60885 22137933
    190886 3u5l:A (1.39) BS01 08K ? N/A O60885 22137933 MOAD: Kd=0.64uM
    BindingDB: Kd=640nM
    190887 3u5m:A (3.08) BS01 ZN 2.3.2.27 N/A Q9UPN9 22196728
    190888 3u5m:A (3.08) BS02 ZN 2.3.2.27 N/A Q9UPN9 22196728
    190889 3u5m:B (3.08) BS01 ZN 2.3.2.27 N/A Q9UPN9 22196728
    190890 3u5m:B (3.08) BS02 ZN 2.3.2.27 N/A Q9UPN9 22196728
    190891 3u5m:C (3.08) BS01 ZN 2.3.2.27 N/A Q9UPN9 22196728
    190892 3u5m:C (3.08) BS02 ZN 2.3.2.27 N/A Q9UPN9 22196728
    190893 3u5m:D (3.08) BS01 ZN 2.3.2.27 N/A Q9UPN9 22196728
    190894 3u5m:D (3.08) BS02 ZN 2.3.2.27 N/A Q9UPN9 22196728
    190895 3u5m:E (3.08) BS01 ZN 2.3.2.27 N/A Q9UPN9 22196728
    190896 3u5m:E (3.08) BS02 ZN 2.3.2.27 N/A Q9UPN9 22196728
    190897 3u5m:F (3.08) BS01 ZN 2.3.2.27 N/A Q9UPN9 22196728
    190898 3u5m:F (3.08) BS02 ZN 2.3.2.27 N/A Q9UPN9 22196728
    190899 3u5m:G (3.08) BS01 ZN 2.3.2.27 N/A Q9UPN9 22196728
    190900 3u5m:G (3.08) BS02 ZN 2.3.2.27 N/A Q9UPN9 22196728
    190901 3u5m:H (3.08) BS01 ZN 2.3.2.27 N/A Q9UPN9 22196728
    190902 3u5m:H (3.08) BS02 ZN 2.3.2.27 N/A Q9UPN9 22196728
    190903 3u5m:I (3.08) BS01 ZN 2.3.2.27 N/A Q9UPN9 22196728
    190904 3u5m:I (3.08) BS02 ZN 2.3.2.27 N/A Q9UPN9 22196728
    190905 3u5m:J (3.08) BS01 ZN 2.3.2.27 N/A Q9UPN9 22196728
    190906 3u5m:J (3.08) BS02 ZN 2.3.2.27 N/A Q9UPN9 22196728
    190907 3u5m:K (3.08) BS01 CA 2.3.2.27 N/A Q9UPN9 22196728
    190908 3u5m:K (3.08) BS02 ZN 2.3.2.27 N/A Q9UPN9 22196728
    190909 3u5m:K (3.08) BS03 ZN 2.3.2.27 N/A Q9UPN9 22196728
    190910 3u5m:L (3.08) BS01 ZN 2.3.2.27 N/A Q9UPN9 22196728
    190911 3u5m:L (3.08) BS02 ZN 2.3.2.27 N/A Q9UPN9 22196728
    190912 3u5n:A (1.95) BS01 peptide 2.3.2.27 N/A Q9UPN9 22196728
    190913 3u5n:A (1.95) BS02 peptide 2.3.2.27 N/A Q9UPN9 22196728
    190914 3u5n:A (1.95) BS03 ZN 2.3.2.27 N/A Q9UPN9 22196728
    190915 3u5n:A (1.95) BS04 ZN 2.3.2.27 N/A Q9UPN9 22196728
    190916 3u5n:B (1.95) BS01 peptide 2.3.2.27 N/A Q9UPN9 22196728
    190917 3u5n:B (1.95) BS02 ZN 2.3.2.27 N/A Q9UPN9 22196728
    190918 3u5n:B (1.95) BS03 ZN 2.3.2.27 N/A Q9UPN9 22196728
    190919 3u5o:A (2.7) BS01 peptide 2.3.2.27 N/A Q9UPN9 22196728
    190920 3u5o:A (2.7) BS02 ZN 2.3.2.27 N/A Q9UPN9 22196728
    190921 3u5o:A (2.7) BS03 ZN 2.3.2.27 N/A Q9UPN9 22196728
    190922 3u5o:B (2.7) BS01 peptide 2.3.2.27 N/A Q9UPN9 22196728
    190923 3u5o:B (2.7) BS02 peptide 2.3.2.27 N/A Q9UPN9 22196728
    190924 3u5o:B (2.7) BS03 ZN 2.3.2.27 N/A Q9UPN9 22196728
    190925 3u5o:B (2.7) BS04 ZN 2.3.2.27 N/A Q9UPN9 22196728
    190926 3u5o:C (2.7) BS01 peptide 2.3.2.27 N/A Q9UPN9 22196728
    190927 3u5o:C (2.7) BS02 ZN 2.3.2.27 N/A Q9UPN9 22196728
    190928 3u5o:C (2.7) BS03 ZN 2.3.2.27 N/A Q9UPN9 22196728
    190929 3u5o:D (2.7) BS01 peptide 2.3.2.27 N/A Q9UPN9 22196728
    190930 3u5o:D (2.7) BS02 ZN 2.3.2.27 N/A Q9UPN9 22196728
    190931 3u5o:D (2.7) BS03 ZN 2.3.2.27 N/A Q9UPN9 22196728
    190932 3u5o:E (2.7) BS01 peptide 2.3.2.27 N/A Q9UPN9 22196728
    190933 3u5o:E (2.7) BS02 ZN 2.3.2.27 N/A Q9UPN9 22196728
    190934 3u5o:E (2.7) BS03 ZN 2.3.2.27 N/A Q9UPN9 22196728
    190935 3u5o:F (2.7) BS01 peptide 2.3.2.27 N/A Q9UPN9 22196728
    190936 3u5o:F (2.7) BS02 ZN 2.3.2.27 N/A Q9UPN9 22196728
    190937 3u5o:F (2.7) BS03 ZN 2.3.2.27 N/A Q9UPN9 22196728
    190938 3u5o:G (2.7) BS01 peptide 2.3.2.27 N/A Q9UPN9 22196728
    190939 3u5o:G (2.7) BS02 ZN 2.3.2.27 N/A Q9UPN9 22196728
    190940 3u5o:G (2.7) BS03 ZN 2.3.2.27 N/A Q9UPN9 22196728
    190941 3u5o:H (2.7) BS01 peptide 2.3.2.27 N/A Q9UPN9 22196728
    190942 3u5o:H (2.7) BS02 ZN 2.3.2.27 N/A Q9UPN9 22196728
    190943 3u5o:H (2.7) BS03 ZN 2.3.2.27 N/A Q9UPN9 22196728
    190944 3u5p:A (2.8) BS01 peptide 2.3.2.27 N/A Q9UPN9 22196728
    190945 3u5p:A (2.8) BS02 ZN 2.3.2.27 N/A Q9UPN9 22196728
    190946 3u5p:A (2.8) BS03 ZN 2.3.2.27 N/A Q9UPN9 22196728
    190947 3u5p:B (2.8) BS01 peptide 2.3.2.27 N/A Q9UPN9 22196728
    190948 3u5p:B (2.8) BS02 ZN 2.3.2.27 N/A Q9UPN9 22196728
    190949 3u5p:B (2.8) BS03 ZN 2.3.2.27 N/A Q9UPN9 22196728
    190950 3u5p:C (2.8) BS01 peptide 2.3.2.27 N/A Q9UPN9 22196728
    190951 3u5p:C (2.8) BS02 ZN 2.3.2.27 N/A Q9UPN9 22196728
    190952 3u5p:C (2.8) BS03 ZN 2.3.2.27 N/A Q9UPN9 22196728
    190953 3u5p:D (2.8) BS01 peptide 2.3.2.27 N/A Q9UPN9 22196728
    190954 3u5p:D (2.8) BS02 ZN 2.3.2.27 N/A Q9UPN9 22196728
    190955 3u5p:D (2.8) BS03 ZN 2.3.2.27 N/A Q9UPN9 22196728
    190956 3u5p:E (2.8) BS01 peptide 2.3.2.27 N/A Q9UPN9 22196728
    190957 3u5p:E (2.8) BS02 ZN 2.3.2.27 N/A Q9UPN9 22196728
    190958 3u5p:E (2.8) BS03 ZN 2.3.2.27 N/A Q9UPN9 22196728
    190959 3u5p:F (2.8) BS01 peptide 2.3.2.27 N/A Q9UPN9 22196728
    190960 3u5p:F (2.8) BS02 ZN 2.3.2.27 N/A Q9UPN9 22196728
    190961 3u5p:F (2.8) BS03 ZN 2.3.2.27 N/A Q9UPN9 22196728
    190962 3u5p:G (2.8) BS01 peptide 2.3.2.27 N/A Q9UPN9 22196728
    190963 3u5p:G (2.8) BS02 ZN 2.3.2.27 N/A Q9UPN9 22196728
    190964 3u5p:G (2.8) BS03 ZN 2.3.2.27 N/A Q9UPN9 22196728
    190965 3u5p:H (2.8) BS01 peptide 2.3.2.27 N/A Q9UPN9 22196728
    190966 3u5p:H (2.8) BS02 ZN 2.3.2.27 N/A Q9UPN9 22196728
    190967 3u5p:H (2.8) BS03 ZN 2.3.2.27 N/A Q9UPN9 22196728
    190968 3u5s:A (1.5) BS01 FAD 1.8.3.2 GO:0016971 ... P55789 23159557
    190969 3u5y:A (2.3) BS01 SCG 2.4.1.219
    3.2.1.125
    GO:0004553 ... Q9SPP9 22004291
    190970 3u5y:B (2.3) BS01 SCG 2.4.1.219
    3.2.1.125
    GO:0004553 ... Q9SPP9 22004291
    190971 3u5z:A (3.5) BS01 dna ? GO:0003677 ... P04527 22194570
    190972 3u5z:B (3.5) BS01 dna 3.6.4.- GO:0000166 ... P04526 22194570
    190973 3u5z:B (3.5) BS02 08T 3.6.4.- GO:0000166 ... P04526 22194570
    190974 3u5z:B (3.5) BS03 MG 3.6.4.- GO:0000166 ... P04526 22194570
    190975 3u5z:C (3.5) BS01 dna 3.6.4.- GO:0000166 ... P04526 22194570
    190976 3u5z:C (3.5) BS02 08T 3.6.4.- GO:0000166 ... P04526 22194570
    190977 3u5z:C (3.5) BS03 MG 3.6.4.- GO:0000166 ... P04526 22194570
    190978 3u5z:D (3.5) BS01 dna 3.6.4.- GO:0000166 ... P04526 22194570
    190979 3u5z:D (3.5) BS02 08T 3.6.4.- GO:0000166 ... P04526 22194570
    190980 3u5z:D (3.5) BS03 MG 3.6.4.- GO:0000166 ... P04526 22194570
    190981 3u5z:E (3.5) BS01 dna 3.6.4.- GO:0000166 ... P04526 22194570
    190982 3u5z:E (3.5) BS02 ADP 3.6.4.- GO:0000166 ... P04526 22194570
    190983 3u5z:K (3.5) BS01 dna ? GO:0003677 ... P04527 22194570
    190984 3u5z:L (3.5) BS01 dna 3.6.4.- GO:0000166 ... P04526 22194570
    190985 3u5z:L (3.5) BS02 08T 3.6.4.- GO:0000166 ... P04526 22194570
    190986 3u5z:L (3.5) BS03 MG 3.6.4.- GO:0000166 ... P04526 22194570
    190987 3u5z:M (3.5) BS01 dna 3.6.4.- GO:0000166 ... P04526 22194570
    190988 3u5z:M (3.5) BS02 08T 3.6.4.- GO:0000166 ... P04526 22194570
    190989 3u5z:M (3.5) BS03 MG 3.6.4.- GO:0000166 ... P04526 22194570
    190990 3u5z:N (3.5) BS01 dna 3.6.4.- GO:0000166 ... P04526 22194570
    190991 3u5z:N (3.5) BS02 08T 3.6.4.- GO:0000166 ... P04526 22194570
    190992 3u5z:N (3.5) BS03 MG 3.6.4.- GO:0000166 ... P04526 22194570
    190993 3u5z:O (3.5) BS01 dna 3.6.4.- GO:0000166 ... P04526 22194570
    190994 3u5z:O (3.5) BS02 ADP 3.6.4.- GO:0000166 ... P04526 22194570
    190995 3u60:A (3.34) BS01 dna ? GO:0003677 ... P04527 22194570
    190996 3u60:B (3.34) BS01 dna 3.6.4.- GO:0000166 ... P04526 22194570
    190997 3u60:B (3.34) BS02 08T 3.6.4.- GO:0000166 ... P04526 22194570
    190998 3u60:C (3.34) BS01 dna 3.6.4.- GO:0000166 ... P04526 22194570
    190999 3u60:C (3.34) BS02 08T 3.6.4.- GO:0000166 ... P04526 22194570
    191000 3u60:C (3.34) BS03 MG 3.6.4.- GO:0000166 ... P04526 22194570

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).