SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
  • Sort results by
    << < 962 963 964 965 966 967 968 969 970 971 972 973 974 975 976 977 978 979 980 981 982 > >>
    Go to page

    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    194201 3v3y:L (2.8) BS03 U10 ? GO:0009772 ... P0C0Y8 22365928
    194202 3v3y:L (2.8) BS04 BCL ? GO:0009772 ... P0C0Y8 22365928
    194203 3v3y:L (2.8) BS05 BCL ? GO:0009772 ... P0C0Y8 22365928
    194204 3v3y:L (2.8) BS06 BPH ? GO:0009772 ... P0C0Y8 22365928
    194205 3v3y:L (2.8) BS07 FE ? GO:0009772 ... P0C0Y8 22365928
    194206 3v3y:L (2.8) BS08 U10 ? GO:0009772 ... P0C0Y8 22365928
    194207 3v3y:M (2.8) BS01 BPH ? GO:0009772 ... P0C0Y9 22365928
    194208 3v3y:M (2.8) BS02 BCL ? GO:0009772 ... P0C0Y9 22365928
    194209 3v3y:M (2.8) BS03 BCL ? GO:0009772 ... P0C0Y9 22365928
    194210 3v3y:M (2.8) BS04 BCL ? GO:0009772 ... P0C0Y9 22365928
    194211 3v3y:M (2.8) BS05 BPH ? GO:0009772 ... P0C0Y9 22365928
    194212 3v3y:M (2.8) BS06 FE ? GO:0009772 ... P0C0Y9 22365928
    194213 3v3y:M (2.8) BS07 U10 ? GO:0009772 ... P0C0Y9 22365928
    194214 3v3y:M (2.8) BS08 SPN ? GO:0009772 ... P0C0Y9 22365928
    194215 3v3z:L (2.9) BS01 BCL ? GO:0009772 ... P0C0Y8 22365928
    194216 3v3z:L (2.9) BS02 BCL ? GO:0009772 ... P0C0Y8 22365928
    194217 3v3z:L (2.9) BS03 BCL ? GO:0009772 ... P0C0Y8 22365928
    194218 3v3z:L (2.9) BS04 BPH ? GO:0009772 ... P0C0Y8 22365928
    194219 3v3z:L (2.9) BS05 U10 ? GO:0009772 ... P0C0Y8 22365928
    194220 3v3z:L (2.9) BS06 BPH ? GO:0009772 ... P0C0Y8 22365928
    194221 3v3z:L (2.9) BS07 FE ? GO:0009772 ... P0C0Y8 22365928
    194222 3v3z:M (2.9) BS01 BCL ? GO:0009772 ... P0C0Y9 22365928
    194223 3v3z:M (2.9) BS02 BCL ? GO:0009772 ... P0C0Y9 22365928
    194224 3v3z:M (2.9) BS03 BPH ? GO:0009772 ... P0C0Y9 22365928
    194225 3v3z:M (2.9) BS04 BCL ? GO:0009772 ... P0C0Y9 22365928
    194226 3v3z:M (2.9) BS05 BPH ? GO:0009772 ... P0C0Y9 22365928
    194227 3v3z:M (2.9) BS06 FE ? GO:0009772 ... P0C0Y9 22365928
    194228 3v3z:M (2.9) BS07 U10 ? GO:0009772 ... P0C0Y9 22365928
    194229 3v3z:M (2.9) BS08 SPN ? GO:0009772 ... P0C0Y9 22365928
    194230 3v43:A (1.47) BS01 peptide 2.3.1.48 N/A Q92794 22713874
    194231 3v43:A (1.47) BS02 ZN 2.3.1.48 N/A Q92794 22713874
    194232 3v43:A (1.47) BS03 ZN 2.3.1.48 N/A Q92794 22713874
    194233 3v43:A (1.47) BS04 ZN 2.3.1.48 N/A Q92794 22713874
    194234 3v43:A (1.47) BS05 ZN 2.3.1.48 N/A Q92794 22713874
    194235 3v49:A (1.7) BS01 peptide ? N/A P10275 22897611
    194236 3v49:A (1.7) BS02 PK0 ? N/A P10275 22897611 MOAD: ic50=9.6nM
    BindingDB: IC50=9.6nM
    194237 3v4a:A (1.95) BS01 peptide ? N/A P10275 22897611
    194238 3v4a:A (1.95) BS02 PK1 ? N/A P10275 22897611
    194239 3v4b:A (1.4) BS01 MG 4.2.1.-
    4.2.1.8
    GO:0000287 ... B3PDB1 N/A
    194240 3v4e:A (1.95) BS01 COA 2.3.1.- GO:0008870 ... Q5HCZ5 23963951
    194241 3v4e:A (1.95) BS02 COA 2.3.1.- GO:0008870 ... Q5HCZ5 23963951
    194242 3v4e:B (1.95) BS01 COA 2.3.1.- GO:0008870 ... Q5HCZ5 23963951
    194243 3v4e:B (1.95) BS02 COA 2.3.1.- GO:0008870 ... Q5HCZ5 23963951
    194244 3v4e:C (1.95) BS01 COA 2.3.1.- GO:0008870 ... Q5HCZ5 23963951
    194245 3v4e:C (1.95) BS02 COA 2.3.1.- GO:0008870 ... Q5HCZ5 23963951
    194246 3v4f:A (1.391) BS01 CA 3.6.5.2 GO:0003924 ... P20171 22845804
    194247 3v4f:A (1.391) BS02 MG 3.6.5.2 GO:0003924 ... P20171 22845804
    194248 3v4f:A (1.391) BS03 CA 3.6.5.2 GO:0003924 ... P20171 22845804
    194249 3v4f:A (1.391) BS04 GNP 3.6.5.2 GO:0003924 ... P20171 22845804
    194250 3v4i:A (2.7983) BS01 dna 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 22266819
    194251 3v4i:A (2.7983) BS02 dna 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 22266819
    194252 3v4i:A (2.7983) BS03 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 22266819
    194253 3v4i:A (2.7983) BS04 AZT 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 22266819
    194254 3v4i:C (2.7983) BS01 dna 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 22266819
    194255 3v4i:C (2.7983) BS02 dna 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 22266819
    194256 3v4i:C (2.7983) BS03 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 22266819
    194257 3v4i:C (2.7983) BS04 AZT 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 22266819
    194258 3v4j:A (2.04) BS01 ZN 3.5.4.38 GO:0008270 ... Q9HC16 22181350
    194259 3v4j:A (2.04) BS02 ZN 3.5.4.38 GO:0008270 ... Q9HC16 22181350
    194260 3v4j:A (2.04) BS03 PQR 3.5.4.38 GO:0008270 ... Q9HC16 22181350
    194261 3v4j:B (2.04) BS01 ZN 3.5.4.38 GO:0008270 ... Q9HC16 22181350
    194262 3v4j:B (2.04) BS02 ZN 3.5.4.38 GO:0008270 ... Q9HC16 22181350
    194263 3v4j:B (2.04) BS03 PQR 3.5.4.38 GO:0008270 ... Q9HC16 22181350
    194264 3v4k:A (1.38) BS01 MG 3.5.4.38 GO:0008270 ... Q9HC16 22181350
    194265 3v4k:A (1.38) BS02 ZN 3.5.4.38 GO:0008270 ... Q9HC16 22181350
    194266 3v4k:A (1.38) BS03 ZN 3.5.4.38 GO:0008270 ... Q9HC16 22181350
    194267 3v4k:B (1.38) BS01 MG 3.5.4.38 GO:0008270 ... Q9HC16 22181350
    194268 3v4k:B (1.38) BS02 ZN 3.5.4.38 GO:0008270 ... Q9HC16 22181350
    194269 3v4k:B (1.38) BS03 ZN 3.5.4.38 GO:0008270 ... Q9HC16 22181350
    194270 3v4l:A (3.15) BS01 peptide 3.4.22.- GO:0004197 ... Q2TBA3 22366302
    194271 3v4o:A (2.1) BS01 peptide 3.4.22.- GO:0004197 ... Q9UDY8 22366302
    194272 3v4p:A (3.15) BS01 CA ? GO:0007155 ... P13612 22232704
    194273 3v4p:A (3.15) BS02 CA ? GO:0007155 ... P13612 22232704
    194274 3v4p:A (3.15) BS03 CA ? GO:0007155 ... P13612 22232704
    194275 3v4p:B (3.15) BS01 MG ? N/A P26010 22232704
    194276 3v4p:B (3.15) BS02 CA ? N/A P26010 22232704
    194277 3v4p:B (3.15) BS03 CA ? N/A P26010 22232704
    194278 3v4p:C (3.15) BS01 CA ? GO:0007155 ... P13612 22232704
    194279 3v4p:C (3.15) BS02 CA ? GO:0007155 ... P13612 22232704
    194280 3v4p:C (3.15) BS03 CA ? GO:0007155 ... P13612 22232704
    194281 3v4p:D (3.15) BS01 MG ? N/A P26010 22232704
    194282 3v4p:D (3.15) BS02 CA ? N/A P26010 22232704
    194283 3v4p:D (3.15) BS03 CA ? N/A P26010 22232704
    194284 3v4r:A (3.25) BS01 dna 3.1.21.5 GO:0000715 ... P37954 22753105
    194285 3v4r:A (3.25) BS02 ADP 3.1.21.5 GO:0000715 ... P37954 22753105
    194286 3v4r:B (3.25) BS01 dna 3.1.21.5 GO:0000715 ... P37954 22753105
    194287 3v4r:B (3.25) BS02 ADP 3.1.21.5 GO:0000715 ... P37954 22753105
    194288 3v4s:A (2.02) BS01 ADP N/A GO:0004638 ... N/A 25372694
    194289 3v4s:A (2.02) BS02 CO3 N/A GO:0004638 ... N/A 25372694
    194290 3v4s:B (2.02) BS01 ATP N/A GO:0004638 ... N/A 25372694
    194291 3v4s:B (2.02) BS02 MG N/A GO:0004638 ... N/A 25372694
    194292 3v4s:B (2.02) BS03 MG N/A GO:0004638 ... N/A 25372694
    194293 3v4s:B (2.02) BS04 CO3 N/A GO:0004638 ... N/A 25372694
    194294 3v4t:A (2.5) BS01 UD1 2.5.1.7 GO:0003824 ... P33038 22378791
    194295 3v4t:B (2.5) BS01 UD1 2.5.1.7 GO:0003824 ... P33038 22378791
    194296 3v4t:C (2.5) BS01 UD1 2.5.1.7 GO:0003824 ... P33038 22378791
    194297 3v4t:D (2.5) BS01 UD1 2.5.1.7 GO:0003824 ... P33038 22378791
    194298 3v4t:E (2.5) BS01 UD1 2.5.1.7 GO:0003824 ... P33038 22378791
    194299 3v4t:F (2.5) BS01 UD1 2.5.1.7 GO:0003824 ... P33038 22378791
    194300 3v4t:G (2.5) BS01 UD1 2.5.1.7 GO:0003824 ... P33038 22378791
    194301 3v4t:H (2.5) BS01 UD1 2.5.1.7 GO:0003824 ... P33038 22378791
    194302 3v4u:H (1.64) BS01 peptide N/A N/A N/A 22753930
    194303 3v4u:L (1.64) BS01 peptide ? GO:0005576 ... A2NHM3 22753930
    194304 3v4v:A (3.1) BS01 CA ? GO:0007155 ... P13612 22232704
    194305 3v4v:A (3.1) BS02 CA ? GO:0007155 ... P13612 22232704
    194306 3v4v:A (3.1) BS03 CA ? GO:0007155 ... P13612 22232704
    194307 3v4v:A (3.1) BS04 0DU ? GO:0007155 ... P13612 22232704 BindingDB: IC50=32nM
    194308 3v4v:B (3.1) BS01 MG ? N/A P26010 22232704
    194309 3v4v:B (3.1) BS02 CA ? N/A P26010 22232704
    194310 3v4v:B (3.1) BS03 CA ? N/A P26010 22232704
    194311 3v4v:B (3.1) BS04 0DU ? N/A P26010 22232704 BindingDB: IC50=42nM
    194312 3v4v:C (3.1) BS01 CA ? GO:0007155 ... P13612 22232704
    194313 3v4v:C (3.1) BS02 CA ? GO:0007155 ... P13612 22232704
    194314 3v4v:C (3.1) BS03 CA ? GO:0007155 ... P13612 22232704
    194315 3v4v:C (3.1) BS04 0DU ? GO:0007155 ... P13612 22232704 BindingDB: IC50=32nM
    194316 3v4v:D (3.1) BS01 MG ? N/A P26010 22232704
    194317 3v4v:D (3.1) BS02 CA ? N/A P26010 22232704
    194318 3v4v:D (3.1) BS03 CA ? N/A P26010 22232704
    194319 3v4v:D (3.1) BS04 0DU ? N/A P26010 22232704 BindingDB: IC50=42nM
    194320 3v4x:A (1.952) BS01 F24 2.3.3.10 GO:0004421 ... Q9FD71 22510038
    194321 3v4x:B (1.952) BS01 F24 2.3.3.10 GO:0004421 ... Q9FD71 22510038
    194322 3v4x:C (1.952) BS01 F24 2.3.3.10 GO:0004421 ... Q9FD71 22510038
    194323 3v4x:D (1.952) BS01 F24 2.3.3.10 GO:0004421 ... Q9FD71 22510038
    194324 3v4y:A (2.098) BS01 MN 3.1.3.16 GO:0000164 ... P62136 22940584
    194325 3v4y:A (2.098) BS02 MN 3.1.3.16 GO:0000164 ... P62136 22940584
    194326 3v4y:C (2.098) BS01 MN 3.1.3.16 GO:0000164 ... P62136 22940584
    194327 3v4y:C (2.098) BS02 MN 3.1.3.16 GO:0000164 ... P62136 22940584
    194328 3v4y:E (2.098) BS01 MN 3.1.3.16 GO:0000164 ... P62136 22940584
    194329 3v4y:E (2.098) BS02 MN 3.1.3.16 GO:0000164 ... P62136 22940584
    194330 3v4y:G (2.098) BS01 MN 3.1.3.16 GO:0000164 ... P62136 22940584
    194331 3v4y:G (2.098) BS02 MN 3.1.3.16 GO:0000164 ... P62136 22940584
    194332 3v50:A (1.45) BS01 SA2 3.5.2.6 GO:0008800 ... P0AD64 22438274
    194333 3v50:A (1.45) BS02 MA4 3.5.2.6 GO:0008800 ... P0AD64 22438274
    194334 3v51:A (1.95) BS01 I76 2.7.11.17 GO:0000166 ... Q9BJF5 22369268 BindingDB: IC50=5.50nM
    194335 3v52:H (1.697) BS01 peptide N/A N/A N/A 22753930
    194336 3v52:L (1.697) BS01 peptide ? GO:0005576 ... A2NHM3 22753930
    194337 3v56:A (3.0) BS01 peptide ? GO:0005164 ... Q9Y275 22505257
    194338 3v56:B (3.0) BS01 peptide ? GO:0005164 ... Q9Y275 22505257
    194339 3v56:C (3.0) BS01 peptide ? GO:0005164 ... Q9Y275 22505257
    194340 3v56:D (3.0) BS01 peptide ? GO:0005164 ... Q9Y275 22505257
    194341 3v56:E (3.0) BS01 peptide ? GO:0005164 ... Q9Y275 22505257
    194342 3v56:F (3.0) BS01 peptide ? GO:0005164 ... Q9Y275 22505257
    194343 3v56:F (3.0) BS02 peptide ? GO:0005164 ... Q9Y275 22505257
    194344 3v57:A (1.7) BS01 PEB ? GO:0009535 ... P11392 22863205
    194345 3v57:A (1.7) BS02 PEB ? GO:0009535 ... P11392 22863205
    194346 3v57:A (1.7) BS03 PEB ? GO:0009535 ... P11392 22863205
    194347 3v57:A (1.7) BS04 PEB ? GO:0009535 ... P11392 22863205
    194348 3v57:B (1.7) BS01 PEB ? GO:0009535 ... P11393 22863205
    194349 3v57:B (1.7) BS02 PEB ? GO:0009535 ... P11393 22863205
    194350 3v57:B (1.7) BS03 PEB ? GO:0009535 ... P11393 22863205
    194351 3v57:C (1.7) BS01 PEB ? GO:0009535 ... P11392 22863205
    194352 3v57:C (1.7) BS02 PEB ? GO:0009535 ... P11392 22863205
    194353 3v57:C (1.7) BS03 PEB ? GO:0009535 ... P11392 22863205
    194354 3v57:D (1.7) BS01 PEB ? GO:0009535 ... P11393 22863205
    194355 3v57:D (1.7) BS02 PEB ? GO:0009535 ... P11393 22863205
    194356 3v57:D (1.7) BS03 PEB ? GO:0009535 ... P11393 22863205
    194357 3v58:A (1.85) BS01 PEB ? GO:0009535 ... P11392 22863205
    194358 3v58:A (1.85) BS02 PEB ? GO:0009535 ... P11392 22863205
    194359 3v58:A (1.85) BS03 PEB ? GO:0009535 ... P11392 22863205
    194360 3v58:A (1.85) BS04 PEB ? GO:0009535 ... P11392 22863205
    194361 3v58:B (1.85) BS01 PEB ? GO:0009535 ... P11393 22863205
    194362 3v58:B (1.85) BS02 PEB ? GO:0009535 ... P11393 22863205
    194363 3v58:B (1.85) BS03 PEB ? GO:0009535 ... P11393 22863205
    194364 3v58:C (1.85) BS01 PEB ? GO:0009535 ... P11392 22863205
    194365 3v58:C (1.85) BS02 PEB ? GO:0009535 ... P11392 22863205
    194366 3v58:C (1.85) BS03 PEB ? GO:0009535 ... P11392 22863205
    194367 3v58:C (1.85) BS04 PEB ? GO:0009535 ... P11392 22863205
    194368 3v58:D (1.85) BS01 PEB ? GO:0009535 ... P11393 22863205
    194369 3v58:D (1.85) BS02 PEB ? GO:0009535 ... P11393 22863205
    194370 3v58:D (1.85) BS03 PEB ? GO:0009535 ... P11393 22863205
    194371 3v5a:A (1.44) BS01 peptide 3.4.21.- GO:0005576 ... P24627 N/A
    194372 3v5a:A (1.44) BS02 FE 3.4.21.- GO:0005576 ... P24627 N/A
    194373 3v5a:A (1.44) BS03 CO3 3.4.21.- GO:0005576 ... P24627 N/A
    194374 3v5a:A (1.44) BS04 CO3 3.4.21.- GO:0005576 ... P24627 N/A
    194375 3v5c:A (1.53) BS01 MG ? N/A A0ACD6B8H0 N/A
    194376 3v5c:B (1.53) BS01 MG ? N/A A0ACD6B8H0 N/A
    194377 3v5c:B (1.53) BS02 MG ? N/A A0ACD6B8H0 N/A
    194378 3v5c:C (1.53) BS01 MG ? N/A A0ACD6B8H0 N/A
    194379 3v5c:D (1.53) BS01 MG ? N/A A0ACD6B8H0 N/A
    194380 3v5c:D (1.53) BS02 MG ? N/A A0ACD6B8H0 N/A
    194381 3v5d:A (2.0) BS01 peptide ? N/A P04439 N/A
    194382 3v5d:D (2.0) BS01 peptide ? N/A P04439 N/A
    194383 3v5f:A (2.0) BS01 MG ? N/A A0ACD6B8H0 N/A
    194384 3v5f:A (2.0) BS02 MG ? N/A A0ACD6B8H0 N/A
    194385 3v5g:A (1.5) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 22775345
    194386 3v5g:A (1.5) BS02 0F3 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 22775345 MOAD: Ki=74nM
    BindingDB: Ki=74nM
    194387 3v5g:A (1.5) BS03 0F3 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 22775345 MOAD: Ki=74nM
    BindingDB: Ki=74nM
    194388 3v5g:A (1.5) BS04 0F3 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 22775345 MOAD: Ki=74nM
    BindingDB: Ki=74nM
    194389 3v5g:A (1.5) BS05 HGB 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 22775345
    194390 3v5h:A (1.63) BS01 peptide ? N/A P04439 N/A
    194391 3v5h:D (1.63) BS01 peptide ? N/A P04439 N/A
    194392 3v5j:A (2.59) BS01 0F2 2.7.10.2 GO:0004672 ... Q08881 22464456 BindingDB: IC50=10.9nM
    194393 3v5j:B (2.59) BS01 0F2 2.7.10.2 GO:0004672 ... Q08881 22464456 BindingDB: IC50=10.9nM
    194394 3v5k:A (2.31) BS01 peptide ? N/A P04439 N/A
    194395 3v5k:D (2.31) BS01 peptide ? N/A P04439 N/A
    194396 3v5l:A (1.86) BS01 0G1 2.7.10.2 GO:0004672 ... Q08881 22464456 MOAD: ic50=7nM
    BindingDB: IC50=7nM
    194397 3v5l:B (1.86) BS01 0G1 2.7.10.2 GO:0004672 ... Q08881 22464456 MOAD: ic50=7nM
    BindingDB: IC50=7nM
    194398 3v5l:C (1.86) BS01 0G1 2.7.10.2 GO:0004672 ... Q08881 22464456 MOAD: ic50=7nM
    BindingDB: IC50=7nM
    194399 3v5l:D (1.86) BS01 0G1 2.7.10.2 GO:0004672 ... Q08881 22464456 MOAD: ic50=7nM
    BindingDB: IC50=7nM
    194400 3v5m:A (1.3) BS01 MA4 3.5.2.6 GO:0008800 ... P0AD64 22438274

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).