SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    194801 3vaf:B (2.49) BS02 rna ? GO:0003676 ... P26368 23376934
    194802 3vaf:B (2.49) BS03 CPQ ? GO:0003676 ... P26368 23376934
    194803 3vag:A (2.19) BS01 rna ? GO:0003676 ... P26368 23376934
    194804 3vag:B (2.19) BS01 rna ? GO:0003676 ... P26368 23376934
    194805 3vag:B (2.19) BS02 rna ? GO:0003676 ... P26368 23376934
    194806 3vah:A (2.5) BS01 rna ? GO:0003676 ... P26368 23376934
    194807 3vah:B (2.5) BS01 rna ? GO:0003676 ... P26368 23376934
    194808 3vah:B (2.5) BS02 rna ? GO:0003676 ... P26368 23376934
    194809 3vai:A (2.2) BS01 rna ? GO:0003676 ... P26368 23376934
    194810 3vai:B (2.2) BS01 rna ? GO:0003676 ... P26368 23376934
    194811 3vai:B (2.2) BS02 rna ? GO:0003676 ... P26368 23376934
    194812 3vaj:A (1.9) BS01 rna ? GO:0003676 ... P26368 23376934
    194813 3vaj:B (1.9) BS01 rna ? GO:0003676 ... P26368 23376934
    194814 3vaj:B (1.9) BS02 rna ? GO:0003676 ... P26368 23376934
    194815 3vaj:B (1.9) BS03 CPQ ? GO:0003676 ... P26368 23376934
    194816 3vak:A (2.17) BS01 rna ? GO:0003676 ... P26368 23376934
    194817 3vak:B (2.17) BS01 rna ? GO:0003676 ... P26368 23376934
    194818 3vak:B (2.17) BS02 rna ? GO:0003676 ... P26368 23376934
    194819 3val:A (2.5) BS01 rna ? GO:0003676 ... P26368 23376934
    194820 3val:A (2.5) BS02 rna ? GO:0003676 ... P26368 23376934
    194821 3val:B (2.5) BS01 rna ? GO:0003676 ... P26368 23376934
    194822 3val:D (2.5) BS01 rna ? GO:0003676 ... P26368 23376934
    194823 3val:I (2.5) BS01 rna ? GO:0003676 ... P26368 23376934
    194824 3val:I (2.5) BS02 rna ? GO:0003676 ... P26368 23376934
    194825 3vam:A (2.4) BS01 rna ? GO:0003676 ... P26368 23376934
    194826 3vam:B (2.4) BS01 rna ? GO:0003676 ... P26368 23376934
    194827 3vam:B (2.4) BS02 rna ? GO:0003676 ... P26368 23376934
    194828 3vap:A (2.66) BS01 0FY 2.7.11.1 GO:0000212 ... O14965 22503250
    194829 3vaq:A (2.44) BS01 ADN N/A GO:0004001 ... N/A 23275171
    194830 3vaq:B (2.44) BS01 ADN N/A GO:0004001 ... N/A 23275171
    194831 3var:A (2.25) BS01 ZN 3.4.11.21 GO:0004177 ... Q2HJH1 22356908
    194832 3var:A (2.25) BS02 ZN 3.4.11.21 GO:0004177 ... Q2HJH1 22356908
    194833 3vas:A (2.26) BS01 ADN N/A GO:0004001 ... N/A 23275171
    194834 3vas:B (2.26) BS01 ADN N/A GO:0004001 ... N/A 23275171
    194835 3vat:A (2.1) BS01 ZN 3.4.11.21 GO:0004177 ... Q2HJH1 22356908
    194836 3vat:A (2.1) BS02 MG 3.4.11.21 GO:0004177 ... Q2HJH1 22356908
    194837 3vau:A (1.7) BS01 NTE 1.11.1.-
    1.7.-.-
    GO:0003009 ... P68082 22430128
    194838 3vau:A (1.7) BS02 NO2 1.11.1.-
    1.7.-.-
    GO:0003009 ... P68082 22430128
    194839 3vaw:A (1.55) BS01 FK5 5.2.1.8 GO:0003755 ... Q12306
    Q3JK38
    24366729
    194840 3vax:A (2.4) BS01 PLP ? GO:0031071 ... A7TUX7 22570733
    194841 3vax:B (2.4) BS01 PLP ? GO:0031071 ... A7TUX7 22570733
    194842 3vay:A (1.979) BS01 MG ? GO:0009231 ... Q88B12 23695255
    194843 3vay:B (1.979) BS01 MG ? GO:0009231 ... Q88B12 23695255
    194844 3vaz:A (3.19) BS01 NAD 1.2.1.12 GO:0004365 ... Q6GIL8 N/A
    194845 3vaz:A (3.19) BS02 DGY 1.2.1.12 GO:0004365 ... Q6GIL8 N/A
    194846 3vaz:B (3.19) BS01 NAD 1.2.1.12 GO:0004365 ... Q6GIL8 N/A
    194847 3vaz:O (3.19) BS01 NAD 1.2.1.12 GO:0004365 ... Q6GIL8 N/A
    194848 3vaz:P (3.19) BS01 NAD 1.2.1.12 GO:0004365 ... Q6GIL8 N/A
    194849 3vaz:Q (3.19) BS01 NAD 1.2.1.12 GO:0004365 ... Q6GIL8 N/A
    194850 3vaz:R (3.19) BS01 NAD 1.2.1.12 GO:0004365 ... Q6GIL8 N/A
    194851 3vb0:A (2.1) BS01 FE2 N/A GO:0003824 ... N/A N/A
    194852 3vb0:B (2.1) BS01 FE2 N/A GO:0003824 ... N/A N/A
    194853 3vb0:C (2.1) BS01 FE2 N/A GO:0003824 ... N/A N/A
    194854 3vb0:D (2.1) BS01 FE2 N/A GO:0003824 ... N/A N/A
    194855 3vb4:A (2.2) BS01 peptide 2.7.7.50
    3.4.19.12
    3.4.22.-
    3.4.22.69
    GO:0008233 ... P0C6U8 23202846
    194856 3vb4:B (2.2) BS01 peptide 2.7.7.50
    3.4.19.12
    3.4.22.-
    3.4.22.69
    GO:0008233 ... P0C6U8 23202846
    194857 3vb5:A (1.95) BS01 peptide 2.7.7.50
    3.4.19.12
    3.4.22.-
    3.4.22.69
    GO:0008233 ... P0C6U8 23202846
    194858 3vb5:B (1.95) BS01 peptide 2.7.7.50
    3.4.19.12
    3.4.22.-
    3.4.22.69
    GO:0008233 ... P0C6U8 23202846
    194859 3vb6:A (2.5) BS01 peptide 2.7.7.50
    3.4.19.12
    3.4.22.-
    3.4.22.69
    GO:0008233 ... P0C6U8 23202846
    194860 3vb6:B (2.5) BS01 peptide 2.7.7.50
    3.4.19.12
    3.4.22.-
    3.4.22.69
    GO:0008233 ... P0C6U8 23202846
    194861 3vb7:A (1.95) BS01 peptide 2.7.7.50
    3.4.19.12
    3.4.22.-
    3.4.22.69
    GO:0008233 ... P0C6U8 23202846
    194862 3vb7:B (1.95) BS01 peptide 2.7.7.50
    3.4.19.12
    3.4.22.-
    3.4.22.69
    GO:0008233 ... P0C6U8 23202846
    194863 3vb9:B (2.1) BS01 MG ? N/A Q87I71 N/A
    194864 3vb9:D (2.1) BS01 MG ? N/A Q87I71 N/A
    194865 3vbd:A (1.05) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 22443141
    194866 3vbd:A (1.05) BS02 0FZ 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 22443141 MOAD: Ki=8.6nM
    BindingDB: Ki=8.6nM
    194867 3vbe:A (2.5) BS01 PLP 2.5.1.47
    4.4.1.9
    GO:0004124 ... I1L6I6 22739827
    194868 3vbe:B (2.5) BS01 PLP 2.5.1.47
    4.4.1.9
    GO:0004124 ... I1L6I6 22739827
    194869 3vbe:C (2.5) BS01 PLP 2.5.1.47
    4.4.1.9
    GO:0004124 ... I1L6I6 22739827
    194870 3vbe:D (2.5) BS01 PLP 2.5.1.47
    4.4.1.9
    GO:0004124 ... I1L6I6 22739827
    194871 3vbf:A (2.6) BS01 AMP 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15
    N/A B2ZUN0 22388738
    194872 3vbg:A (2.8) BS01 03M 2.3.2.27 GO:0005634 ... Q00987 22745160
    194873 3vbg:A (2.8) BS02 03M 2.3.2.27 GO:0005634 ... Q00987 22745160
    194874 3vbg:B (2.8) BS01 03M 2.3.2.27 GO:0005634 ... Q00987 22745160
    194875 3vbg:B (2.8) BS02 03M 2.3.2.27 GO:0005634 ... Q00987 22745160
    194876 3vbg:C (2.8) BS01 03M 2.3.2.27 GO:0005634 ... Q00987 22745160
    194877 3vbg:C (2.8) BS02 03M 2.3.2.27 GO:0005634 ... Q00987 22745160
    194878 3vbg:D (2.8) BS01 03M 2.3.2.27 GO:0005634 ... Q00987 22745160
    194879 3vbg:D (2.8) BS02 03M 2.3.2.27 GO:0005634 ... Q00987 22745160
    194880 3vbi:A (1.8) BS01 COA N/A GO:0016740 ... N/A 22220494
    194881 3vbi:A (1.8) BS02 0FX N/A GO:0016740 ... N/A 22220494
    194882 3vbi:A (1.8) BS03 COA N/A GO:0016740 ... N/A 22220494
    194883 3vbi:A (1.8) BS04 0FX N/A GO:0016740 ... N/A 22220494
    194884 3vbi:C (1.8) BS01 0FX N/A GO:0016740 ... N/A 22220494
    194885 3vbi:C (1.8) BS02 COA N/A GO:0016740 ... N/A 22220494
    194886 3vbi:C (1.8) BS03 0FX N/A GO:0016740 ... N/A 22220494
    194887 3vbi:C (1.8) BS04 COA N/A GO:0016740 ... N/A 22220494
    194888 3vbi:E (1.8) BS01 COA N/A GO:0016740 ... N/A 22220494
    194889 3vbi:E (1.8) BS02 0FX N/A GO:0016740 ... N/A 22220494
    194890 3vbi:E (1.8) BS03 COA N/A GO:0016740 ... N/A 22220494
    194891 3vbi:E (1.8) BS04 0FX N/A GO:0016740 ... N/A 22220494
    194892 3vbj:A (1.8) BS01 TYD N/A GO:0016740 ... N/A 22220494
    194893 3vbj:A (1.8) BS02 3HC N/A GO:0016740 ... N/A 22220494
    194894 3vbj:A (1.8) BS03 TYD N/A GO:0016740 ... N/A 22220494
    194895 3vbj:A (1.8) BS04 3HC N/A GO:0016740 ... N/A 22220494
    194896 3vbj:C (1.8) BS01 TYD N/A GO:0016740 ... N/A 22220494
    194897 3vbj:C (1.8) BS02 3HC N/A GO:0016740 ... N/A 22220494
    194898 3vbj:C (1.8) BS03 TYD N/A GO:0016740 ... N/A 22220494
    194899 3vbj:C (1.8) BS04 3HC N/A GO:0016740 ... N/A 22220494
    194900 3vbj:E (1.8) BS01 TYD N/A GO:0016740 ... N/A 22220494
    194901 3vbj:E (1.8) BS02 3HC N/A GO:0016740 ... N/A 22220494
    194902 3vbj:E (1.8) BS03 TYD N/A GO:0016740 ... N/A 22220494
    194903 3vbj:E (1.8) BS04 3HC N/A GO:0016740 ... N/A 22220494
    194904 3vbk:A (2.2) BS01 COA N/A GO:0016740 ... N/A 22220494
    194905 3vbk:A (2.2) BS02 0FX N/A GO:0016740 ... N/A 22220494
    194906 3vbk:A (2.2) BS03 COA N/A GO:0016740 ... N/A 22220494
    194907 3vbk:A (2.2) BS04 0FX N/A GO:0016740 ... N/A 22220494
    194908 3vbk:C (2.2) BS01 0FX N/A GO:0016740 ... N/A 22220494
    194909 3vbk:C (2.2) BS02 COA N/A GO:0016740 ... N/A 22220494
    194910 3vbk:C (2.2) BS03 0FX N/A GO:0016740 ... N/A 22220494
    194911 3vbk:C (2.2) BS04 BCT N/A GO:0016740 ... N/A 22220494
    194912 3vbk:C (2.2) BS05 COA N/A GO:0016740 ... N/A 22220494
    194913 3vbk:E (2.2) BS01 COA N/A GO:0016740 ... N/A 22220494
    194914 3vbk:E (2.2) BS02 0FX N/A GO:0016740 ... N/A 22220494
    194915 3vbk:E (2.2) BS03 COA N/A GO:0016740 ... N/A 22220494
    194916 3vbk:E (2.2) BS04 0FX N/A GO:0016740 ... N/A 22220494
    194917 3vbl:A (1.9) BS01 COA N/A GO:0016740 ... N/A 22220494
    194918 3vbl:A (1.9) BS02 0FX N/A GO:0016740 ... N/A 22220494
    194919 3vbl:A (1.9) BS03 COA N/A GO:0016740 ... N/A 22220494
    194920 3vbl:A (1.9) BS04 0FX N/A GO:0016740 ... N/A 22220494
    194921 3vbl:C (1.9) BS01 COA N/A GO:0016740 ... N/A 22220494
    194922 3vbl:C (1.9) BS02 0FX N/A GO:0016740 ... N/A 22220494
    194923 3vbl:C (1.9) BS03 COA N/A GO:0016740 ... N/A 22220494
    194924 3vbl:C (1.9) BS04 0FX N/A GO:0016740 ... N/A 22220494
    194925 3vbl:E (1.9) BS01 COA N/A GO:0016740 ... N/A 22220494
    194926 3vbl:E (1.9) BS02 0FX N/A GO:0016740 ... N/A 22220494
    194927 3vbl:E (1.9) BS03 COA N/A GO:0016740 ... N/A 22220494
    194928 3vbl:E (1.9) BS04 0FX N/A GO:0016740 ... N/A 22220494
    194929 3vbm:A (1.9) BS01 COA N/A GO:0016740 ... N/A 22220494
    194930 3vbm:A (1.9) BS02 COA N/A GO:0016740 ... N/A 22220494
    194931 3vbm:A (1.9) BS03 TYD N/A GO:0016740 ... N/A 22220494
    194932 3vbm:A (1.9) BS04 TYD N/A GO:0016740 ... N/A 22220494
    194933 3vbm:C (1.9) BS01 COA N/A GO:0016740 ... N/A 22220494
    194934 3vbm:C (1.9) BS02 TYD N/A GO:0016740 ... N/A 22220494
    194935 3vbm:C (1.9) BS03 COA N/A GO:0016740 ... N/A 22220494
    194936 3vbm:C (1.9) BS04 TYD N/A GO:0016740 ... N/A 22220494
    194937 3vbm:E (1.9) BS01 COA N/A GO:0016740 ... N/A 22220494
    194938 3vbm:E (1.9) BS02 COA N/A GO:0016740 ... N/A 22220494
    194939 3vbm:E (1.9) BS03 TYD N/A GO:0016740 ... N/A 22220494
    194940 3vbm:E (1.9) BS04 TYD N/A GO:0016740 ... N/A 22220494
    194941 3vbn:A (2.5) BS01 COA N/A GO:0016740 ... N/A 22220494
    194942 3vbn:A (2.5) BS02 TYD N/A GO:0016740 ... N/A 22220494
    194943 3vbn:A (2.5) BS03 COA N/A GO:0016740 ... N/A 22220494
    194944 3vbn:A (2.5) BS04 TYD N/A GO:0016740 ... N/A 22220494
    194945 3vbn:C (2.5) BS01 TYD N/A GO:0016740 ... N/A 22220494
    194946 3vbn:C (2.5) BS02 COA N/A GO:0016740 ... N/A 22220494
    194947 3vbn:C (2.5) BS03 TYD N/A GO:0016740 ... N/A 22220494
    194948 3vbn:C (2.5) BS04 COA N/A GO:0016740 ... N/A 22220494
    194949 3vbn:E (2.5) BS01 COA N/A GO:0016740 ... N/A 22220494
    194950 3vbn:E (2.5) BS02 TYD N/A GO:0016740 ... N/A 22220494
    194951 3vbn:E (2.5) BS03 COA N/A GO:0016740 ... N/A 22220494
    194952 3vbn:E (2.5) BS04 TYD N/A GO:0016740 ... N/A 22220494
    194953 3vbp:A (2.3) BS01 COA N/A GO:0016740 ... N/A 22220494
    194954 3vbp:A (2.3) BS02 TYD N/A GO:0016740 ... N/A 22220494
    194955 3vbp:A (2.3) BS03 COA N/A GO:0016740 ... N/A 22220494
    194956 3vbp:A (2.3) BS04 TYD N/A GO:0016740 ... N/A 22220494
    194957 3vbp:C (2.3) BS01 TYD N/A GO:0016740 ... N/A 22220494
    194958 3vbp:C (2.3) BS02 COA N/A GO:0016740 ... N/A 22220494
    194959 3vbp:C (2.3) BS03 TYD N/A GO:0016740 ... N/A 22220494
    194960 3vbp:C (2.3) BS04 COA N/A GO:0016740 ... N/A 22220494
    194961 3vbp:E (2.3) BS01 COA N/A GO:0016740 ... N/A 22220494
    194962 3vbp:E (2.3) BS02 TYD N/A GO:0016740 ... N/A 22220494
    194963 3vbp:E (2.3) BS03 COA N/A GO:0016740 ... N/A 22220494
    194964 3vbp:E (2.3) BS04 TYD N/A GO:0016740 ... N/A 22220494
    194965 3vbq:A (1.85) BS01 0F5 2.7.11.1 GO:0004672 ... P11309 22339127 MOAD: ic50=470pM
    194966 3vbt:A (2.23) BS01 0F9 2.7.11.1 GO:0004672 ... P11309 22339127 MOAD: ic50=37uM
    BindingDB: IC50=37000nM
    194967 3vbv:A (2.08) BS01 0FK 2.7.11.1 GO:0004672 ... P11309 22339127 MOAD: ic50=10uM
    BindingDB: IC50=10000nM
    194968 3vbw:A (2.48) BS01 0FN 2.7.11.1 GO:0004672 ... P11309 22339127 MOAD: ic50=6uM
    BindingDB: IC50=6000nM
    194969 3vbx:A (2.03) BS01 0FO 2.7.11.1 GO:0004672 ... P11309 22339127 MOAD: ic50=17uM
    BindingDB: IC50=17000nM
    194970 3vby:A (2.27) BS01 0FR 2.7.11.1 GO:0004672 ... P11309 22339127 MOAD: ic50=28uM
    BindingDB: IC50=28000nM
    194971 3vc1:A (1.82) BS01 SAH 2.1.1.255 GO:0000287 ... Q9F1Y5 22455498
    194972 3vc1:A (1.82) BS02 GST 2.1.1.255 GO:0000287 ... Q9F1Y5 22455498
    194973 3vc1:B (1.82) BS01 SAH 2.1.1.255 GO:0000287 ... Q9F1Y5 22455498
    194974 3vc1:B (1.82) BS02 GST 2.1.1.255 GO:0000287 ... Q9F1Y5 22455498
    194975 3vc1:C (1.82) BS01 SAH 2.1.1.255 GO:0000287 ... Q9F1Y5 22455498
    194976 3vc1:C (1.82) BS02 GST 2.1.1.255 GO:0000287 ... Q9F1Y5 22455498
    194977 3vc1:D (1.82) BS01 SAH 2.1.1.255 GO:0000287 ... Q9F1Y5 22455498
    194978 3vc1:D (1.82) BS02 GST 2.1.1.255 GO:0000287 ... Q9F1Y5 22455498
    194979 3vc1:E (1.82) BS01 SAH 2.1.1.255 GO:0000287 ... Q9F1Y5 22455498
    194980 3vc1:E (1.82) BS02 GST 2.1.1.255 GO:0000287 ... Q9F1Y5 22455498
    194981 3vc1:F (1.82) BS01 SAH 2.1.1.255 GO:0000287 ... Q9F1Y5 22455498
    194982 3vc1:F (1.82) BS02 GST 2.1.1.255 GO:0000287 ... Q9F1Y5 22455498
    194983 3vc1:G (1.82) BS01 SAH 2.1.1.255 GO:0000287 ... Q9F1Y5 22455498
    194984 3vc1:G (1.82) BS02 GST 2.1.1.255 GO:0000287 ... Q9F1Y5 22455498
    194985 3vc1:H (1.82) BS01 SAH 2.1.1.255 GO:0000287 ... Q9F1Y5 22455498
    194986 3vc1:H (1.82) BS02 GST 2.1.1.255 GO:0000287 ... Q9F1Y5 22455498
    194987 3vc1:I (1.82) BS01 SAH 2.1.1.255 GO:0000287 ... Q9F1Y5 22455498
    194988 3vc1:I (1.82) BS02 GST 2.1.1.255 GO:0000287 ... Q9F1Y5 22455498
    194989 3vc1:J (1.82) BS01 SAH 2.1.1.255 GO:0000287 ... Q9F1Y5 22455498
    194990 3vc1:J (1.82) BS02 GST 2.1.1.255 GO:0000287 ... Q9F1Y5 22455498
    194991 3vc1:K (1.82) BS01 SAH 2.1.1.255 GO:0000287 ... Q9F1Y5 22455498
    194992 3vc1:K (1.82) BS02 GST 2.1.1.255 GO:0000287 ... Q9F1Y5 22455498
    194993 3vc1:L (1.82) BS01 SAH 2.1.1.255 GO:0000287 ... Q9F1Y5 22455498
    194994 3vc1:L (1.82) BS02 GST 2.1.1.255 GO:0000287 ... Q9F1Y5 22455498
    194995 3vc2:A (2.046) BS01 SAH 2.1.1.255 GO:0000287 ... Q9F1Y5 22455498
    194996 3vc2:A (2.046) BS02 GPP 2.1.1.255 GO:0000287 ... Q9F1Y5 22455498
    194997 3vc2:B (2.046) BS01 SAH 2.1.1.255 GO:0000287 ... Q9F1Y5 22455498
    194998 3vc2:C (2.046) BS01 SAH 2.1.1.255 GO:0000287 ... Q9F1Y5 22455498
    194999 3vc2:D (2.046) BS01 SAH 2.1.1.255 GO:0000287 ... Q9F1Y5 22455498
    195000 3vc2:D (2.046) BS02 GPP 2.1.1.255 GO:0000287 ... Q9F1Y5 22455498

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).