SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    195001 3vc2:E (2.046) BS01 SAH 2.1.1.255 GO:0000287 ... Q9F1Y5 22455498
    195002 3vc2:F (2.046) BS01 SAH 2.1.1.255 GO:0000287 ... Q9F1Y5 22455498
    195003 3vc2:G (2.046) BS01 SAH 2.1.1.255 GO:0000287 ... Q9F1Y5 22455498
    195004 3vc2:H (2.046) BS01 SAH 2.1.1.255 GO:0000287 ... Q9F1Y5 22455498
    195005 3vc2:H (2.046) BS02 GPP 2.1.1.255 GO:0000287 ... Q9F1Y5 22455498
    195006 3vc2:I (2.046) BS01 SAH 2.1.1.255 GO:0000287 ... Q9F1Y5 22455498
    195007 3vc2:J (2.046) BS01 SAH 2.1.1.255 GO:0000287 ... Q9F1Y5 22455498
    195008 3vc2:J (2.046) BS02 GPP 2.1.1.255 GO:0000287 ... Q9F1Y5 22455498
    195009 3vc2:K (2.046) BS01 SAH 2.1.1.255 GO:0000287 ... Q9F1Y5 22455498
    195010 3vc2:L (2.046) BS01 SAH 2.1.1.255 GO:0000287 ... Q9F1Y5 22455498
    195011 3vc3:A (1.766) BS01 C6P 2.5.1.47
    4.4.1.9
    GO:0004124 ... I1L6I6 22739827
    195012 3vc3:B (1.766) BS01 C6P 2.5.1.47
    4.4.1.9
    GO:0004124 ... I1L6I6 22739827
    195013 3vc3:C (1.766) BS01 C6P 2.5.1.47
    4.4.1.9
    GO:0004124 ... I1L6I6 22739827
    195014 3vc3:D (1.766) BS01 C6P 2.5.1.47
    4.4.1.9
    GO:0004124 ... I1L6I6 22739827
    195015 3vc3:E (1.766) BS01 C6P 2.5.1.47
    4.4.1.9
    GO:0004124 ... I1L6I6 22739827
    195016 3vc3:F (1.766) BS01 C6P 2.5.1.47
    4.4.1.9
    GO:0004124 ... I1L6I6 22739827
    195017 3vc4:A (2.23) BS01 0FS 2.7.11.1 GO:0004672 ... P11309 22339127 MOAD: ic50=24nM
    BindingDB: IC50=17nM
    195018 3vc6:A (1.64) BS01 MG 4.2.1.40 GO:0008872 ... D6Y7Y6 N/A
    195019 3vca:A (1.59) BS01 FES ? GO:0005506 ... Q92ZP9 22224443
    195020 3vca:A (1.59) BS02 FE ? GO:0005506 ... Q92ZP9 22224443
    195021 3vca:A (1.59) BS03 PRO ? GO:0005506 ... Q92ZP9 22224443
    195022 3vcc:A (1.64) BS01 MG ? N/A A0ACD6B8H0 N/A
    195023 3vcc:A (1.64) BS02 MG ? N/A A0ACD6B8H0 N/A
    195024 3vcc:B (1.64) BS01 MG ? N/A A0ACD6B8H0 N/A
    195025 3vcc:B (1.64) BS02 MG ? N/A A0ACD6B8H0 N/A
    195026 3vcl:A (1.7) BS01 peptide ? N/A P01889 22323539
    195027 3vcm:A (2.93) BS01 peptide 3.4.23.15 GO:0004190 ... P00797 22575890
    195028 3vcm:B (2.93) BS01 peptide 3.4.23.15 GO:0004190 ... P00797 22575890
    195029 3vcn:A (1.45) BS01 MG 4.2.1.8 GO:0000287 ... Q9AAR4 N/A
    195030 3vcn:A (1.45) BS02 CO3 4.2.1.8 GO:0000287 ... Q9AAR4 N/A
    195031 3vcn:C (1.45) BS01 MG 4.2.1.8 GO:0000287 ... Q9AAR4 N/A
    195032 3vcn:C (1.45) BS02 CO3 4.2.1.8 GO:0000287 ... Q9AAR4 N/A
    195033 3vcp:A (2.2) BS01 FES ? GO:0005506 ... Q92ZP9 22224443
    195034 3vcp:A (2.2) BS02 FE ? GO:0005506 ... Q92ZP9 22224443
    195035 3vcp:A (2.2) BS03 PRO ? GO:0005506 ... Q92ZP9 22224443
    195036 3vcr:A (1.84) BS01 PYR 4.1.2.14 GO:0008675 ... D2YW47 23877221
    195037 3vcr:B (1.84) BS01 PYR 4.1.2.14 GO:0008675 ... D2YW47 23877221
    195038 3vcy:A (1.925) BS01 FFQ 2.5.1.7 GO:0003824 ... B5F9P4 22505403
    195039 3vcy:A (1.925) BS02 UD1 2.5.1.7 GO:0003824 ... B5F9P4 22505403
    195040 3vcy:B (1.925) BS01 UD1 2.5.1.7 GO:0003824 ... B5F9P4 22505403
    195041 3vcy:B (1.925) BS02 FFQ 2.5.1.7 GO:0003824 ... B5F9P4 22505403
    195042 3vcy:C (1.925) BS01 UD1 2.5.1.7 GO:0003824 ... B5F9P4 22505403
    195043 3vcy:C (1.925) BS02 FFQ 2.5.1.7 GO:0003824 ... B5F9P4 22505403
    195044 3vcy:D (1.925) BS01 UD1 2.5.1.7 GO:0003824 ... B5F9P4 22505403
    195045 3vcy:D (1.925) BS02 FFQ 2.5.1.7 GO:0003824 ... B5F9P4 22505403
    195046 3vcz:B (1.8) BS01 MG N/A N/A N/A N/A
    195047 3vd0:A (2.95) BS01 dna ? GO:0000976 ... O15350 22474346
    195048 3vd0:A (2.95) BS02 dna ? GO:0000976 ... O15350 22474346
    195049 3vd0:A (2.95) BS03 ZN ? GO:0000976 ... O15350 22474346
    195050 3vd0:B (2.95) BS01 dna ? GO:0000976 ... O15350 22474346
    195051 3vd0:B (2.95) BS02 ZN ? GO:0000976 ... O15350 22474346
    195052 3vd0:C (2.95) BS01 dna ? GO:0000976 ... O15350 22474346
    195053 3vd0:C (2.95) BS02 ZN ? GO:0000976 ... O15350 22474346
    195054 3vd0:D (2.95) BS01 dna ? GO:0000976 ... O15350 22474346
    195055 3vd0:D (2.95) BS02 dna ? GO:0000976 ... O15350 22474346
    195056 3vd0:D (2.95) BS03 ZN ? GO:0000976 ... O15350 22474346
    195057 3vd0:I (2.95) BS01 dna ? GO:0000976 ... O15350 22474346
    195058 3vd0:I (2.95) BS02 dna ? GO:0000976 ... O15350 22474346
    195059 3vd0:I (2.95) BS03 ZN ? GO:0000976 ... O15350 22474346
    195060 3vd0:J (2.95) BS01 dna ? GO:0000976 ... O15350 22474346
    195061 3vd0:J (2.95) BS02 ZN ? GO:0000976 ... O15350 22474346
    195062 3vd0:K (2.95) BS01 dna ? GO:0000976 ... O15350 22474346
    195063 3vd0:K (2.95) BS02 dna ? GO:0000976 ... O15350 22474346
    195064 3vd0:K (2.95) BS03 ZN ? GO:0000976 ... O15350 22474346
    195065 3vd0:L (2.95) BS01 dna ? GO:0000976 ... O15350 22474346
    195066 3vd0:L (2.95) BS02 ZN ? GO:0000976 ... O15350 22474346
    195067 3vd1:A (2.95) BS01 dna ? GO:0000976 ... O15350 22474346
    195068 3vd1:A (2.95) BS02 dna ? GO:0000976 ... O15350 22474346
    195069 3vd1:A (2.95) BS03 ZN ? GO:0000976 ... O15350 22474346
    195070 3vd1:B (2.95) BS01 dna ? GO:0000976 ... O15350 22474346
    195071 3vd1:B (2.95) BS02 dna ? GO:0000976 ... O15350 22474346
    195072 3vd1:B (2.95) BS03 ZN ? GO:0000976 ... O15350 22474346
    195073 3vd1:C (2.95) BS01 dna ? GO:0000976 ... O15350 22474346
    195074 3vd1:C (2.95) BS02 ZN ? GO:0000976 ... O15350 22474346
    195075 3vd1:D (2.95) BS01 dna ? GO:0000976 ... O15350 22474346
    195076 3vd1:D (2.95) BS02 ZN ? GO:0000976 ... O15350 22474346
    195077 3vd1:I (2.95) BS01 dna ? GO:0000976 ... O15350 22474346
    195078 3vd1:I (2.95) BS02 ZN ? GO:0000976 ... O15350 22474346
    195079 3vd1:J (2.95) BS01 dna ? GO:0000976 ... O15350 22474346
    195080 3vd1:J (2.95) BS02 dna ? GO:0000976 ... O15350 22474346
    195081 3vd1:J (2.95) BS03 ZN ? GO:0000976 ... O15350 22474346
    195082 3vd1:K (2.95) BS01 dna ? GO:0000976 ... O15350 22474346
    195083 3vd1:K (2.95) BS02 ZN ? GO:0000976 ... O15350 22474346
    195084 3vd1:L (2.95) BS01 dna ? GO:0000976 ... O15350 22474346
    195085 3vd1:L (2.95) BS02 ZN ? GO:0000976 ... O15350 22474346
    195086 3vd2:A (4.0) BS01 dna ? GO:0000976 ... O15350 22474346
    195087 3vd2:A (4.0) BS02 dna ? GO:0000976 ... O15350 22474346
    195088 3vd2:A (4.0) BS03 ZN ? GO:0000976 ... O15350 22474346
    195089 3vd2:B (4.0) BS01 dna ? GO:0000976 ... O15350 22474346
    195090 3vd2:B (4.0) BS02 dna ? GO:0000976 ... O15350 22474346
    195091 3vd2:B (4.0) BS03 ZN ? GO:0000976 ... O15350 22474346
    195092 3vd2:C (4.0) BS01 dna ? GO:0000976 ... O15350 22474346
    195093 3vd2:C (4.0) BS02 dna ? GO:0000976 ... O15350 22474346
    195094 3vd2:C (4.0) BS03 ZN ? GO:0000976 ... O15350 22474346
    195095 3vd2:D (4.0) BS01 dna ? GO:0000976 ... O15350 22474346
    195096 3vd2:D (4.0) BS02 ZN ? GO:0000976 ... O15350 22474346
    195097 3vd2:I (4.0) BS01 dna ? GO:0000976 ... O15350 22474346
    195098 3vd2:I (4.0) BS02 dna ? GO:0000976 ... O15350 22474346
    195099 3vd2:I (4.0) BS03 ZN ? GO:0000976 ... O15350 22474346
    195100 3vd2:J (4.0) BS01 dna ? GO:0000976 ... O15350 22474346
    195101 3vd2:J (4.0) BS02 dna ? GO:0000976 ... O15350 22474346
    195102 3vd2:J (4.0) BS03 ZN ? GO:0000976 ... O15350 22474346
    195103 3vd3:A (2.8) BS01 MG 3.2.1.23 GO:0000287 ... P00722 22446164
    195104 3vd3:B (2.8) BS01 MG 3.2.1.23 GO:0000287 ... P00722 22446164
    195105 3vd3:B (2.8) BS02 MG 3.2.1.23 GO:0000287 ... P00722 22446164
    195106 3vd3:C (2.8) BS01 MG 3.2.1.23 GO:0000287 ... P00722 22446164
    195107 3vd3:C (2.8) BS02 MG 3.2.1.23 GO:0000287 ... P00722 22446164
    195108 3vd3:D (2.8) BS01 MG 3.2.1.23 GO:0000287 ... P00722 22446164
    195109 3vd3:D (2.8) BS02 MG 3.2.1.23 GO:0000287 ... P00722 22446164
    195110 3vd4:A (2.0) BS01 MG 3.2.1.23 GO:0000287 ... P00722 22446164
    195111 3vd4:A (2.0) BS02 MG 3.2.1.23 GO:0000287 ... P00722 22446164
    195112 3vd4:A (2.0) BS03 IPT 3.2.1.23 GO:0000287 ... P00722 22446164 MOAD: Ki=0.015mM
    BindingDB: Ki=7.6e+4nM
    195113 3vd4:B (2.0) BS01 MG 3.2.1.23 GO:0000287 ... P00722 22446164
    195114 3vd4:B (2.0) BS02 MG 3.2.1.23 GO:0000287 ... P00722 22446164
    195115 3vd4:B (2.0) BS03 IPT 3.2.1.23 GO:0000287 ... P00722 22446164 MOAD: Ki=0.015mM
    BindingDB: Ki=7.6e+4nM
    195116 3vd4:C (2.0) BS01 MG 3.2.1.23 GO:0000287 ... P00722 22446164
    195117 3vd4:C (2.0) BS02 MG 3.2.1.23 GO:0000287 ... P00722 22446164
    195118 3vd4:C (2.0) BS03 IPT 3.2.1.23 GO:0000287 ... P00722 22446164 MOAD: Ki=0.015mM
    BindingDB: Ki=7.6e+4nM
    195119 3vd4:D (2.0) BS01 MG 3.2.1.23 GO:0000287 ... P00722 22446164
    195120 3vd4:D (2.0) BS02 MG 3.2.1.23 GO:0000287 ... P00722 22446164
    195121 3vd4:D (2.0) BS03 IPT 3.2.1.23 GO:0000287 ... P00722 22446164 MOAD: Ki=0.015mM
    BindingDB: Ki=7.6e+4nM
    195122 3vd5:A (2.7) BS01 MG 3.2.1.23 GO:0000287 ... P00722 22446164
    195123 3vd5:A (2.7) BS02 MG 3.2.1.23 GO:0000287 ... P00722 22446164
    195124 3vd5:B (2.7) BS01 MG 3.2.1.23 GO:0000287 ... P00722 22446164
    195125 3vd5:B (2.7) BS02 MG 3.2.1.23 GO:0000287 ... P00722 22446164
    195126 3vd5:C (2.7) BS01 MG 3.2.1.23 GO:0000287 ... P00722 22446164
    195127 3vd5:C (2.7) BS02 MG 3.2.1.23 GO:0000287 ... P00722 22446164
    195128 3vd5:D (2.7) BS01 MG 3.2.1.23 GO:0000287 ... P00722 22446164
    195129 3vd5:D (2.7) BS02 MG 3.2.1.23 GO:0000287 ... P00722 22446164
    195130 3vd6:C (1.98) BS01 dna ? GO:0003700 ... P17679 26234528
    195131 3vd6:C (1.98) BS02 dna ? GO:0003700 ... P17679 26234528
    195132 3vd6:C (1.98) BS03 ZN ? GO:0003700 ... P17679 26234528
    195133 3vd6:C (1.98) BS04 ZN ? GO:0003700 ... P17679 26234528
    195134 3vd6:C (1.98) BS05 ZN ? GO:0003700 ... P17679 26234528
    195135 3vd7:A (2.87) BS01 GTZ 3.2.1.23 GO:0000287 ... P00722 22446164
    195136 3vd7:A (2.87) BS02 MG 3.2.1.23 GO:0000287 ... P00722 22446164
    195137 3vd7:B (2.87) BS01 GTZ 3.2.1.23 GO:0000287 ... P00722 22446164
    195138 3vd7:B (2.87) BS02 MG 3.2.1.23 GO:0000287 ... P00722 22446164
    195139 3vd7:B (2.87) BS03 MG 3.2.1.23 GO:0000287 ... P00722 22446164
    195140 3vd7:C (2.87) BS01 GTZ 3.2.1.23 GO:0000287 ... P00722 22446164
    195141 3vd7:C (2.87) BS02 MG 3.2.1.23 GO:0000287 ... P00722 22446164
    195142 3vd7:C (2.87) BS03 MG 3.2.1.23 GO:0000287 ... P00722 22446164
    195143 3vd7:D (2.87) BS01 GTZ 3.2.1.23 GO:0000287 ... P00722 22446164
    195144 3vd7:D (2.87) BS02 MG 3.2.1.23 GO:0000287 ... P00722 22446164
    195145 3vd8:A (2.0685) BS01 GLC ? GO:0008643 ... O14862
    P0AEY0
    23530044
    195146 3vd8:A (2.0685) BS02 GLC ? GO:0008643 ... O14862
    P0AEY0
    23530044
    195147 3vd8:A (2.0685) BS03 GLC ? GO:0008643 ... O14862
    P0AEY0
    23530044
    195148 3vd8:A (2.0685) BS04 GLC ? GO:0008643 ... O14862
    P0AEY0
    23530044
    195149 3vd9:A (2.05) BS01 MG 3.2.1.23 GO:0000287 ... P00722 22446164
    195150 3vd9:A (2.05) BS02 MG 3.2.1.23 GO:0000287 ... P00722 22446164
    195151 3vd9:A (2.05) BS03 IPT 3.2.1.23 GO:0000287 ... P00722 22446164 MOAD: Ki=0.1mM
    BindingDB: Ki=7.6e+4nM
    195152 3vd9:B (2.05) BS01 MG 3.2.1.23 GO:0000287 ... P00722 22446164
    195153 3vd9:B (2.05) BS02 MG 3.2.1.23 GO:0000287 ... P00722 22446164
    195154 3vd9:B (2.05) BS03 IPT 3.2.1.23 GO:0000287 ... P00722 22446164 MOAD: Ki=0.1mM
    BindingDB: Ki=7.6e+4nM
    195155 3vd9:C (2.05) BS01 MG 3.2.1.23 GO:0000287 ... P00722 22446164
    195156 3vd9:C (2.05) BS02 MG 3.2.1.23 GO:0000287 ... P00722 22446164
    195157 3vd9:C (2.05) BS03 IPT 3.2.1.23 GO:0000287 ... P00722 22446164 MOAD: Ki=0.1mM
    BindingDB: Ki=7.6e+4nM
    195158 3vd9:D (2.05) BS01 MG 3.2.1.23 GO:0000287 ... P00722 22446164
    195159 3vd9:D (2.05) BS02 MG 3.2.1.23 GO:0000287 ... P00722 22446164
    195160 3vd9:D (2.05) BS03 IPT 3.2.1.23 GO:0000287 ... P00722 22446164 MOAD: Ki=0.1mM
    BindingDB: Ki=7.6e+4nM
    195161 3vda:A (2.5) BS01 MG 3.2.1.23 GO:0000287 ... P00722 22446164
    195162 3vda:A (2.5) BS02 MG 3.2.1.23 GO:0000287 ... P00722 22446164
    195163 3vda:B (2.5) BS01 MG 3.2.1.23 GO:0000287 ... P00722 22446164
    195164 3vda:B (2.5) BS02 MG 3.2.1.23 GO:0000287 ... P00722 22446164
    195165 3vda:C (2.5) BS01 MG 3.2.1.23 GO:0000287 ... P00722 22446164
    195166 3vda:C (2.5) BS02 MG 3.2.1.23 GO:0000287 ... P00722 22446164
    195167 3vda:D (2.5) BS01 MG 3.2.1.23 GO:0000287 ... P00722 22446164
    195168 3vda:D (2.5) BS02 MG 3.2.1.23 GO:0000287 ... P00722 22446164
    195169 3vdb:A (2.05) BS01 149 3.2.1.23 GO:0000287 ... P00722 22446164 MOAD: Ki=3.03mM
    195170 3vdb:A (2.05) BS02 MG 3.2.1.23 GO:0000287 ... P00722 22446164
    195171 3vdb:A (2.05) BS03 MG 3.2.1.23 GO:0000287 ... P00722 22446164
    195172 3vdb:B (2.05) BS01 149 3.2.1.23 GO:0000287 ... P00722 22446164 MOAD: Ki=3.03mM
    195173 3vdb:B (2.05) BS02 MG 3.2.1.23 GO:0000287 ... P00722 22446164
    195174 3vdb:B (2.05) BS03 MG 3.2.1.23 GO:0000287 ... P00722 22446164
    195175 3vdb:C (2.05) BS01 149 3.2.1.23 GO:0000287 ... P00722 22446164 MOAD: Ki=3.03mM
    195176 3vdb:C (2.05) BS02 MG 3.2.1.23 GO:0000287 ... P00722 22446164
    195177 3vdb:C (2.05) BS03 MG 3.2.1.23 GO:0000287 ... P00722 22446164
    195178 3vdb:D (2.05) BS01 149 3.2.1.23 GO:0000287 ... P00722 22446164 MOAD: Ki=3.03mM
    195179 3vdb:D (2.05) BS02 MG 3.2.1.23 GO:0000287 ... P00722 22446164
    195180 3vdb:D (2.05) BS03 MG 3.2.1.23 GO:0000287 ... P00722 22446164
    195181 3vdc:A (2.55) BS01 IPT 3.2.1.23 GO:0000287 ... P00722 22446164 BindingDB: Ki=7.6e+4nM
    195182 3vdc:A (2.55) BS02 MG 3.2.1.23 GO:0000287 ... P00722 22446164
    195183 3vdc:A (2.55) BS03 MG 3.2.1.23 GO:0000287 ... P00722 22446164
    195184 3vdc:B (2.55) BS01 IPT 3.2.1.23 GO:0000287 ... P00722 22446164 BindingDB: Ki=7.6e+4nM
    195185 3vdc:B (2.55) BS02 MG 3.2.1.23 GO:0000287 ... P00722 22446164
    195186 3vdc:B (2.55) BS03 MG 3.2.1.23 GO:0000287 ... P00722 22446164
    195187 3vdc:C (2.55) BS01 IPT 3.2.1.23 GO:0000287 ... P00722 22446164 BindingDB: Ki=7.6e+4nM
    195188 3vdc:C (2.55) BS02 MG 3.2.1.23 GO:0000287 ... P00722 22446164
    195189 3vdc:C (2.55) BS03 MG 3.2.1.23 GO:0000287 ... P00722 22446164
    195190 3vdc:D (2.55) BS01 IPT 3.2.1.23 GO:0000287 ... P00722 22446164 BindingDB: Ki=7.6e+4nM
    195191 3vdc:D (2.55) BS02 MG 3.2.1.23 GO:0000287 ... P00722 22446164
    195192 3vdc:D (2.55) BS03 MG 3.2.1.23 GO:0000287 ... P00722 22446164
    195193 3vdd:A (3.2) BS01 BT8 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15
    GO:0005198 ... P04936 24900468
    195194 3vdf:A (1.46) BS01 peptide 3.4.21.- GO:0005576 ... P24627 N/A
    195195 3vdf:A (1.46) BS02 FE 3.4.21.- GO:0005576 ... P24627 N/A
    195196 3vdf:A (1.46) BS03 CO3 3.4.21.- GO:0005576 ... P24627 N/A
    195197 3vdf:A (1.46) BS04 API 3.4.21.- GO:0005576 ... P24627 N/A
    195198 3vdi:A (1.99) BS01 BCL N/A GO:0015979 ... N/A 22457093
    195199 3vdi:A (1.99) BS02 BCL N/A GO:0015979 ... N/A 22457093
    195200 3vdi:A (1.99) BS03 BCL N/A GO:0015979 ... N/A 22457093

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).