SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    195601 3vk5:A (1.39) BS01 FPQ ? GO:0016765 ... A0A011 22431288
    195602 3vk5:A (1.39) BS02 MG ? GO:0016765 ... A0A011 22431288
    195603 3vk5:B (1.39) BS01 MG ? GO:0016765 ... A0A011 22431288
    195604 3vk5:B (1.39) BS02 FPQ ? GO:0016765 ... A0A011 22431288
    195605 3vk6:A (1.9) BS01 ZN 2.3.2.27 GO:0016567 ... Q9JIY2 22252131
    195606 3vk6:A (1.9) BS02 ZN 2.3.2.27 GO:0016567 ... Q9JIY2 22252131
    195607 3vk6:A (1.9) BS03 ZN 2.3.2.27 GO:0016567 ... Q9JIY2 22252131
    195608 3vk7:A (2.1) BS01 dna 3.2.2.23
    4.2.99.18
    GO:0003676 ... Q5UQ00 22170059
    195609 3vk7:A (2.1) BS02 dna 3.2.2.23
    4.2.99.18
    GO:0003676 ... Q5UQ00 22170059
    195610 3vk7:B (2.1) BS01 dna 3.2.2.23
    4.2.99.18
    GO:0003676 ... Q5UQ00 22170059
    195611 3vk7:B (2.1) BS02 dna 3.2.2.23
    4.2.99.18
    GO:0003676 ... Q5UQ00 22170059
    195612 3vk8:A (2.0) BS01 dna 3.2.2.23
    4.2.99.18
    GO:0003676 ... Q5UQ00 22170059
    195613 3vk8:A (2.0) BS02 dna 3.2.2.23
    4.2.99.18
    GO:0003676 ... Q5UQ00 22170059
    195614 3vk8:B (2.0) BS01 dna 3.2.2.23
    4.2.99.18
    GO:0003676 ... Q5UQ00 22170059
    195615 3vk8:B (2.0) BS02 dna 3.2.2.23
    4.2.99.18
    GO:0003676 ... Q5UQ00 22170059
    195616 3vka:A (1.57) BS01 MG ? GO:0016765 ... A0A011 22431288
    195617 3vka:A (1.57) BS02 FPQ ? GO:0016765 ... A0A011 22431288
    195618 3vka:B (1.57) BS01 MG ? GO:0016765 ... A0A011 22431288
    195619 3vka:B (1.57) BS02 FPQ ? GO:0016765 ... A0A011 22431288
    195620 3vkb:A (1.8) BS01 MG ? GO:0016765 ... A0A011 22431288
    195621 3vkb:A (1.8) BS02 MG ? GO:0016765 ... A0A011 22431288
    195622 3vkb:A (1.8) BS03 POP ? GO:0016765 ... A0A011 22431288
    195623 3vkb:A (1.8) BS04 FPS ? GO:0016765 ... A0A011 22431288
    195624 3vkb:B (1.8) BS01 MG ? GO:0016765 ... A0A011 22431288
    195625 3vkb:B (1.8) BS02 MG ? GO:0016765 ... A0A011 22431288
    195626 3vkb:B (1.8) BS03 POP ? GO:0016765 ... A0A011 22431288
    195627 3vkb:B (1.8) BS04 FPS ? GO:0016765 ... A0A011 22431288
    195628 3vkc:A (1.66) BS01 MG ? GO:0016765 ... A0A011 22431288
    195629 3vkc:A (1.66) BS02 FPQ ? GO:0016765 ... A0A011 22431288
    195630 3vkc:B (1.66) BS01 MG ? GO:0016765 ... A0A011 22431288
    195631 3vkc:B (1.66) BS02 POP ? GO:0016765 ... A0A011 22431288
    195632 3vkc:B (1.66) BS03 FPQ ? GO:0016765 ... A0A011 22431288
    195633 3vkd:A (1.66) BS01 MG ? GO:0016765 ... A0A011 22431288
    195634 3vkd:A (1.66) BS02 FPQ ? GO:0016765 ... A0A011 22431288
    195635 3vkd:B (1.66) BS01 MG ? GO:0016765 ... A0A011 22431288
    195636 3vkd:B (1.66) BS02 MG ? GO:0016765 ... A0A011 22431288
    195637 3vkd:B (1.66) BS03 FPQ ? GO:0016765 ... A0A011 22431288
    195638 3vke:A (1.77) BS01 dna ? GO:0003676 ... Q15365 22344691
    195639 3vke:A (1.77) BS02 dna ? GO:0003676 ... Q15365 22344691
    195640 3vke:B (1.77) BS01 dna ? GO:0003676 ... Q15365 22344691
    195641 3vke:C (1.77) BS01 dna ? GO:0003676 ... Q15365 22344691
    195642 3vke:D (1.77) BS01 dna ? GO:0003676 ... Q15365 22344691
    195643 3vkf:C (3.3) BS01 CA ? N/A Q28142 22840401
    195644 3vkf:D (3.3) BS01 CA ? N/A Q28142 22840401
    195645 3vkg:A (2.81) BS01 ADP ? GO:0005524 ... P34036 22398446
    195646 3vkg:A (2.81) BS02 ADP ? GO:0005524 ... P34036 22398446
    195647 3vkg:A (2.81) BS03 ADP ? GO:0005524 ... P34036 22398446
    195648 3vkg:A (2.81) BS04 ADP ? GO:0005524 ... P34036 22398446
    195649 3vkg:A (2.81) BS05 MG ? GO:0005524 ... P34036 22398446
    195650 3vkg:B (2.81) BS01 ADP ? GO:0005524 ... P34036 22398446
    195651 3vkg:B (2.81) BS02 ADP ? GO:0005524 ... P34036 22398446
    195652 3vkg:B (2.81) BS03 ADP ? GO:0005524 ... P34036 22398446
    195653 3vkg:B (2.81) BS04 ADP ? GO:0005524 ... P34036 22398446
    195654 3vkg:B (2.81) BS05 MG ? GO:0005524 ... P34036 22398446
    195655 3vkh:A (3.8) BS01 ADP ? GO:0005524 ... P34036 22398446
    195656 3vkh:A (3.8) BS02 ADP ? GO:0005524 ... P34036 22398446
    195657 3vkh:A (3.8) BS03 ADP ? GO:0005524 ... P34036 22398446
    195658 3vkh:A (3.8) BS04 ADP ? GO:0005524 ... P34036 22398446
    195659 3vkh:B (3.8) BS01 ADP ? GO:0005524 ... P34036 22398446
    195660 3vkh:B (3.8) BS02 ADP ? GO:0005524 ... P34036 22398446
    195661 3vkh:B (3.8) BS03 ADP ? GO:0005524 ... P34036 22398446
    195662 3vkh:B (3.8) BS04 ADP ? GO:0005524 ... P34036 22398446
    195663 3vkj:A (1.7) BS01 FNR 5.3.3.2 GO:0000287 ... P61615 22505674
    195664 3vkj:B (1.7) BS01 FNR 5.3.3.2 GO:0000287 ... P61615 22505674
    195665 3vkj:C (1.7) BS01 FNR 5.3.3.2 GO:0000287 ... P61615 22505674
    195666 3vkj:D (1.7) BS01 FNR 5.3.3.2 GO:0000287 ... P61615 22505674
    195667 3vkk:A (2.0) BS01 MAN 3.2.1.21
    3.2.1.45
    3.2.1.46
    GO:0004336 ... Q9H227 N/A
    195668 3vkk:A (2.0) BS02 MG 3.2.1.21
    3.2.1.45
    3.2.1.46
    GO:0004336 ... Q9H227 N/A
    195669 3vkl:A (2.55) BS01 BGC ? GO:0030246 ... O00214 22913484
    195670 3vkl:A (2.55) BS02 GAL ? GO:0030246 ... O00214 22913484
    195671 3vkl:A (2.55) BS03 BGC ? GO:0030246 ... O00214 22913484
    195672 3vkl:A (2.55) BS04 GAL ? GO:0030246 ... O00214 22913484
    195673 3vkl:B (2.55) BS01 BGC ? GO:0030246 ... O00214 22913484
    195674 3vkl:B (2.55) BS02 GAL ? GO:0030246 ... O00214 22913484
    195675 3vkl:B (2.55) BS03 BGC ? GO:0030246 ... O00214 22913484
    195676 3vkl:B (2.55) BS04 GAL ? GO:0030246 ... O00214 22913484
    195677 3vkm:A (2.98) BS01 BGC ? GO:0030246 ... O00214 22913484
    195678 3vkm:A (2.98) BS02 GAL ? GO:0030246 ... O00214 22913484
    195679 3vkm:A (2.98) BS03 SIA ? GO:0030246 ... O00214 22913484
    195680 3vkm:A (2.98) BS04 BGC ? GO:0030246 ... O00214 22913484
    195681 3vkm:A (2.98) BS05 GAL ? GO:0030246 ... O00214 22913484
    195682 3vkm:B (2.98) BS01 BGC ? GO:0030246 ... O00214 22913484
    195683 3vkm:B (2.98) BS02 GAL ? GO:0030246 ... O00214 22913484
    195684 3vkm:B (2.98) BS03 SIA ? GO:0030246 ... O00214 22913484
    195685 3vkm:B (2.98) BS04 BGC ? GO:0030246 ... O00214 22913484
    195686 3vkm:B (2.98) BS05 GAL ? GO:0030246 ... O00214 22913484
    195687 3vko:A (2.08) BS01 GAL ? GO:0030246 ... O00214 22913484
    195688 3vko:A (2.08) BS02 SIA ? GO:0030246 ... O00214 22913484
    195689 3vko:B (2.08) BS01 GAL ? GO:0030246 ... O00214 22913484
    195690 3vko:B (2.08) BS02 SIA ? GO:0030246 ... O00214 22913484
    195691 3vkp:A (1.4) BS01 SRM 1.7.7.1 GO:0016491 ... Q76KB0 22499059
    195692 3vkp:A (1.4) BS02 SF4 1.7.7.1 GO:0016491 ... Q76KB0 22499059
    195693 3vkp:A (1.4) BS03 NO2 1.7.7.1 GO:0016491 ... Q76KB0 22499059
    195694 3vkq:A (1.6) BS01 SRM 1.7.7.1 GO:0016491 ... Q76KB0 22499059
    195695 3vkq:A (1.6) BS02 SF4 1.7.7.1 GO:0016491 ... Q76KB0 22499059
    195696 3vkq:A (1.6) BS03 NO2 1.7.7.1 GO:0016491 ... Q76KB0 22499059
    195697 3vkr:A (1.6) BS01 SRM 1.7.7.1 GO:0016491 ... Q76KB0 22499059
    195698 3vkr:A (1.6) BS02 SF4 1.7.7.1 GO:0016491 ... Q76KB0 22499059
    195699 3vkr:A (1.6) BS03 NO2 1.7.7.1 GO:0016491 ... Q76KB0 22499059
    195700 3vks:A (1.4) BS01 SRM 1.7.7.1 GO:0016491 ... Q76KB0 22499059
    195701 3vks:A (1.4) BS02 SF4 1.7.7.1 GO:0016491 ... Q76KB0 22499059
    195702 3vkt:A (1.3) BS01 SRM 1.7.7.1 GO:0016491 ... Q76KB0 22499059
    195703 3vkt:A (1.3) BS02 SF4 1.7.7.1 GO:0016491 ... Q76KB0 22499059
    195704 3vkt:A (1.3) BS03 HOA 1.7.7.1 GO:0016491 ... Q76KB0 22499059
    195705 3vkx:A (2.1) BS01 T3 ? GO:0000307 ... P12004 22383522
    195706 3vkz:A (1.84) BS01 IPM 1.1.1.85 GO:0000287 ... Q8E9N3 22349232
    195707 3vkz:A (1.84) BS02 CA 1.1.1.85 GO:0000287 ... Q8E9N3 22349232
    195708 3vl2:A (2.06) BS01 IPM 1.1.1.85 GO:0000287 ... Q8E9N3 22349232
    195709 3vl2:A (2.06) BS02 CA 1.1.1.85 GO:0000287 ... Q8E9N3 22349232
    195710 3vl3:A (1.8) BS01 IPM 1.1.1.85 GO:0000287 ... Q8E9N3 22349232
    195711 3vl3:A (1.8) BS02 CA 1.1.1.85 GO:0000287 ... Q8E9N3 22349232
    195712 3vl4:A (1.88) BS01 IPM 1.1.1.85 GO:0000287 ... Q8E9N3 22349232
    195713 3vl4:A (1.88) BS02 CA 1.1.1.85 GO:0000287 ... Q8E9N3 22349232
    195714 3vl6:A (2.07) BS01 IPM 1.1.1.85 GO:0000287 ... Q8E9N3 22349232
    195715 3vl6:A (2.07) BS02 CA 1.1.1.85 GO:0000287 ... Q8E9N3 22349232
    195716 3vl7:A (2.2) BS01 IPM 1.1.1.85 GO:0000287 ... Q8E9N3 22349232
    195717 3vl7:A (2.2) BS02 CA 1.1.1.85 GO:0000287 ... Q8E9N3 22349232
    195718 3vl9:A (1.2) BS01 BGC 3.2.1.151 GO:0000272 ... O94218 22496365
    195719 3vl9:A (1.2) BS02 BGC 3.2.1.151 GO:0000272 ... O94218 22496365
    195720 3vl9:A (1.2) BS03 XYS 3.2.1.151 GO:0000272 ... O94218 22496365
    195721 3vl9:A (1.2) BS04 XYS 3.2.1.151 GO:0000272 ... O94218 22496365
    195722 3vl9:B (1.2) BS01 BGC 3.2.1.151 GO:0000272 ... O94218 22496365
    195723 3vl9:B (1.2) BS02 BGC 3.2.1.151 GO:0000272 ... O94218 22496365
    195724 3vl9:B (1.2) BS03 BGC 3.2.1.151 GO:0000272 ... O94218 22496365
    195725 3vl9:B (1.2) BS04 XYS 3.2.1.151 GO:0000272 ... O94218 22496365
    195726 3vlc:A (4.5) BS01 ADP 3.6.-.- GO:0000750 ... Q12154 22684149
    195727 3vlh:A (1.73) BS01 HEM 1.11.1.21 GO:0004096 ... O59651 N/A
    195728 3vlh:B (1.73) BS01 HEM 1.11.1.21 GO:0004096 ... O59651 N/A
    195729 3vli:A (1.7) BS01 HEM 1.11.1.21 GO:0004096 ... O59651 N/A
    195730 3vli:B (1.7) BS01 HEM 1.11.1.21 GO:0004096 ... O59651 N/A
    195731 3vlj:A (1.7) BS01 HEM 1.11.1.21 GO:0004096 ... O59651 N/A
    195732 3vlj:A (1.7) BS02 DDJ 1.11.1.21 GO:0004096 ... O59651 N/A
    195733 3vlj:B (1.7) BS01 HEM 1.11.1.21 GO:0004096 ... O59651 N/A
    195734 3vlj:B (1.7) BS02 DDJ 1.11.1.21 GO:0004096 ... O59651 N/A
    195735 3vlk:A (2.0) BS01 HEM 1.11.1.21 GO:0004096 ... O59651 N/A
    195736 3vlk:B (2.0) BS01 HEM 1.11.1.21 GO:0004096 ... O59651 N/A
    195737 3vll:A (2.0) BS01 HEM 1.11.1.21 GO:0004096 ... O59651 N/A
    195738 3vll:A (2.0) BS02 SHA 1.11.1.21 GO:0004096 ... O59651 N/A
    195739 3vll:B (2.0) BS01 HEM 1.11.1.21 GO:0004096 ... O59651 N/A
    195740 3vll:B (2.0) BS02 SHA 1.11.1.21 GO:0004096 ... O59651 N/A
    195741 3vlm:A (2.33) BS01 HEM 1.11.1.21 GO:0004096 ... O59651 N/A
    195742 3vlm:B (2.33) BS01 HEM 1.11.1.21 GO:0004096 ... O59651 N/A
    195743 3vln:A (1.7) BS01 ASC 1.20.4.2
    1.8.5.1
    2.5.1.18
    GO:0004364 ... P78417 22522127
    195744 3vlu:A (1.55) BS01 BEM ? N/A A0ACD6B942 22486720
    195745 3vlu:A (1.55) BS02 BEM ? N/A A0ACD6B942 22486720
    195746 3vlu:A (1.55) BS03 BEM ? N/A A0ACD6B942 22486720
    195747 3vlu:A (1.55) BS04 CA ? N/A A0ACD6B942 22486720
    195748 3vlv:A (1.5) BS01 LGU ? N/A A0ACD6B942 22486720
    195749 3vlv:A (1.5) BS02 LGU ? N/A A0ACD6B942 22486720
    195750 3vlv:A (1.5) BS03 MAW ? N/A A0ACD6B942 22486720
    195751 3vlv:A (1.5) BS04 CA ? N/A A0ACD6B942 22486720
    195752 3vlw:A (2.0) BS01 LGU ? N/A A0ACD6B942 22486720
    195753 3vlw:A (2.0) BS02 BEM ? N/A A0ACD6B942 22486720
    195754 3vlw:A (2.0) BS03 CA ? N/A A0ACD6B942 22486720
    195755 3vlw:B (2.0) BS01 LGU ? N/A A0ACD6B942 22486720
    195756 3vlw:B (2.0) BS02 BEM ? N/A A0ACD6B942 22486720
    195757 3vlw:B (2.0) BS03 CA ? N/A A0ACD6B942 22486720
    195758 3vlx:A (1.35) BS01 SRM 1.7.7.1 GO:0016491 ... Q76KB0 22976986
    195759 3vlx:A (1.35) BS02 SF4 1.7.7.1 GO:0016491 ... Q76KB0 22976986
    195760 3vly:A (1.55) BS01 SRM 1.7.7.1 GO:0016491 ... Q76KB0 22976986
    195761 3vly:A (1.55) BS02 SF4 1.7.7.1 GO:0016491 ... Q76KB0 22976986
    195762 3vly:A (1.55) BS03 SO3 1.7.7.1 GO:0016491 ... Q76KB0 22976986
    195763 3vlz:A (2.07) BS01 SRM 1.7.7.1 GO:0016491 ... Q76KB0 22976986
    195764 3vlz:A (2.07) BS02 SF4 1.7.7.1 GO:0016491 ... Q76KB0 22976986
    195765 3vlz:A (2.07) BS03 SO3 1.7.7.1 GO:0016491 ... Q76KB0 22976986
    195766 3vm0:A (1.695) BS01 SRM 1.7.7.1 GO:0016491 ... Q76KB0 22976986
    195767 3vm0:A (1.695) BS02 SF4 1.7.7.1 GO:0016491 ... Q76KB0 22976986
    195768 3vm0:A (1.695) BS03 NO2 1.7.7.1 GO:0016491 ... Q76KB0 22976986
    195769 3vm1:A (1.5) BS01 SRM 1.7.7.1 GO:0016491 ... Q76KB0 22976986
    195770 3vm1:A (1.5) BS02 SF4 1.7.7.1 GO:0016491 ... Q76KB0 22976986
    195771 3vm1:A (1.5) BS03 BCT 1.7.7.1 GO:0016491 ... Q76KB0 22976986
    195772 3vm4:A (1.94) BS01 HEM 1.11.2.4 GO:0004497 ... O24782 22700535
    195773 3vm4:A (1.94) BS02 IZP 1.11.2.4 GO:0004497 ... O24782 22700535
    195774 3vm5:A (2.85) BS01 CA 3.2.1.1 GO:0003824 ... H2N0D4 22613096
    195775 3vm6:A (2.85) BS01 RI2 5.3.1.29 GO:0019323 ... Q5JFM9 22511789
    195776 3vm6:B (2.85) BS01 RI2 5.3.1.29 GO:0019323 ... Q5JFM9 22511789
    195777 3vm6:C (2.85) BS01 RI2 5.3.1.29 GO:0019323 ... Q5JFM9 22511789
    195778 3vm7:A (2.25) BS01 CA 3.2.1.1 GO:0004556 ... K9L8F3 23536251
    195779 3vm7:A (2.25) BS02 GLC 3.2.1.1 GO:0004556 ... K9L8F3 23536251
    195780 3vm8:A (3.0) BS01 ZN 3.5.4.38 GO:0000932 ... Q9NRW3 N/A
    195781 3vm8:B (3.0) BS01 ZN 3.5.4.38 GO:0000932 ... Q9NRW3 N/A
    195782 3vm9:A (1.05) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0003009 ... P68082 22885714
    195783 3vm9:A (1.05) BS02 HEM 1.11.1.-
    1.7.-.-
    GO:0003009 ... P68082 22885714
    195784 3vm9:B (1.05) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0003009 ... P68082 22885714
    195785 3vm9:B (1.05) BS02 HEM 1.11.1.-
    1.7.-.-
    GO:0003009 ... P68082 22885714
    195786 3vma:A (2.161) BS01 M0E 2.4.99.28
    3.4.16.4
    GO:0008233 ... P02919 19458048
    195787 3vmf:A (2.3) BS01 GTP ? GO:0000287 ... Q9YAV0 22772989
    195788 3vmf:A (2.3) BS02 MG ? GO:0000287 ... Q9YAV0 22772989
    195789 3vmg:A (1.95) BS01 FE2 1.14.12.22 GO:0051537 ... Q84II6 22727022
    195790 3vmg:A (1.95) BS02 FES 1.14.12.22 GO:0051537 ... Q84II6 22727022
    195791 3vmg:B (1.95) BS01 FE2 1.14.12.22 GO:0051537 ... Q84II6 22727022
    195792 3vmg:B (1.95) BS02 FES 1.14.12.22 GO:0051537 ... Q84II6 22727022
    195793 3vmg:B (1.95) BS03 9CA 1.14.12.22 GO:0051537 ... Q84II6 22727022
    195794 3vmg:C (1.95) BS01 FE2 1.14.12.22 GO:0051537 ... Q84II6 22727022
    195795 3vmg:C (1.95) BS02 FES 1.14.12.22 GO:0051537 ... Q84II6 22727022
    195796 3vmg:C (1.95) BS03 9CA 1.14.12.22 GO:0051537 ... Q84II6 22727022
    195797 3vmg:D (1.95) BS01 FES 1.14.12.22 GO:0008901 ... Q8GI16 22727022
    195798 3vmg:E (1.95) BS01 FES 1.14.12.22 GO:0008901 ... Q8GI16 22727022
    195799 3vmg:F (1.95) BS01 FES 1.14.12.22 GO:0008901 ... Q8GI16 22727022
    195800 3vmh:A (1.85) BS01 FE2 1.14.12.22 GO:0051537 ... Q84II6 22727022

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).