SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    196601 3vva:C (2.59) BS02 FE 1.-.-.- GO:0005739 ... Q26710 23487766
    196602 3vva:C (2.59) BS03 CHW 1.-.-.- GO:0005739 ... Q26710 23487766
    196603 3vva:D (2.59) BS01 FE 1.-.-.- GO:0005739 ... Q26710 23487766
    196604 3vva:D (2.59) BS02 FE 1.-.-.- GO:0005739 ... Q26710 23487766
    196605 3vva:D (2.59) BS03 CHW 1.-.-.- GO:0005739 ... Q26710 23487766
    196606 3vvb:A (2.8) BS01 NAP 5.1.3.2 GO:0003978 ... A0A0H3JPH0 23611437
    196607 3vvc:A (2.2) BS01 NAP 5.1.3.2 GO:0003978 ... A0A0H3JPH0 23611437
    196608 3vvd:A (2.05) BS01 ORN ? GO:0015276 ... Q72JG5 23794618
    196609 3vvd:B (2.05) BS01 ORN ? GO:0015276 ... Q72JG5 23794618
    196610 3vve:A (2.0) BS01 LYS ? GO:0015276 ... Q72JG5 23794618
    196611 3vve:B (2.0) BS01 LYS ? GO:0015276 ... Q72JG5 23794618
    196612 3vvf:A (1.9) BS01 ARG ? GO:0015276 ... Q72JG5 23794618
    196613 3vvf:B (1.9) BS01 ARG ? GO:0015276 ... Q72JG5 23794618
    196614 3vvg:A (1.9) BS01 ZGB ? GO:0000272 ... O58925 N/A
    196615 3vvg:A (1.9) BS02 ZGB ? GO:0000272 ... O58925 N/A
    196616 3vvg:A (1.9) BS03 ZGB ? GO:0000272 ... O58925 N/A
    196617 3vvg:C (1.9) BS01 ZGB ? GO:0000272 ... O58925 N/A
    196618 3vvh:A (2.0) BS01 MG 2.7.12.2 GO:0004672 ... Q02750 N/A
    196619 3vvh:A (2.0) BS02 ATP 2.7.12.2 GO:0004672 ... Q02750 N/A
    196620 3vvh:A (2.0) BS03 4BM 2.7.12.2 GO:0004672 ... Q02750 N/A BindingDB: IC50=15nM, Kd=31nM
    196621 3vvh:B (2.0) BS01 MG 2.7.12.2 GO:0004672 ... Q02750 N/A
    196622 3vvh:B (2.0) BS02 ATP 2.7.12.2 GO:0004672 ... Q02750 N/A
    196623 3vvh:B (2.0) BS03 4BM 2.7.12.2 GO:0004672 ... Q02750 N/A BindingDB: IC50=15nM, Kd=31nM
    196624 3vvh:C (2.0) BS01 MG 2.7.12.2 GO:0004672 ... Q02750 N/A
    196625 3vvh:C (2.0) BS02 ATP 2.7.12.2 GO:0004672 ... Q02750 N/A
    196626 3vvh:C (2.0) BS03 4BM 2.7.12.2 GO:0004672 ... Q02750 N/A BindingDB: IC50=15nM, Kd=31nM
    196627 3vvk:A (2.3) BS01 RET ? GO:0005216 ... P15647 23442859
    196628 3vvk:A (2.3) BS02 RET ? GO:0005216 ... P15647 23442859
    196629 3vvk:A (2.3) BS03 AZI ? GO:0005216 ... P15647 23442859
    196630 3vvk:A (2.3) BS04 22B ? GO:0005216 ... P15647 23442859
    196631 3vvk:B (2.3) BS01 RET ? GO:0005216 ... P15647 23442859
    196632 3vvk:B (2.3) BS02 RET ? GO:0005216 ... P15647 23442859
    196633 3vvk:B (2.3) BS03 22B ? GO:0005216 ... P15647 23442859
    196634 3vvk:B (2.3) BS04 AZI ? GO:0005216 ... P15647 23442859
    196635 3vvk:C (2.3) BS01 RET ? GO:0005216 ... P15647 23442859
    196636 3vvk:C (2.3) BS02 22B ? GO:0005216 ... P15647 23442859
    196637 3vvk:C (2.3) BS03 RET ? GO:0005216 ... P15647 23442859
    196638 3vvk:C (2.3) BS04 AZI ? GO:0005216 ... P15647 23442859
    196639 3vvk:D (2.3) BS01 RET ? GO:0005216 ... P15647 23442859
    196640 3vvk:D (2.3) BS02 22B ? GO:0005216 ... P15647 23442859
    196641 3vvk:D (2.3) BS03 RET ? GO:0005216 ... P15647 23442859
    196642 3vvk:D (2.3) BS04 AZI ? GO:0005216 ... P15647 23442859
    196643 3vvk:D (2.3) BS05 22B ? GO:0005216 ... P15647 23442859
    196644 3vvk:E (2.3) BS01 RET ? GO:0005216 ... P15647 23442859
    196645 3vvk:E (2.3) BS02 RET ? GO:0005216 ... P15647 23442859
    196646 3vvk:E (2.3) BS03 22B ? GO:0005216 ... P15647 23442859
    196647 3vvk:E (2.3) BS04 AZI ? GO:0005216 ... P15647 23442859
    196648 3vvk:F (2.3) BS01 RET ? GO:0005216 ... P15647 23442859
    196649 3vvk:F (2.3) BS02 22B ? GO:0005216 ... P15647 23442859
    196650 3vvk:F (2.3) BS03 RET ? GO:0005216 ... P15647 23442859
    196651 3vvk:F (2.3) BS04 AZI ? GO:0005216 ... P15647 23442859
    196652 3vvp:A (2.91) BS01 BNU ? GO:0005886 ... Q8U2X0 23535598
    196653 3vvr:A (3.0) BS01 peptide ? GO:0005886 ... Q8U2X0 23535598
    196654 3vvs:A (2.6) BS01 peptide ? GO:0005886 ... Q8U2X0 23535598
    196655 3vvy:A (1.63) BS01 ET ? GO:0003677 ... A0A0F6AY66 23800819
    196656 3vvy:B (1.63) BS01 ET ? GO:0003677 ... A0A0F6AY66 23800819
    196657 3vvy:C (1.63) BS01 ET ? GO:0003677 ... A0A0F6AY66 23800819
    196658 3vvy:D (1.63) BS01 ET ? GO:0003677 ... A0A0F6AY66 23800819
    196659 3vvz:A (2.51) BS01 RHQ ? GO:0003677 ... A0A0F6AY66 23800819
    196660 3vvz:B (2.51) BS01 RHQ ? GO:0003677 ... A0A0F6AY66 23800819
    196661 3vvz:C (2.51) BS01 RHQ ? GO:0003677 ... A0A0F6AY66 23800819
    196662 3vvz:D (2.51) BS01 RHQ ? GO:0003677 ... A0A0F6AY66 23800819
    196663 3vw0:B (2.6) BS01 DEQ ? GO:0003677 ... A0A0F6AY66 23800819
    196664 3vw0:D (2.6) BS01 DEQ ? GO:0003677 ... A0A0F6AY66 23800819
    196665 3vw1:B (2.21) BS01 CVI ? GO:0003677 ... A0A0F6AY66 23800819
    196666 3vw1:D (2.21) BS01 CVI ? GO:0003677 ... A0A0F6AY66 23800819
    196667 3vw2:A (2.34) BS01 BER ? GO:0003677 ... A0A0F6AY66 23800819
    196668 3vw2:B (2.34) BS01 BER ? GO:0003677 ... A0A0F6AY66 23800819
    196669 3vw2:C (2.34) BS01 BER ? GO:0003677 ... A0A0F6AY66 23800819
    196670 3vw2:D (2.34) BS01 BER ? GO:0003677 ... A0A0F6AY66 23800819
    196671 3vw3:H (2.5) BS01 dna N/A N/A N/A 23519658
    196672 3vw3:L (2.5) BS01 dna N/A N/A N/A 23519658
    196673 3vw3:L (2.5) BS02 dna N/A N/A N/A 23519658
    196674 3vw4:A (2.7) BS01 dna ? GO:0006355 ... Q06B24 25538245
    196675 3vw4:A (2.7) BS02 dna ? GO:0006355 ... Q06B24 25538245
    196676 3vw4:A (2.7) BS03 dna ? GO:0006355 ... Q06B24 25538245
    196677 3vw4:B (2.7) BS01 dna ? GO:0006355 ... Q06B24 25538245
    196678 3vw4:B (2.7) BS02 dna ? GO:0006355 ... Q06B24 25538245
    196679 3vw4:B (2.7) BS03 dna ? GO:0006355 ... Q06B24 25538245
    196680 3vw6:A (2.4) BS01 IM6 2.7.11.25 GO:0004672 ... Q99683 23147077 BindingDB: IC50=14nM
    196681 3vw6:B (2.4) BS01 IM6 2.7.11.25 GO:0004672 ... Q99683 23147077 BindingDB: IC50=14nM
    196682 3vw7:A (2.2) BS01 VPX 3.2.1.17 GO:0003796 ... P00720
    P25116
    23222541
    196683 3vw8:A (2.1) BS01 DF6 2.7.10.1 GO:0004672 ... P08581 24216091 BindingDB: Ki=2nM, IC50=2nM
    196684 3vw9:A (1.47) BS01 ZN 4.4.1.5 GO:0004462 ... Q04760 23122816
    196685 3vw9:A (1.47) BS02 HPJ 4.4.1.5 GO:0004462 ... Q04760 23122816 MOAD: ic50=0.011uM
    BindingDB: Ki=11nM, IC50=11nM
    196686 3vw9:A (1.47) BS03 ZN 4.4.1.5 GO:0004462 ... Q04760 23122816
    196687 3vw9:A (1.47) BS04 HPJ 4.4.1.5 GO:0004462 ... Q04760 23122816 MOAD: ic50=0.011uM
    BindingDB: Ki=11nM, IC50=11nM
    196688 3vw9:B (1.47) BS01 ZN 4.4.1.5 GO:0004462 ... Q04760 23122816
    196689 3vw9:B (1.47) BS02 HPJ 4.4.1.5 GO:0004462 ... Q04760 23122816 MOAD: ic50=0.011uM
    BindingDB: Ki=11nM, IC50=11nM
    196690 3vw9:B (1.47) BS03 ZN 4.4.1.5 GO:0004462 ... Q04760 23122816
    196691 3vw9:B (1.47) BS04 HPJ 4.4.1.5 GO:0004462 ... Q04760 23122816 MOAD: ic50=0.011uM
    BindingDB: Ki=11nM, IC50=11nM
    196692 3vwb:A (2.416) BS01 dna ? GO:0003677 ... P0A247 23985969
    196693 3vwb:A (2.416) BS02 dna ? GO:0003677 ... P0A247 23985969
    196694 3vwd:A (1.25) BS01 ACO 2.3.1.108 GO:0005874 ... Q5SQI0 N/A
    196695 3vwe:A (1.956) BS01 COA 2.3.1.108 GO:0005874 ... Q5SQI0 N/A
    196696 3vwj:A (3.093) BS01 DB3 ? N/A P15813 22995911
    196697 3vwj:C (3.093) BS01 DB3 N/A N/A N/A 22995911
    196698 3vwk:A (2.935) BS01 4GH ? N/A P15813 22995911
    196699 3vwk:C (2.935) BS01 4GH N/A N/A N/A 22995911
    196700 3vwp:A (1.55) BS01 ACA 3.5.1.46 N/A P07061
    P07062
    N/A
    196701 3vwq:A (1.7) BS01 ACA 3.5.1.46 N/A P07061
    P07062
    N/A
    196702 3vwr:A (1.65) BS01 ACA 3.5.1.46 N/A P07061
    P07062
    N/A
    196703 3vws:A (2.1) BS01 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0003968 ... Q6YMS4 23408636
    196704 3vws:A (2.1) BS02 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0003968 ... Q6YMS4 23408636
    196705 3vws:A (2.1) BS03 VWS 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0003968 ... Q6YMS4 23408636 MOAD: Kd=225uM
    196706 3vws:A (2.1) BS04 VWS 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0003968 ... Q6YMS4 23408636 MOAD: Kd=225uM
    196707 3vwx:A (1.8) BS01 GSH 2.5.1.18 GO:0003824 ... Q9U795 23268341
    196708 3vwx:B (1.8) BS01 GSH 2.5.1.18 GO:0003824 ... Q9U795 23268341
    196709 3vwx:C (1.8) BS01 GSH 2.5.1.18 GO:0003824 ... Q9U795 23268341
    196710 3vwx:D (1.8) BS01 GSH 2.5.1.18 GO:0003824 ... Q9U795 23268341
    196711 3vx0:A (1.5) BS01 CA 3.2.1.1 GO:0004556 ... P0C1B3 N/A
    196712 3vx1:A (2.2) BS01 CA 3.2.1.1 GO:0004556 ... P0C1B3 N/A
    196713 3vx3:A (2.1) BS01 ADP ? GO:0005524 ... Q5JIH4 23399544
    196714 3vx3:A (2.1) BS02 ADP ? GO:0005524 ... Q5JIH4 23399544
    196715 3vx3:B (2.1) BS01 ADP ? GO:0005524 ... Q5JIH4 23399544
    196716 3vx3:B (2.1) BS02 ADP ? GO:0005524 ... Q5JIH4 23399544
    196717 3vx4:A (2.69) BS01 ATP ? GO:0005524 ... Q8DW05 23534432
    196718 3vx4:A (2.69) BS02 MG ? GO:0005524 ... Q8DW05 23534432
    196719 3vx4:A (2.69) BS03 ATP ? GO:0005524 ... Q8DW05 23534432
    196720 3vx4:D (2.69) BS01 ATP ? GO:0005524 ... Q8DW05 23534432
    196721 3vx4:D (2.69) BS02 ATP ? GO:0005524 ... Q8DW05 23534432
    196722 3vx4:D (2.69) BS03 MG ? GO:0005524 ... Q8DW05 23534432
    196723 3vxc:A (1.85) BS01 XYP ? N/A Q76BU9 N/A
    196724 3vxc:A (1.85) BS02 XYP ? N/A Q76BU9 N/A
    196725 3vxc:B (1.85) BS01 XYP ? N/A Q76BU9 N/A
    196726 3vxc:B (1.85) BS02 XYP ? N/A Q76BU9 N/A
    196727 3vxe:H (1.25) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 23712263
    196728 3vxe:H (1.25) BS02 peptide 3.4.21.5 GO:0004252 ... P00734 23712263
    196729 3vxe:H (1.25) BS03 peptide 3.4.21.5 GO:0004252 ... P00734 23712263
    196730 3vxf:H (1.602) BS01 peptide 3.4.21.5 N/A P00734 23712263
    196731 3vxf:H (1.602) BS02 peptide 3.4.21.5 N/A P00734 23712263
    196732 3vxf:H (1.602) BS03 peptide 3.4.21.5 N/A P00734 23712263
    196733 3vxi:A (1.5) BS01 HEM 1.11.1.19 GO:0004601 ... Q8WZK8 N/A
    196734 3vxi:A (1.5) BS02 ASC 1.11.1.19 GO:0004601 ... Q8WZK8 N/A
    196735 3vxj:A (1.39) BS01 HEM 1.11.1.19 GO:0004601 ... Q8WZK8 N/A
    196736 3vxj:A (1.39) BS02 3DM 1.11.1.19 GO:0004601 ... Q8WZK8 N/A
    196737 3vxj:A (1.39) BS03 3DM 1.11.1.19 GO:0004601 ... Q8WZK8 N/A
    196738 3vxm:A (2.5) BS01 peptide ? N/A P04439 24192765
    196739 3vxm:D (2.5) BS01 peptide N/A N/A N/A 24192765
    196740 3vxm:E (2.5) BS01 peptide N/A N/A N/A 24192765
    196741 3vxm:E (2.5) BS02 CO N/A N/A N/A 24192765
    196742 3vxm:E (2.5) BS03 CO N/A N/A N/A 24192765
    196743 3vxn:A (1.95) BS01 peptide ? N/A P04439 24192765
    196744 3vxo:A (2.61) BS01 peptide ? N/A P04439 24192765
    196745 3vxo:D (2.61) BS01 peptide ? N/A P04439 24192765
    196746 3vxp:A (2.5) BS01 peptide ? N/A P04439 24192765
    196747 3vxp:D (2.5) BS01 peptide ? N/A P04439 24192765
    196748 3vxr:A (2.4) BS01 peptide ? N/A P04439 24192765
    196749 3vxr:D (2.4) BS01 peptide N/A N/A N/A 24192765
    196750 3vxr:E (2.4) BS01 peptide N/A N/A N/A 24192765
    196751 3vxs:A (1.8) BS01 peptide ? N/A P04439 24192765
    196752 3vxs:D (1.8) BS01 peptide N/A N/A N/A 24192765
    196753 3vxs:E (1.8) BS01 peptide N/A N/A N/A 24192765
    196754 3vxu:A (2.7) BS01 peptide ? N/A P04439 24192765
    196755 3vxu:E (2.7) BS01 peptide N/A N/A N/A 24192765
    196756 3vxu:F (2.7) BS01 peptide ? N/A P04439 24192765
    196757 3vxu:J (2.7) BS01 peptide N/A N/A N/A 24192765
    196758 3vxv:A (2.0) BS01 dna 3.2.2.- GO:0003677 ... Q9Z2D7 23316048
    196759 3vxv:A (2.0) BS02 dna 3.2.2.- GO:0003677 ... Q9Z2D7 23316048
    196760 3vxw:A (3.0) BS01 peptide ? GO:0000045 ... P38182 22308029
    196761 3vxx:A (2.204) BS01 dna 3.2.2.- GO:0003677 ... Q9Z2D7 23316048
    196762 3vxx:A (2.204) BS02 dna 3.2.2.- GO:0003677 ... Q9Z2D7 23316048
    196763 3vy2:A (1.6) BS01 FMN ? GO:0005737 ... Q46604 N/A
    196764 3vy2:A (1.6) BS02 FMN ? GO:0005737 ... Q46604 N/A
    196765 3vy2:B (1.6) BS01 FMN ? GO:0005737 ... Q46604 N/A
    196766 3vy2:B (1.6) BS02 FMN ? GO:0005737 ... Q46604 N/A
    196767 3vy5:A (1.4) BS01 FMN ? GO:0005737 ... Q46604 N/A
    196768 3vy5:A (1.4) BS02 FMN ? GO:0005737 ... Q46604 N/A
    196769 3vy5:B (1.4) BS01 FMN ? GO:0005737 ... Q46604 N/A
    196770 3vy5:B (1.4) BS02 FMN ? GO:0005737 ... Q46604 N/A
    196771 3vy6:A (2.0) BS01 BGC ? GO:0005515 ... O60844 24790092
    196772 3vy7:A (2.14) BS01 MAN ? GO:0005515 ... O60844 24790092
    196773 3vya:A (2.4) BS01 FMN ? GO:0005737 ... Q46604 N/A
    196774 3vyb:A (2.4) BS01 dna 3.2.2.- GO:0003677 ... Q9Z2D7 23316048
    196775 3vyb:A (2.4) BS02 dna 3.2.2.- GO:0003677 ... Q9Z2D7 23316048
    196776 3vyd:A (2.81) BS01 VYD 3.4.23.15 GO:0004190 ... P00797 23122821 BindingDB: IC50=406nM
    196777 3vyd:B (2.81) BS01 VYD 3.4.23.15 GO:0004190 ... P00797 23122821 BindingDB: IC50=406nM
    196778 3vye:A (2.7) BS01 VYE 3.4.23.15 GO:0004190 ... P00797 23122821 BindingDB: IC50=7.7nM
    196779 3vye:B (2.7) BS01 VYE 3.4.23.15 GO:0004190 ... P00797 23122821 BindingDB: IC50=7.7nM
    196780 3vyf:A (2.8) BS01 VYF 3.4.23.15 GO:0004190 ... P00797 23122821 BindingDB: IC50=1.6nM
    196781 3vyf:B (2.8) BS01 VYF 3.4.23.15 GO:0004190 ... P00797 23122821 BindingDB: IC50=1.6nM
    196782 3vyg:C (1.72) BS01 3CO 3.5.5.8 GO:0003824 ... O66188 N/A
    196783 3vyg:F (1.72) BS01 3CO 3.5.5.8 GO:0003824 ... O66188 N/A
    196784 3vyg:I (1.72) BS01 3CO 3.5.5.8 GO:0003824 ... O66188 N/A
    196785 3vyg:L (1.72) BS01 3CO 3.5.5.8 GO:0003824 ... O66188 N/A
    196786 3vyh:A (1.63) BS01 CO 4.2.1.84 GO:0003824 ... Q7SID2 N/A
    196787 3vyk:A (1.5) BS01 MAN ? N/A Q5YIR8 24108122
    196788 3vyk:A (1.5) BS02 CA ? N/A Q5YIR8 24108122
    196789 3vyl:A (2.7) BS01 MN 5.3.1.- N/A N0DP12 24311575
    196790 3vyl:B (2.7) BS01 MN 5.3.1.- N/A N0DP12 24311575
    196791 3vyl:C (2.7) BS01 MN 5.3.1.- N/A N0DP12 24311575
    196792 3vyl:D (2.7) BS01 MN 5.3.1.- N/A N0DP12 24311575
    196793 3vyl:E (2.7) BS01 MN 5.3.1.- N/A N0DP12 24311575
    196794 3vyl:F (2.7) BS01 MN 5.3.1.- N/A N0DP12 24311575
    196795 3vyl:G (2.7) BS01 MN 5.3.1.- N/A N0DP12 24311575
    196796 3vyl:H (2.7) BS01 MN 5.3.1.- N/A N0DP12 24311575
    196797 3vym:A (2.0) BS01 HEC ? GO:0005506 ... P15452 23035813
    196798 3vyp:A (1.4) BS01 MXR 2.3.2.- GO:0016740 ... I6Y9J2 23588382
    196799 3vyp:B (1.4) BS01 MXR 2.3.2.- GO:0016740 ... I6Y9J2 23588382
    196800 3vyq:A (2.525) BS01 dna 3.2.2.- GO:0003677 ... Q9Z2D7 23316048

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).