SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1072601 9zrg:Cb (3.1) BS01 rna N/A N/A N/A 41603730
    1072602 9zrg:Cb (3.1) BS02 rna N/A N/A N/A 41603730
    1072603 9zrg:Cc (3.1) BS01 rna N/A N/A N/A 41603730
    1072604 9zrg:Cd (3.1) BS01 rna N/A N/A N/A 41603730
    1072605 9zrg:Ce (3.1) BS01 rna N/A N/A N/A 41603730
    1072606 9zrg:Ce (3.1) BS02 rna N/A N/A N/A 41603730
    1072607 9zrg:Cf (3.1) BS01 rna N/A N/A N/A 41603730
    1072608 9zrg:Cf (3.1) BS02 rna N/A N/A N/A 41603730
    1072609 9zrg:Cg (3.1) BS01 rna N/A N/A N/A 41603730
    1072610 9zrg:Ch (3.1) BS01 rna N/A N/A N/A 41603730
    1072611 9zrg:Ch (3.1) BS02 rna N/A N/A N/A 41603730
    1072612 9zrg:Ci (3.1) BS01 rna N/A N/A N/A 41603730
    1072613 9zrg:Ci (3.1) BS02 rna N/A N/A N/A 41603730
    1072614 9zrg:Cj (3.1) BS01 rna N/A N/A N/A 41603730
    1072615 9zrg:Cj (3.1) BS02 rna N/A N/A N/A 41603730
    1072616 9zrg:Cj (3.1) BS03 rna N/A N/A N/A 41603730
    1072617 9zrg:Ck (3.1) BS01 rna N/A N/A N/A 41603730
    1072618 9zrg:Cl (3.1) BS01 rna N/A N/A N/A 41603730
    1072619 9zrg:Cl (3.1) BS02 rna N/A N/A N/A 41603730
    1072620 9zrg:Cl (3.1) BS03 rna N/A N/A N/A 41603730
    1072621 9zrg:Cm (3.1) BS01 rna N/A N/A N/A 41603730
    1072622 9zrg:Cm (3.1) BS02 rna N/A N/A N/A 41603730
    1072623 9zrg:Co (3.1) BS01 rna N/A N/A N/A 41603730
    1072624 9zrg:Co (3.1) BS02 rna N/A N/A N/A 41603730
    1072625 9zrg:Co (3.1) BS03 rna N/A N/A N/A 41603730
    1072626 9zrg:Cp (3.1) BS01 rna N/A N/A N/A 41603730
    1072627 9zrg:Cp (3.1) BS02 rna N/A N/A N/A 41603730
    1072628 9zrg:Cp (3.1) BS03 rna N/A N/A N/A 41603730
    1072629 9zrg:Cr (3.1) BS01 rna N/A N/A N/A 41603730
    1072630 9zrg:Cr (3.1) BS02 rna N/A N/A N/A 41603730
    1072631 9zrg:Cz (3.1) BS01 rna N/A N/A N/A 41603730
    1072632 9zrg:Cz (3.1) BS02 rna N/A N/A N/A 41603730
    1072633 9zrk:A (2.99) BS01 A1C3U N/A N/A O15554 N/A
    1072634 9zrk:B (2.99) BS01 A1C3U N/A N/A O15554 N/A
    1072635 9zrk:C (2.99) BS01 A1C3U N/A N/A O15554 N/A
    1072636 9zrk:D (2.99) BS01 A1C3U N/A N/A O15554 N/A
    1072637 9zrk:E (2.99) BS01 A1C3U N/A GO:0000922 ... P0DP23 N/A
    1072638 9zrk:E (2.99) BS02 CA N/A GO:0000922 ... P0DP23 N/A
    1072639 9zrk:E (2.99) BS03 CA N/A GO:0000922 ... P0DP23 N/A
    1072640 9zrk:E (2.99) BS04 CA N/A GO:0000922 ... P0DP23 N/A
    1072641 9zrk:E (2.99) BS05 CA N/A GO:0000922 ... P0DP23 N/A
    1072642 9zrk:F (2.99) BS01 A1C3U N/A GO:0000922 ... P0DP23 N/A
    1072643 9zrk:F (2.99) BS02 CA N/A GO:0000922 ... P0DP23 N/A
    1072644 9zrk:F (2.99) BS03 CA N/A GO:0000922 ... P0DP23 N/A
    1072645 9zrk:F (2.99) BS04 CA N/A GO:0000922 ... P0DP23 N/A
    1072646 9zrk:F (2.99) BS05 CA N/A GO:0000922 ... P0DP23 N/A
    1072647 9zrk:G (2.99) BS01 A1C3U N/A GO:0000922 ... P0DP23 N/A
    1072648 9zrk:G (2.99) BS02 CA N/A GO:0000922 ... P0DP23 N/A
    1072649 9zrk:G (2.99) BS03 CA N/A GO:0000922 ... P0DP23 N/A
    1072650 9zrk:G (2.99) BS04 CA N/A GO:0000922 ... P0DP23 N/A
    1072651 9zrk:G (2.99) BS05 CA N/A GO:0000922 ... P0DP23 N/A
    1072652 9zrk:H (2.99) BS01 A1C3U N/A GO:0000922 ... P0DP23 N/A
    1072653 9zrk:H (2.99) BS02 CA N/A GO:0000922 ... P0DP23 N/A
    1072654 9zrk:H (2.99) BS03 CA N/A GO:0000922 ... P0DP23 N/A
    1072655 9zrk:H (2.99) BS04 CA N/A GO:0000922 ... P0DP23 N/A
    1072656 9zrk:H (2.99) BS05 CA N/A GO:0000922 ... P0DP23 N/A
    1072657 9zrq:E (2.77) BS01 A1C3Q N/A GO:0000922 ... P0DP23 N/A
    1072658 9zrq:E (2.77) BS02 CA N/A GO:0000922 ... P0DP23 N/A
    1072659 9zrq:E (2.77) BS03 CA N/A GO:0000922 ... P0DP23 N/A
    1072660 9zrq:F (2.77) BS01 A1C3Q N/A GO:0000922 ... P0DP23 N/A
    1072661 9zrq:F (2.77) BS02 CA N/A GO:0000922 ... P0DP23 N/A
    1072662 9zrq:F (2.77) BS03 CA N/A GO:0000922 ... P0DP23 N/A
    1072663 9zrq:G (2.77) BS01 A1C3Q N/A GO:0000922 ... P0DP23 N/A
    1072664 9zrq:G (2.77) BS02 CA N/A GO:0000922 ... P0DP23 N/A
    1072665 9zrq:G (2.77) BS03 CA N/A GO:0000922 ... P0DP23 N/A
    1072666 9zrq:H (2.77) BS01 A1C3Q N/A GO:0000922 ... P0DP23 N/A
    1072667 9zrq:H (2.77) BS02 CA N/A GO:0000922 ... P0DP23 N/A
    1072668 9zrq:H (2.77) BS03 CA N/A GO:0000922 ... P0DP23 N/A
    1072669 9zum:A (2.43) BS01 dna N/A N/A N/A N/A
    1072670 9zum:B (2.43) BS01 dna N/A N/A N/A N/A
    1072671 9zum:B (2.43) BS02 dna N/A N/A N/A N/A
    1072672 9zum:C (2.43) BS01 dna N/A N/A N/A N/A
    1072673 9zum:C (2.43) BS02 dna N/A N/A N/A N/A
    1072674 9zum:D (2.43) BS01 dna N/A N/A N/A N/A
    1072675 9zum:D (2.43) BS02 dna N/A N/A N/A N/A
    1072676 9zuz:A (2.25) BS01 PRO N/A GO:0002183 ... Q14232 41704357
    1072677 9zuz:B (2.25) BS01 A1C32 N/A GO:0001541 ... P49770 41704357
    1072678 9zvr:A (2.1) BS01 017 N/A N/A A0A1Y1C9N2 N/A
    1072679 9zvr:B (2.1) BS01 017 N/A N/A A0A1Y1C9N2 N/A
    1072680 9zye:A (2.7) BS01 A60 N/A N/A A0A1Y1C9N2 N/A
    1072681 9zye:B (2.7) BS01 A60 N/A N/A A0A1Y1C9N2 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).