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BioLiP
Download all results in tab-seperated text for 23 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3mnn:A (2.5) BS01 dna ? GO:0000786 ... P84233 21344528
    2 3mnn:A (2.5) BS02 dna ? GO:0000786 ... P84233 21344528
    3 3mnn:B (2.5) BS01 dna ? GO:0000786 ... P62799 21344528
    4 3mnn:B (2.5) BS02 dna ? GO:0000786 ... P62799 21344528
    5 3mnn:C (2.5) BS01 dna ? GO:0000786 ... P06897 21344528
    6 3mnn:C (2.5) BS02 dna ? GO:0000786 ... P06897 21344528
    7 3mnn:D (2.5) BS01 dna ? GO:0000786 ... P02281 21344528
    8 3mnn:D (2.5) BS02 dna ? GO:0000786 ... P02281 21344528
    9 3mnn:E (2.5) BS01 dna ? GO:0000786 ... P84233 21344528
    10 3mnn:E (2.5) BS02 dna ? GO:0000786 ... P84233 21344528
    11 3mnn:F (2.5) BS01 dna ? GO:0000786 ... P62799 21344528
    12 3mnn:F (2.5) BS02 dna ? GO:0000786 ... P62799 21344528
    13 3mnn:F (2.5) BS03 RU ? GO:0000786 ... P62799 21344528
    14 3mnn:F (2.5) BS04 MML ? GO:0000786 ... P62799 21344528
    15 3mnn:F (2.5) BS05 PTW ? GO:0000786 ... P62799 21344528
    16 3mnn:G (2.5) BS01 dna ? GO:0000786 ... P06897 21344528
    17 3mnn:G (2.5) BS02 dna ? GO:0000786 ... P06897 21344528
    18 3mnn:G (2.5) BS03 RU ? GO:0000786 ... P06897 21344528
    19 3mnn:G (2.5) BS04 MML ? GO:0000786 ... P06897 21344528
    20 3mnn:G (2.5) BS05 PTW ? GO:0000786 ... P06897 21344528
    21 3mnn:H (2.5) BS01 dna ? GO:0000786 ... P02281 21344528
    22 3mnn:H (2.5) BS02 dna ? GO:0000786 ... P02281 21344528
    23 3mnn:H (2.5) BS03 MML ? GO:0000786 ... P02281 21344528
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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