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BioLiP

PDB CCD ID: AX9
Number of entries in BioLiP: 61
Chemical formula: C33 H40 N4 O6
InChI: InChI=1S/C33H40N4O6/c1-7-20-19(6)32(42)37-27(20)14-25-18(5)23(10-12-31(40)41)29(35-25)15-28-22(9-11-30(38)39)17(4)24(34-28)13-26-16(3)21(8-2)33(43)36-26/h14-15,26,35H,7-13H2,1-6H3,(H,36,43)(H,37,42)(H,38,39)(H,40,41)/b27-14-,28-15-/t26-/m1/s1
InChIKey: MZFCOERRVCGRTL-ZTYGKHTCSA-N
SMILES:
SoftwareSMILES
CACTVS 3.385CCC1=C(C)[C@@H](CC2=NC(=C/c3[nH]c(/C=C/4NC(=O)C(=C/4CC)C)c(C)c3CCC(O)=O)\C(=C2C)CCC(O)=O)NC1=O
ACDLabs 12.01O=C(O)CCc1c(C)c(/C=C2\NC(=O)C(C)=C2CC)[NH]c1/C=C1\N=C(CC2NC(=O)C(CC)=C2C)C(C)=C1CCC(=O)O
CACTVS 3.385CCC1=C(C)[CH](CC2=NC(=Cc3[nH]c(C=C4NC(=O)C(=C4CC)C)c(C)c3CCC(O)=O)C(=C2C)CCC(O)=O)NC1=O
OpenEye OEToolkits 2.0.7CCC1=C(C(NC1=O)CC2=NC(=Cc3c(c(c([nH]3)C=C4C(=C(C(=O)N4)C)CC)C)CCC(=O)O)C(=C2C)CCC(=O)O)C
OpenEye OEToolkits 2.0.7CCC1=C([C@H](NC1=O)CC2=N/C(=C\c3c(c(c([nH]3)/C=C\4/C(=C(C(=O)N4)C)CC)C)CCC(=O)O)/C(=C2C)CCC(=O)O)C
Name:DiCys-(15,16)-Dihydrobiliverdin;
15,16-DIHYDROBILIVERDIN (double Cys bound form);
3-[(2Z)-2-({3-(2-carboxyethyl)-5-[(Z)-(3-ethyl-4-methyl-5-oxo-1,5-dihydro-2H-pyrrol-2-ylidene)methyl]-4-methyl-1H-pyrrol-2-yl}methylidene)-5-{[(2R)-4-ethyl-3-methyl-5-oxo-2,5-dihydro-1H-pyrrol-2-yl]methyl}-4-methyl-2H-pyrrol-3-yl]propanoic acid
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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