BioLiP

PDB

BioLiP

PDB CCD ID:

RP3

Number of entries in BioLiP:

Chemical formula:

C5 H11 O7 P

InChI:

InChI=1S/C5H11O7P/c6-4-1-3(12-5(4)7)2-11-13(8,9)10/h3-7H,1-2H2,(H2,8,9,10)/t3-,4+,5+/m0/s1

InChIKey:

OOLHLHJSMUTTHE-VPENINKCSA-N

SMILES:

Software	SMILES
CACTVS 3.385	O[C@@H]1C[C@@H](CO[P](O)(O)=O)O[C@H]1O
OpenEye OEToolkits 1.9.2	C1[C@H](O[C@H]([C@@H]1O)O)COP(=O)(O)O
ACDLabs 12.01	OP(O)(=O)OCC1OC(C(C1)O)O
CACTVS 3.385	O[CH]1C[CH](CO[P](O)(O)=O)O[CH]1O
OpenEye OEToolkits 1.9.2	C1C(OC(C1O)O)COP(=O)(O)O

Name:

3-deoxy-5-O-phosphono-beta-D-ribofuranose;
3'-deoxy-D-ribofuranose-5'-phosphate;
3-deoxy-5-O-phosphono-beta-D-ribose;
3-deoxy-5-O-phosphono-D-ribose;
3-deoxy-5-O-phosphono-ribose

ZINC:

ZINC000033801661

Reference:

Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).

Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).