BioLiP

PDB

BioLiP

PDB CCD ID:

8GA

Number of entries in BioLiP:

Chemical formula:

C6 H12 O4 Se

InChI:

InChI=1S/C6H12O4Se/c1-11-2-3-4(7)5(8)6(9)10-3/h3-9H,2H2,1H3/t3-,4-,5-,6+/m1/s1

InChIKey:

UFNQFLPLDXICBS-KAZBKCHUSA-N

SMILES:

Software	SMILES
OpenEye OEToolkits 2.0.6	C[Se]C[C@@H]1[C@H]([C@H]([C@H](O1)O)O)O
CACTVS 3.385	C[Se]C[C@H]1O[C@H](O)[C@H](O)[C@@H]1O
ACDLabs 12.01	C[Se]CC1OC(O)C(O)C1O
OpenEye OEToolkits 2.0.6	C[Se]CC1C(C(C(O1)O)O)O
CACTVS 3.385	C[Se]C[CH]1O[CH](O)[CH](O)[CH]1O

Name:

5-Se-methyl-5-seleno-alpha-D-ribofuranose;
5-Se-methyl-5-seleno-alpha-D-ribose;
5-Se-methyl-5-seleno-D-ribose;
5-Se-methyl-5-seleno-ribose

Reference:

Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).

Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).