BioLiP

PDB

BioLiP

PDB CCD ID:

A1L3O

Number of entries in BioLiP:

Chemical formula:

C9 H13 N2 O10 P

InChI:

InChI=1S/C9H13N2O10P/c12-3-1-11(9(16)10-7(3)15)8-6(14)5(13)4(21-8)2-20-22(17,18)19/h1,4-6,8,12-14H,2H2,(H,10,15,16)(H2,17,18,19)/t4-,5-,6-,8-/m1/s1

InChIKey:

YGRIIPJUCYYPFJ-UAKXSSHOSA-N

SMILES:

Software	SMILES
CACTVS 3.385	O[CH]1[CH](O)[CH](O[CH]1CO[P](O)(O)=O)N2C=C(O)C(=O)NC2=O
CACTVS 3.385	O[C@H]1[C@@H](O)[C@@H](O[C@@H]1CO[P](O)(O)=O)N2C=C(O)C(=O)NC2=O
OpenEye OEToolkits 2.0.7	C1=C(C(=O)NC(=O)N1C2C(C(C(O2)COP(=O)(O)O)O)O)O
OpenEye OEToolkits 2.0.7	C1=C(C(=O)NC(=O)N1[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)O)O

Name:

5-Hydroxyuridine 5'-phosphate;
[(2~{R},3~{S},4~{R},5~{R})-3,4-bis(oxidanyl)-5-[5-oxidanyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]oxolan-2-yl]methyl dihydrogen phosphate

Reference:

Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).

Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).